View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2212_low_1 (Length: 641)

Name: NF2212_low_1
Description: NF2212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2212_low_1
NF2212_low_1
[»] chr6 (27 HSPs)
chr6 (20-297)||(20399691-20399977)
chr6 (30-167)||(20432260-20432397)
chr6 (290-526)||(20432516-20432751)
chr6 (290-433)||(20399996-20400140)
chr6 (290-447)||(31407358-31407515)
chr6 (290-458)||(33593073-33593241)
chr6 (290-458)||(27890426-27890592)
chr6 (426-577)||(20400227-20400381)
chr6 (371-540)||(28669286-28669455)
chr6 (303-458)||(7621902-7622058)
chr6 (290-407)||(18490549-18490664)
chr6 (511-577)||(20432766-20432833)
chr6 (230-286)||(20432429-20432485)
chr6 (313-388)||(645395-645470)
chr6 (187-276)||(20981366-20981456)
chr6 (181-286)||(11327340-11327454)
chr6 (290-402)||(31108252-31108361)
chr6 (309-402)||(24209649-24209744)
chr6 (290-410)||(4841739-4841855)
chr6 (309-346)||(5422588-5422625)
chr6 (181-286)||(19748570-19748684)
chr6 (181-286)||(22498218-22498332)
chr6 (315-402)||(7857101-7857188)
chr6 (239-276)||(7621820-7621857)
chr6 (229-286)||(15527945-15528002)
chr6 (293-352)||(4596780-4596842)
chr6 (238-286)||(27890623-27890671)
[»] chr2 (26 HSPs)
chr2 (294-447)||(19245647-19245800)
chr2 (290-447)||(974389-974544)
chr2 (290-458)||(41002066-41002231)
chr2 (290-402)||(21869244-21869355)
chr2 (290-401)||(7301884-7301993)
chr2 (290-402)||(34577987-34578095)
chr2 (293-399)||(24473931-24474037)
chr2 (290-407)||(27406895-27407010)
chr2 (290-410)||(25539055-25539173)
chr2 (290-408)||(19492035-19492152)
chr2 (290-456)||(26251567-26251735)
chr2 (290-352)||(20034145-20034206)
chr2 (290-387)||(34841705-34841800)
chr2 (290-457)||(19519433-19519593)
chr2 (332-542)||(27749713-27749924)
chr2 (290-345)||(13502583-13502638)
chr2 (290-345)||(31023466-31023521)
chr2 (290-410)||(5395432-5395551)
chr2 (290-352)||(27524019-27524080)
chr2 (181-286)||(20063960-20064074)
chr2 (309-387)||(16766910-16766986)
chr2 (230-285)||(16767023-16767078)
chr2 (230-287)||(20034058-20034115)
chr2 (230-286)||(974575-974631)
chr2 (230-286)||(1405020-1405076)
chr2 (294-346)||(8428385-8428437)
[»] chr8 (14 HSPs)
chr8 (290-458)||(26575033-26575200)
chr8 (290-352)||(15761268-15761330)
chr8 (302-447)||(40541754-40541898)
chr8 (290-402)||(16752119-16752229)
chr8 (290-400)||(1018091-1018199)
chr8 (290-343)||(2040273-2040325)
chr8 (290-402)||(8582153-8582262)
chr8 (230-285)||(17647235-17647290)
chr8 (290-345)||(30240280-30240335)
chr8 (290-345)||(45403194-45403249)
chr8 (290-346)||(26879737-26879794)
chr8 (290-345)||(6810986-6811039)
chr8 (173-209)||(19335298-19335334)
chr8 (230-286)||(24414123-24414179)
[»] chr3 (27 HSPs)
chr3 (290-538)||(6861049-6861298)
chr3 (290-402)||(22970904-22971015)
chr3 (302-388)||(8592333-8592419)
chr3 (290-352)||(9169818-9169879)
chr3 (290-403)||(18014088-18014197)
chr3 (290-410)||(27676538-27676655)
chr3 (290-402)||(19348649-19348759)
chr3 (290-351)||(23649385-23649446)
chr3 (181-286)||(28746013-28746127)
chr3 (302-352)||(10591790-10591840)
chr3 (290-347)||(15806293-15806350)
chr3 (290-352)||(21553815-21553880)
chr3 (293-345)||(3041375-3041426)
chr3 (230-285)||(21963669-21963724)
chr3 (230-285)||(21986105-21986160)
chr3 (309-347)||(28135924-28135962)
chr3 (181-235)||(3449088-3449143)
chr3 (290-349)||(8560380-8560437)
chr3 (230-285)||(22137515-22137570)
chr3 (313-352)||(27055267-27055306)
chr3 (290-340)||(6136479-6136529)
chr3 (181-299)||(8592177-8592304)
chr3 (335-452)||(8566180-8566295)
chr3 (230-287)||(24620033-24620090)
chr3 (293-333)||(10872628-10872668)
chr3 (370-410)||(10872852-10872892)
chr3 (230-286)||(20756259-20756315)
[»] chr4 (32 HSPs)
chr4 (311-458)||(8743708-8743855)
chr4 (290-411)||(9149633-9149752)
chr4 (290-388)||(18403651-18403747)
