View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2212_high_4 (Length: 416)
Name: NF2212_high_4
Description: NF2212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2212_high_4 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 24 - 402
Target Start/End: Original strand, 33966008 - 33966390
Alignment:
| Q |
24 |
gaggctacattgattttctattattcaagcttaagaatacgtattataaatgtttaaatactatcgttcagtttacaagattatccctgaatcataccat |
123 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |||||| |||||||| ||||| |||||||| ||| |||||||||||||||||||||||| |||||| |
|
|
| T |
33966008 |
gaggctacattgattttcgattattcaagcttaggaatacatattataagtgttttaatactatagtttagtttacaagattatccctgaatcgtaccat |
33966107 |
T |
|
| Q |
124 |
tgaggactccacgccaataagggtacnnnnnnnnntaac---taaatctttagtcaaagactaataatctgagaattctgatgatagaaactcacaagga |
220 |
Q |
| |
|
|||||||||| | ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
33966108 |
tgaggactccgcaccaataagggtacaaaaaaaaaaaacaactaaatctttagtcaaagactaataatctgagaattctaatgatagaaactcataagga |
33966207 |
T |
|
| Q |
221 |
aaaaacacaagaagaaacaaa-gttgtctgtgtaatctctttccaacaacattttatgtgtaaactaaaaaacataacataataccaaatgcagacaaac |
319 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
33966208 |
aaaaacacaagaagaaacaaaagttgtctgtgtaatctctttccaacaacattgtatgtgtaaactaaaaaacataacacaataccaaatgcagacaaac |
33966307 |
T |
|
| Q |
320 |
accaaaattcatctctgacaaaaacaaacatcaaattattcaaaaatgttggctactcaatttggtccgacatcaaggttttt |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33966308 |
accaaaattcatctctgacaaaaacaaacatcaagttattcaaaaatgttggctactcaatttggtccgacatcaaggttttt |
33966390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University