View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2212_high_11 (Length: 232)
Name: NF2212_high_11
Description: NF2212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2212_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 146; Significance: 5e-77; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 25 - 182
Target Start/End: Original strand, 52407208 - 52407365
Alignment:
| Q |
25 |
aatggcattggcagggggatctctacgataatgagagcttggtgaaagcaatgaagcaggtagacgtggtcatatctgcactcagtcacacacatgcttc |
124 |
Q |
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| T |
52407208 |
aatggcattggcagggggatctctacgataatgagagcttggtgaaagcaatgaagcaggtagacgtggtcatatctgcactcagtcacacacatgctgc |
52407307 |
T |
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| Q |
125 |
tgatcaagtgaaaatcatcgatgccattaaagaggctggtaatgttaaggttatcctt |
182 |
Q |
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| T |
52407308 |
tgatcaattgaaaatcatccatgccattaaagaggctggtaatgttaaggttatcctt |
52407365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 35 - 101
Target Start/End: Original strand, 52400396 - 52400462
Alignment:
| Q |
35 |
gcagggggatctctacgataatgagagcttggtgaaagcaatgaagcaggtagacgtggtcatatct |
101 |
Q |
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| T |
52400396 |
gcagggggatctgtataatcatgagaacttggtgaaagcaatcaagcaggtagatgtggtcatatct |
52400462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 176
Target Start/End: Original strand, 52400487 - 52400537
Alignment:
| Q |
126 |
gatcaagtgaaaatcatcgatgccattaaagaggctggtaatgttaaggtt |
176 |
Q |
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| T |
52400487 |
gatcaagtgaagattatcgctgcaattaaggaggctggtaatgttaaggtt |
52400537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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