chr4 (290-410)||(7044864-7044982)
chr4 (290-402)||(8011046-8011156)
chr4 (290-447)||(55476040-55476194)
chr4 (290-352)||(6346865-6346927)
chr4 (302-352)||(8020723-8020773)
chr4 (290-371)||(8409720-8409800)
chr4 (290-458)||(20812580-20812749)
chr4 (290-402)||(4156962-4157071)
chr4 (467-548)||(18437672-18437752)
chr4 (290-380)||(7045073-7045161)
chr4 (312-374)||(5846050-5846112)
chr4 (320-409)||(7825152-7825239)
chr4 (294-352)||(10394768-10394826)
chr4 (290-352)||(24719732-24719794)
chr4 (230-402)||(18459467-18459636)
chr4 (317-402)||(22060666-22060751)
chr4 (242-346)||(5943107-5943214)
chr4 (467-548)||(18327646-18327727)
chr4 (178-235)||(46664149-46664207)
chr4 (181-286)||(9770349-9770463)
chr4 (304-345)||(46664228-46664269)
chr4 (370-409)||(7803198-7803237)
chr4 (230-285)||(37240477-37240532)
chr4 (290-352)||(5884203-5884265)
chr4 (230-276)||(6346791-6346837)
chr4 (293-346)||(7452669-7452722)
chr4 (337-409)||(7815749-7815819)
chr4 (230-286)||(23064797-23064853)
chr4 (300-352)||(27527955-27528007)
[»] chr5 (18 HSPs)
chr5 (309-458)||(187813-187961)
chr5 (290-448)||(41427469-41427625)
chr5 (302-458)||(19377653-19377808)
chr5 (290-411)||(24648117-24648236)
chr5 (290-458)||(15446250-15446418)
chr5 (290-352)||(15052014-15052075)
chr5 (290-402)||(22984724-22984835)
chr5 (290-348)||(9996893-9996951)
chr5 (293-347)||(43005772-43005826)
chr5 (293-352)||(13348812-13348872)
chr5 (364-542)||(13341647-13341826)
chr5 (309-352)||(26021478-26021521)
chr5 (220-263)||(26021579-26021622)
chr5 (309-402)||(30804032-30804123)
chr5 (230-286)||(19042264-19042320)
chr5 (238-286)||(23172272-23172320)
chr5 (494-542)||(29270096-29270144)
chr5 (230-286)||(43005695-43005751)
[»] scaffold1178 (1 HSPs)
scaffold1178 (290-402)||(430-541)
[»] chr7 (18 HSPs)
chr7 (290-458)||(1981246-1981411)
chr7 (290-402)||(25842654-25842764)
chr7 (290-410)||(26565458-26565575)
chr7 (290-402)||(23618352-23618462)
chr7 (217-402)||(21157515-21157702)
chr7 (290-352)||(8254029-8254090)
chr7 (302-402)||(8629662-8629759)
chr7 (290-458)||(8304125-8304292)
chr7 (290-352)||(17809037-17809099)
chr7 (290-347)||(30294408-30294465)
chr7 (290-373)||(7307135-7307216)
chr7 (230-285)||(22687103-22687158)
chr7 (291-458)||(4574764-4574935)
chr7 (228-282)||(23618263-23618317)
chr7 (230-263)||(11326543-11326576)
chr7 (230-286)||(8304323-8304379)
chr7 (237-285)||(8329822-8329870)
chr7 (223-283)||(30294486-30294546)
[»] chr1 (19 HSPs)
chr1 (302-399)||(12002793-12002890)
chr1 (290-402)||(17197451-17197561)
chr1 (310-542)||(24117462-24117694)
chr1 (360-458)||(39845208-39845304)
chr1 (290-345)||(16434674-16434730)
chr1 (290-408)||(17055829-17055943)
chr1 (332-458)||(8773013-8773138)
chr1 (290-402)||(18891504-18891614)
chr1 (354-448)||(16434587-16434682)
chr1 (181-286)||(18304596-18304703)
chr1 (313-409)||(27917303-27917396)
chr1 (230-286)||(14074319-14074375)
chr1 (181-285)||(41032551-41032664)
chr1 (299-352)||(16446676-16446730)
chr1 (230-299)||(12002695-12002764)
chr1 (230-283)||(17055755-17055808)
chr1 (244-285)||(21242877-21242918)
chr1 (293-333)||(8773432-8773471)
chr1 (230-286)||(23528893-23528949)
[»] scaffold0027 (1 HSPs)
scaffold0027 (302-402)||(133049-133148)
[»] scaffold0017 (1 HSPs)
scaffold0017 (312-406)||(38475-38569)
[»] scaffold0684 (1 HSPs)
scaffold0684 (290-402)||(5135-5245)
[»] scaffold0259 (1 HSPs)
scaffold0259 (290-352)||(18541-18603)
[»] scaffold0182 (1 HSPs)
scaffold0182 (290-352)||(24531-24592)
[»] scaffold0603 (1 HSPs)
scaffold0603 (290-410)||(8869-8987)
[»] scaffold0001 (2 HSPs)
scaffold0001 (290-402)||(142726-142835)
scaffold0001 (230-286)||(142866-142922)
[»] scaffold0163 (1 HSPs)
scaffold0163 (290-402)||(2873-2983)
[»] scaffold0150 (1 HSPs)
scaffold0150 (230-285)||(33176-33231)
[»] scaffold0048 (2 HSPs)
