View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2212_high_1 (Length: 491)
Name: NF2212_high_1
Description: NF2212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2212_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 469; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 1 - 481
Target Start/End: Original strand, 49934017 - 49934497
Alignment:
| Q |
1 |
gggctgcctcactagttctgagaggaaggttcccttttacaagcagttttccttttctgcctagcctactctccagtgaggtgatggataacctgtttga |
100 |
Q |
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| T |
49934017 |
gggctgcttcactagttctgagaggaaggttcccttttacaagcagttttccttttctgcctagcctactctccagtgaggtgatggataacctgtttga |
49934116 |
T |
|
| Q |
101 |
tttcatgtaaacagtaccaccaaaaccagttagtggcttacgaaacaccggtgaagatatagacgccctgtgaaacattgcatagccattaagcaatggt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49934117 |
tttcatgtaaacagtaccaccaaaaccagttagtggcttacggaacaccggtgaagatatagacgccctgtgaaacattgcatagccattaagcaatggt |
49934216 |
T |
|
| Q |
201 |
tgatcaactgtgcctctcacctattaaatcaatacatggaacaagatttatagaagtgagtaaaatcaaacaattagatgaaaaaattgtatcgacgaca |
300 |
Q |
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| T |
49934217 |
tgatcaactgtgcctctcacctattaaatcaatacatggaacaagatttatagaagtgagtaaaatcaaataattagatgaaaaaattgtatcgacgaca |
49934316 |
T |
|
| Q |
301 |
ccaacctcaagcatgacatgggcatttccatgaagccaattagcataaggggataaagctgttactagcatcattcccccatcttttatatcggcgtcca |
400 |
Q |
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| T |
49934317 |
ccaacctcaagcatgacatgggcatttccatgaagccaattagcataaggggataaagctgttactagcatcattcccccatcttttatatcggcgtcca |
49934416 |
T |
|
| Q |
401 |
ctctaacttctccaacatctagaatttgtgaatataaaccttcaaggctgtctgctaaccgagtattccaaaattcttcat |
481 |
Q |
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| T |
49934417 |
ctctaacttctccaacatctagaatttgtgaatataaaccttcaaggctgtctgctaaccgagtattccaaaattcttcat |
49934497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 77; Significance: 2e-35; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 299 - 471
Target Start/End: Complemental strand, 1914098 - 1913926
Alignment:
| Q |
299 |
caccaacctcaagcatgacatgggcatttccatgaagccaattagcataaggggataaagctgttactagcatcattcccccatcttttatatcggcgtc |
398 |
Q |
| |
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|||| |||||||||||||||| ||||| |||||||||||||| |||| ||| |||||||||||||| | | |||||||||||||||||||||| ||||| |
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| T |
1914098 |
cacccacctcaagcatgacatcagcattaccatgaagccaattggcatgaggagataaagctgttaccaacgtcattcccccatcttttatatcagcgtc |
1913999 |
T |
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| Q |
399 |
cactctaacttctccaacatctagaatttgtgaatataaaccttcaaggctgtctgctaaccgagtattccaa |
471 |
Q |
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| T |
1913998 |
aatcctgacttctccagcatctaaaatttgccaatttaaacctttaaggctttctgctaattgagtattccaa |
1913926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 3 - 157
Target Start/End: Complemental strand, 1914390 - 1914236
Alignment:
| Q |
3 |
gctgcctcactagttctgagaggaaggttcccttttacaagcagttttccttttctgcctagcctactctccagtgaggtgatggataacctgtttgatt |
102 |
Q |
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||||| |||||||||||||| || ||||| ||||||||||| || ||||||||||||| || ||||||||| ||||| |||||| ||| ||||||||||| |
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| T |
1914390 |
gctgcttcactagttctgagtggtaggttgccttttacaagaagctttccttttctgcttaccctactctctagtgatgtgatgcatagcctgtttgatt |
1914291 |
T |
|
| Q |
103 |
tcatgtaaacagtaccaccaaaaccagttagtggcttacgaaacaccggtgaaga |
157 |
Q |
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||| || |||||| |||||||| || |||||||| || ||||| |||||||| |
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| T |
1914290 |
tcacgttaacagttccaccaaagttggtgagtggctttcggaacacgggtgaaga |
1914236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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