scaffold0048 (230-285)||(61150-61205)
scaffold0048 (290-338)||(48572-48620)
[»] scaffold0186 (1 HSPs)
scaffold0186 (230-286)||(8678-8734)
[»] scaffold0061 (1 HSPs)
scaffold0061 (312-352)||(76257-76297)
[»] scaffold0526 (1 HSPs)
scaffold0526 (290-352)||(8302-8362)
[»] scaffold0016 (1 HSPs)
scaffold0016 (181-286)||(56203-56317)


Alignment Details
Target: chr6 (Bit Score: 166; Significance: 2e-88; HSPs: 27)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 20 - 297
Target Start/End: Original strand, 20399691 - 20399977
Alignment:
Q  20 ttcagccacctcatatacttgtttgtatatacaaaaattcaaactgcattaatcttttatttacaataatatgtagtaattttacatccaaatctagata 119  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  20399691 ttcagccacatcatatacttgtttgtatatacaaaaattcaaactgcattaatcttttatttacaataatatatagtaattttacatccaaatctagata 20399790  T
Q  120 aacgtgattaaatatttctcatgcaaattagctctataaattatcagatg-tttgagttaatgttgtcaaaattgggactttactttaggttgaaagaaa 218  Q
    ||| |||||||||||||||||||||||||||||||||||||||  ||| | |||||||||||| ||| |||||||||||||| ||| || ||||||| |     
T  20399791 aacatgattaaatatttctcatgcaaattagctctataaattaagagaggttttgagttaatgatgttaaaattgggactttgcttcagattgaaaggat 20399890  T
Q  219 tagcaaaatcg--------aaaatcacaatcaaaattgaagaattttactcaattagttttgtagagtcgatatagagtatcaaaat 297  Q
    ||| |||| ||        ||||||||||| |||||||||||||||||||||| | |||||||||| | ||||||| ||||||||||    
T  20399891 tagaaaaaacgaaaattgtaaaatcacaataaaaattgaagaattttactcaacttgttttgtagaattgatatagggtatcaaaat 20399977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 30 - 167
Target Start/End: Original strand, 20432260 - 20432397
Alignment:
Q  30 tcatatacttgtttgtatatacaaaaattcaaactgcattaatcttttatttacaataatatgtagtaattttacatccaaatctagataaacgtgatta 129  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||    
T  20432260 tcatatacttgtttgtatatacaaaaactcaaactccattaatcttttatttacgataatatatagtaattttacatccaaatctagataaacgtgatta 20432359  T
Q  130 aatatttctcatgcaaattagctctataaattatcaga 167  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  20432360 aatatttctcatgcaaattagctctataaattaacaga 20432397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 290 - 526
Target Start/End: Original strand, 20432516 - 20432751
Alignment:
Q  290 atcaaaatcgatggattccaccaaaacaaaaataatgttaaatatatgttataaattgcatatggttatgaataactcaaagtttaaagtccacaaaatt 389  Q
    ||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||||||| || || ||||||||||| ||| |||||||||||||     
T  20432516 atcaaaatcgatggattccaccaaaacaaaaataatactaa-tatatgttataaattgcatatagtcataaataactcaaaattttaagtccacaaaata 20432614  T
Q  390 cttatacataaataactaaaatcttagataccagatattttttattagtcataataatactaaacaacc-cnnnnnnntacttaatgacaaatcctagat 488  Q
    ||| ||||||||| |||||||||||| ||  || || ||||||||||||||||||||||||||||||||         ||||||| ||||||| ||||||    
T  20432615 cttttacataaatgactaaaatcttacatgacaaatgttttttattagtcataataatactaaacaacctaaacaaaatacttaaagacaaat-ctagat 20432713  T
Q  489 gtgtgacaaaatactttattataagtgaggaagtgact 526  Q
    || |||||||||||||||| ||||||||| ||||||||    
T  20432714 gtctgacaaaatactttatcataagtgagaaagtgact 20432751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 290 - 433
Target Start/End: Original strand, 20399996 - 20400140
Alignment:
Q  290 atcaaaatcgatggattccaccaaaacaaaaataatgttaaatatatgttataaattgcatatggttatgaataactcaaagtttaaagtccacaaaatt 389  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || || |||||||||| ||||||||||||||||||     
T  20399996 atcaaaatcgatggattccaccaaaacaaaaataatgataaatatatgttataaattgcatatagtcataaataactcaatgtttaaagtccacaaaata 20400095  T
Q  390 ctt-atacataaataactaaaatcttagataccagatatttttta 433  Q
    ||| | |||||||| ||||||||||||||| ||| ||||||||||    
T  20400096 cttaacacataaattactaaaatcttagatgccatatatttttta 20400140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 290 - 447
Target Start/End: Complemental strand, 31407515 - 31407358
Alignment:
Q  290 atcaaaatcgatggattccaccaaaacaaaaataatgttaaatatatgttataaattgcatatggttatgaataactcaaagtttaaagtccacaaaatt 389  Q
    |||||| |||| | |||| |||||||||||||||||||||||||||||||||||||||||||| || || ||| |||||||||||||| ||||||||||     
T  31407515 atcaaagtcgacgcattctaccaaaacaaaaataatgttaaatatatgttataaattgcatattgtcataaatgactcaaagtttaaattccacaaaata 31407416  T
Q  390 cttatacataaataactaaaatcttagataccagatattttttattagtcataataat 447  Q
    ||||||||||||| |||||||   ||||| ||| ||||  |||| |||||||||||||    
T  31407415 cttatacataaatgactaaaagtctagatgccaaatatactttagtagtcataataat 31407358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 290 - 458
Target Start/End: Original strand, 33593073 - 33593241
Alignment:
Q  290 atcaaaatcgatggattccaccaaaacaaaaataatgttaaatatatgttataaattgcatatggttatgaataactcaaagtttaaagtccacaaaatt 389  Q
    |||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||| || || | | ||||||||||| ||||| |||||||     
T  33593073 atcaaaatcgatggattctaccaaaagaaaaataatgttaaacatatgttataaattgcatatagtcattattgactcaaagtttcaagtctacaaaata 33593172  T
Q  390 cttatacataaataactaaaatcttagataccagatattttttattagtcataataatactaaacaacc 458  Q
    ||||||||||||| ||| ||| |||| ||  || ||||| | || || |||||||||| ||||||||||    
T  33593173 cttatacataaatgactcaaagcttaaatgtcaaatattctatagtaatcataataatgctaaacaacc 33593241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 290 - 458
Target Start/End: Complemental strand, 27890592 - 27890426
Alignment:
Q  290 atcaaaatcgatggattccaccaaaacaaaaataatgttaaatatatgttataaattgcatatggttatgaataactcaaagtttaaagtccacaaaatt 389  Q
    ||||||||||| | |||| |||||||||||||||||| ||||||||||||||||||||||||| || || ||| | | |||||| ||||||||||||||     
T  27890592 atcaaaatcga-gaattctaccaaaacaaaaataatgctaaatatatgttataaattgcatatagtcataaatgagttaaagttcaaagtccacaaaata 27890494  T
Q  390 cttatacataaataactaaaatcttagataccagatattttttattagtcataataatactaaacaacc 458  Q
    | |||| ||||||  || ||| | |||||  || ||||| |||| ||||||||||||| ||||||||||    
T  27890493 catatatataaatgtctcaaagcctagat-gcaaatattctttagtagtcataataatgctaaacaacc 27890426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 426 - 577
Target Start/End: Original strand, 20400227 - 20400381
Alignment:
Q  426 attttttattagtcataataatactaaacaacccnnnnnnn-tacttaat-gacaaatcctagatgtgtga-caaaatactttattataagtgaggaagt 522  Q
    |||||||||||||||||||||||||||||||||         || ||||  |||||||||||||||| ||| ||||||||||||| |||||||| | |||    
T  20400227 attttttattagtcataataatactaaacaacctaaacaaaatagttaaaagacaaatcctagatgtctgaacaaaatactttatcataagtgaaggagt 20400326  T
Q  523 gactattaagtttcaaggcacagaaaacgaacatccaatctggatgaaaaggaaa 577  Q
    || |||||||||||||| || ||||||||||||| |||| |||||||| ||||||    
T  20400327 gaatattaagtttcaagacaaagaaaacgaacatgcaatttggatgaagaggaaa 20400381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 371 - 540
Target Start/End: Complemental strand, 28669455 - 28669286
Alignment:
Q  371 gtttaaagtccacaaaattcttatacataaataactaaaatcttagataccagatattttttattagtcataataatactaaacaac-ccnnnnnnntac 469  Q
    ||||||| |||||||||| ||||||||||||| ||| ||| | |||||  || ||||| |||| |||||||||||||||||||||||          |||    
T  28669455 gtttaaattccacaaaatacttatacataaatgactcaaagcctagatgtcaaatattctttagtagtcataataatactaaacaacttagacaaaatac 28669356  T
Q  470 ttaatgacaaatcctagatgtgtgacaaaatactttattataagtgaggaagtgactattaagtttcaagg 540  Q
    |||| | |||||||||||||||||||||||||| |||| ||||| ||  ||||||||||||||||||||||    
T  28669355 ttaaaggcaaatcctagatgtgtgacaaaatac-ttatcataagcgaataagtgactattaagtttcaagg 28669286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 303 - 458
Target Start/End: Original strand, 7621902 - 7622058
Alignment:
Q  303 gattccaccaaaacaaaaataatgttaaatatatgttataaattgcatatggttatgaataactc-aaagtttaaagtccacaaaattcttatacataaa 401  Q
    ||||| |||||||||||||||||| ||||||||| ||||||||||| ||| || || ||| | || ||||||| |||| || ||||| ||||||||||||    
T  7621902 gattctaccaaaacaaaaataatgataaatatatattataaattgcctatagtcataaatgattcaaaagtttcaagttcataaaatacttatacataaa 7622001  T
Q  402 taactaaaatcttagataccagatattttttattagtcataataatactaaacaacc 458  Q
    | ||| ||||| |||||  || ||||| |||| ||||||| |||||  |||||||||    
T  7622002 tgactcaaatcctagatgtcaaatattctttagtagtcatgataatgataaacaacc 7622058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 290 - 407
Target Start/End: Original strand, 18490549 - 18490664
Alignment:
Q  290 atcaaaatcgatggattccaccaaaacaaaaataatgttaaatatatgttataaattgcatatggttatgaataactcaaagtttaaagtccacaaaatt 389  Q
    |||||||| ||||||||| |||||| ||||||||||| |||||||||||||||||| | |||| ||  | ||||||||  ||| |||||||||||||||     
T  18490549 atcaaaattgatggattctaccaaatcaaaaataatgataaatatatgttataaatcgtatatagtgctaaataactc--agtataaagtccacaaaata 18490646  T
Q  390 cttatacataaataacta 407  Q
    | ||||||||||| ||||    
T  18490647 catatacataaatgacta 18490664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 511 - 577
Target Start/End: Original strand, 20432766 - 20432833
Alignment:
Q  511 aagtgaggaagtgactattaagtttcaaggcacagaaaa-cgaacatccaatctggatgaaaaggaaa 577  Q
    |||||||||| ||||||||||||||||||||||| |||| ||||||| ||||||||||| ||||||||    
T  20432766 aagtgaggaaatgactattaagtttcaaggcacaaaaaagcgaacatgcaatctggatgtaaaggaaa 20432833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 230 - 286
Target Start/End: Original strand, 20432429 - 20432485
Alignment:
Q  230 aaaatcacaatcaaaattgaagaattttactcaattagttttgtagagtcgatatag 286  Q
    |||||| |||||||||||||||||||||||| || |||||||||||| |||||||||    
T  20432429 aaaatcgcaatcaaaattgaagaattttacttaactagttttgtagaatcgatatag 20432485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 313 - 388
Target Start/End: Complemental strand, 645470 - 645395
Alignment:
Q  313 aaacaaaaataatgttaaatatatgttataaattgcatatggttatgaataactcaaagtttaaagtccacaaaat 388  Q
    |||||| ||||||| ||||||||||||||||||||||||| || || ||| ||||||||||| |||| || |||||    
T  645470 aaacaataataatgctaaatatatgttataaattgcatatagtcataaatgactcaaagtttcaagtgcaaaaaat 645395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 187 - 276
Target Start/End: Complemental strand, 20981456 - 20981366
Alignment:
Q  187 aaaattgggactttactttaggttgaaag-aaatagcaaaatcgaaaatcacaatcaaaattgaagaattttactcaattagttttgtaga 276  Q
    ||||| |||||||| ||||||||| |||| ||||||||||||| ||||||  |||||||||  ||||||||||||||| |  |||||||||    
T  20981456 aaaatcgggacttttctttaggtttaaaggaaatagcaaaatccaaaatcgtaatcaaaatcaaagaattttactcaactgcttttgtaga 20981366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 181 - 286
Target Start/End: Original strand, 11327340 - 11327454
Alignment:
Q  181 gttgtcaaaattgggactttactttaggttgaaaga-aatagcaaaatcga--------aaatcacaatcaaaattgaagaattttactcaattagtttt 271  Q
    ||||||||||| ||| |||||||| ||||||||||  ||||||||||||||        ||||| |||||||||| ||||||||||||||||  | ||||    
T  11327340 gttgtcaaaatcggggctttacttcaggttgaaagggaatagcaaaatcgagactcgtaaaatcgcaatcaaaatcgaagaattttactcaaggactttt 11327439  T
Q  272 gtagagtcgatatag 286  Q
    ||||| |||||||||    
T  11327440 gtagaatcgatatag 11327454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 290 - 402
Target Start/End: Complemental strand, 31108361 - 31108252
Alignment:
Q  290 atcaaaatcgatggattccaccaaaacaaaaataatgttaaatatatgttataaattgcatatggttatgaataactcaaagtttaaagtccacaaaatt 389  Q
    ||||||||||| |||||| | |||||||||| ||| | |||||| |||||||||||||||||  || || ||| ||| |||||| ||||||| ||||||     
T  31108361 atcaaaatcga-ggattctaacaaaacaaaagtaaagctaaatacatgttataaattgcata--gtcataaatgacttaaagttcaaagtccgcaaaata 31108265  T
Q  390 cttatacataaat 402  Q
    | |||||||||||    
T  31108264 catatacataaat 31108252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 309 - 402
Target Start/End: Original strand, 24209649 - 24209744
Alignment:
Q  309 accaaaacaaaaataatgttaaatatatgttataaat--tgcatatggttatgaataactcaaagtttaaagtccacaaaattcttatacataaat 402  Q
    |||||||||||| |||| |||||||| ||||||| ||  ||||||| || || ||||||||||| ||| |||| |||||||| |||||||| ||||    
T  24209649 accaaaacaaaattaatattaaatatgtgttatacatattgcatatagtcataaataactcaaaatttcaagttcacaaaatacttatacaaaaat 24209744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 290 - 410
Target Start/End: Original strand, 4841739 - 4841855
Alignment:
Q  290 atcaaaatcgatggattccaccaaaacaaaaataatgttaaatatatgttataaattgcatatggttatgaataactcaaagtttaaagtccacaaaatt 389  Q
    ||||||||||||| |||  |||||||||||||  |||  |||||||||||||||||||  ||| || || ||| ||||   |||||||||||| |||||     
T  4841739 atcaaaatcgatgtattttaccaaaacaaaaaatatgcaaaatatatgttataaattg--tatagtcataaattactc--ggtttaaagtccataaaatg 4841834  T
Q  390 cttatacataaataactaaaa 410  Q
     |||||||||||| |||||||    
T  4841835 tttatacataaatgactaaaa 4841855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 309 - 346
Target Start/End: Original strand, 5422588 - 5422625
Alignment:
Q  309 accaaaacaaaaataatgttaaatatatgttataaatt 346  Q
    |||||||||||||||||| |||||||||||||||||||    
T  5422588 accaaaacaaaaataatgctaaatatatgttataaatt 5422625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 181 - 286
Target Start/End: Complemental strand, 19748684 - 19748570
Alignment:
Q  181 gttgtcaaaattgggactttactttaggttgaaaga-aatagcaaaatcg--------aaaatcacaatcaaaattgaagaattttactcaattagtttt 271  Q
    ||||||||||| ||||||||| || ||||||||||  |||||||||||||        |||||| |||||||||| |||| |||||||||||  | ||||    
T  19748684 gttgtcaaaatcgggactttaattcaggttgaaagggaatagcaaaatcgggattcgtaaaatcgcaatcaaaatcgaaggattttactcaaggactttt 19748585  T
Q  272 gtagagtcgatatag 286  Q
    ||||| |||||||||    
T  19748584 gtagaatcgatatag 19748570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 181 - 286
Target Start/End: Original strand, 22498218 - 22498332
Alignment:
Q  181 gttgtcaaaattgggactttactttaggttgaaaga-aatagcaaaatcg--------aaaatcacaatcaaaattgaagaattttactcaattagtttt 271  Q
    |||||||||||||||||||||||| |||| |||||  ||||||||||| |        |||||| ||||||||||||||  |||||||||||  | ||||    
T  22498218 gttgtcaaaattgggactttacttcaggtcgaaagggaatagcaaaattgggactcgtaaaatcgcaatcaaaattgaacgattttactcaaagactttt 22498317  T
Q  272 gtagagtcgatatag 286  Q
    ||||| |||||||||    
T  22498318 gtagaatcgatatag 22498332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 315 - 402
Target Start/End: Complemental strand, 7857188 - 7857101
Alignment:
Q  315 acaaaaataatgttaaatatatgttataaatt-gcatatggttatgaataactcaaagtttaaagtccacaaaattcttatacataaat 402  Q
    |||||||||||| ||||||| | ||||| ||| ||| ||||| || ||| ||||||||||| | ||||||||||| |||||||||||||    
T  7857188 acaaaaataatgctaaatattt-ttatacatttgcaaatggtcataaatgactcaaagtttgaggtccacaaaatacttatacataaat 7857101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 276
Target Start/End: Original strand, 7621820 - 7621857
Alignment:
Q  239 atcaaaattgaagaattttactcaattagttttgtaga 276  Q
    ||||||||||||||||||||||||| || |||||||||    
T  7621820 atcaaaattgaagaattttactcaactacttttgtaga 7621857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 286
Target Start/End: Original strand, 15527945 - 15528002
Alignment:
Q  229 gaaaatcacaatcaaaattgaagaattttactcaattagttttgtagagtcgatatag 286  Q
    ||||||| |||||||||| |||| |||||||||||  | ||||||||| |||||||||    
T  15527945 gaaaatcgcaatcaaaatcgaaggattttactcaaggacttttgtagaatcgatatag 15528002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 293 - 352
Target Start/End: Original strand, 4596780 - 4596842
Alignment:
Q  293 aaaatcgatggattccaccaaaaca---aaaataatgttaaatatatgttataaattgcatat 352  Q
    ||||||| ||||||| |||||||||   ||||||||| |||||| ||||||| ||||||||||    
T  4596780 aaaatcggtggattctaccaaaacagcaaaaataatgctaaatacatgttattaattgcatat 4596842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 238 - 286
Target Start/End: Complemental strand, 27890671 - 27890623
Alignment:
Q  238 aatcaaaattgaagaattttactcaattagttttgtagagtcgatatag 286  Q
    |||||||||||||| |||||||||||  | ||||||||| |||||||||    
T  27890671 aatcaaaattgaaggattttactcaaggacttttgtagaatcgatatag 27890623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 2e-38; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 294 - 447
Target Start/End: Complemental strand, 19245800 - 19245647
Alignment:
Q  294 aaatcgatggattccaccaaaacaaaaataatgttaaatatatgttataaattgcatatggttatgaataactcaaagtttaaagtccacaaaattctta 393  Q
    |||||||||||||| ||||||| ||||||||||||||||||||| || ||||||||| | || || ||| ||||||||||||||||||||||||| |||     
T  19245800 aaatcgatggattctaccaaaataaaaataatgttaaatatatgatagaaattgcatgtagtcataaatgactcaaagtttaaagtccacaaaatacttt 19245701  T
Q  394 tacataaataactaaaatcttagataccagatattttttattagtcataataat 447  Q
    | ||||||| ||||||| ||||||||||| | ||| |||| |||||||||||||    
T  19245700 tgcataaatgactaaaagcttagataccaaaaattctttactagtcataataat 19245647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 290 - 447
Target Start/End: Complemental strand, 974544 - 974389
Alignment:
Q  290 atcaaaatcgatggattccaccaaaacaaaaataatgttaaatatatgttataaattgcatatggttatgaataactcaaagtttaaagtccacaaaatt 389  Q
    ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| || || ||| ||| |||||| ||||||||||||||     
T  974544 atcaaaatcga-ggattctaccaaaacaaaaataatgttaaatatatgttataaattgcatatagtcataaatgacttaaagttcaaagtccacaaaata 974446  T
Q  390 cttatacataaataactaaaatcttagataccagatattttttattagtcataataat 447  Q
    | ||||||||||| ||| ||| | |||||  || ||||| |||| |||||||||||||    
T  974445 catatacataaatgactcaaagcctagat-gcaaatattctttagtagtcataataat 974389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 290 - 458
Target Start/End: Complemental strand, 41002231 - 41002066
Alignment:
Q  290 atcaaaatcgatggattccaccaaaacaaaaataatgttaaatatatgttataaattgcatatggttatgaataactcaaagtttaaagtccacaaaatt 389  Q
    ||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||| || || ||| ||| |||||| ||||||||||||||     
T  41002231 atcaaaatcga-ggattctaccaaaacaaaaataatgctaaatatatgttataaattgcatatagtcataaatgact-aaagttcaaagtccacaaaata 41002134  T
Q  390 cttatacataaataactaaaatcttagataccagatattttttattagtcataataatactaaacaacc 458  Q
    | ||||||||||| ||| ||| | |||||  || |||||||||| ||||||||||||| ||||| ||||    
T  41002133 catatacataaatgactcaaaacctagat-gcaaatattttttagtagtcataataatgctaaataacc 41002066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 290 - 402
Target Start/End: Original strand, 21869244 - 21869355
Alignment:
Q  290 atcaaaatcgatggattccaccaaaacaaaaataatgttaaatatatgttataaattgcatatggttatgaataactcaaagtttaaagtccacaaaatt 389  Q
    ||||||||||||| |||| |||||||||||||| ||| ||||||||||||||||||||||||| || || ||||||| |||||| ||||||||||||||     
T  21869244 atcaaaatcgatg-attctaccaaaacaaaaattatgctaaatatatgttataaattgcatatagtcataaataacttaaagttcaaagtccacaaaata 21869342  T
Q  390 cttatacataaat 402  Q
    | |||||||||||    
T  21869343 catatacataaat 21869355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 290 - 401
Target Start/End: Complemental strand, 7301993 - 7301884
Alignment:
Q  290 atcaaaatcgatggattccaccaaaacaaaaataatgttaaatatatgttataaattgcatatggttatgaataactcaaagtttaaagtccacaaaatt 389  Q
    ||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||| || ||| ||| |||||| ||||||||||||||     
T  7301993 atcaaaatcga-ggattctaccaaaataaaaataatgttaaatatatgttataaattgcatatggtcataaatgact-aaagttcaaagtccacaaaata 7301896  T
Q  390 cttatacataaa 401  Q
    | ||| ||||||    
T  7301895 catatgcataaa 7301884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 290 - 402
Target Start/End: Complemental strand, 34578095 - 34577987
Alignment:
Q  290 atcaaaatcgatggattccaccaaaacaaaaataatgttaaatatatgttataaattgcatatggttatgaataactcaaagtttaaagtccacaaaatt 389  Q
    ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||  || || ||| ||| |||||| ||||||||||||||     
T  34578095 atcaaaatcga-ggattctaccaaaacaaaaataatgttaaatatatgttataaattgcata--gtcataaatgact-aaagttcaaagtccacaaaata 34578000  T
Q  390 cttatacataaat 402  Q
    | |||||||||||    
T  34577999 catatacataaat 34577987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 293 - 399
Target Start/End: Complemental strand, 24474037 - 24473931
Alignment:
Q  293 aaaatcgatggattccaccaaaacaaaaataatgttaaatatatgttataaattgcatatggttatgaataactcaaagtttaaagtccacaaaattctt 392  Q
    ||||||| ||||||| |||||||||||| ||||| |||||| ||| |||||||||||||| ||||| ||| ||| |||||| ||| |||||||||| |||    
T  24474037 aaaatcgttggattctaccaaaacaaaattaatgataaatagatgatataaattgcatatagttataaatgactaaaagttaaaattccacaaaatactt 24473938  T
Q  393 atacata 399  Q
    |||||||    
T  24473937 atacata 24473931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 290 - 407
Target Start/End: Complemental strand, 27407010 - 27406895
Alignment:
Q  290 atcaaaatcgatggattccaccaaaacaaaaataatgttaaatatatgttataaattgcatatggttatgaataactcaaagtttaaagtccacaaaatt 389  Q
    |||||||| |||||||| ||||||||||||||||||| ||||||||| ||||||| || |||| || || ||| ||||  |||||||||||||||||||     
T  27407010 atcaaaattgatggatttcaccaaaacaaaaataatgctaaatatatattataaactgtatatagtaataaatgactc--agtttaaagtccacaaaata 27406913  T
Q  390 cttatacataaataacta 407  Q
    | ||||||||||| ||||    
T  27406912 catatacataaatgacta 27406895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 290 - 410
Target Start/End: Original strand, 25539055 - 25539173
Alignment:
Q  290 atcaaaatcgatggattccaccaaaacaaaaataatgttaaatatatgttataaattgcatatggttatgaataactcaaagtttaaagtccacaaaatt 389  Q
    |||||||||||| ||||  ||||||||| |||||||| ||||||||||||||| |||| |||| || || ||| ||||  |||||||||||||||||||     
T  25539055 atcaaaatcgatagattttaccaaaacagaaataatgctaaatatatgttatatattgtatatagtcataaatgactc--agtttaaagtccacaaaata 25539152  T
Q  390 cttatacataaataactaaaa 410  Q
    |||||| |||||| |||||||    
T  25539153 cttataaataaatgactaaaa 25539173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 290 - 408
Target Start/End: Complemental strand, 19492152 - 19492035
Alignment:
Q  290 atcaaaatcgatggattccaccaaaacaaa-aataatgttaaatatatgttataaattgcatatggttatgaataactcaaagtttaaagtccacaaaat 388  Q
    |||||||||||||||||  ||||||| ||| ||||||| |||||||||||||||||||| |||| || || ||||||||   |||||||||||||| |||    
T  19492152 atcaaaatcgatggattttaccaaaaaaaataataatgctaaatatatgttataaattgtatatagtcataaataactc--tgtttaaagtccacagaat 19492055  T
Q  389 tcttatacataaataactaa 408  Q
     ||||||||||||| |||||    
T  19492054 acttatacataaatgactaa 19492035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 290 - 456
Target Start/End: Complemental strand, 26251735 - 26251567
Alignment:
Q  290 atcaaaatcgatggattccaccaaaa-caaaaataatgttaaatatatgttataaattgcatatggttatgaataactc-aaagtttaaagtccacaaaa 387  Q
    |||||||||| | ||||| ||||||| ||||||||||| ||||||||||||||||||||||||| || || ||| |||| ||||||| ||||||||||||    
T  26251735 atcaaaatcggtagattctaccaaaatcaaaaataatggtaaatatatgttataaattgcatatagtcataaatgactcaaaagtttcaagtccacaaaa 26251636  T
Q  388 ttcttatacataaataactaaaatcttagataccagatattttttattagtcataataatactaaacaa 456  Q
    | | |||| |||||| ||| |||   |||||| || ||||| | || | ||||| ||||| ||||||||    
T  26251635 tacctataaataaattactcaaagtctagatatcaaatattctctagtggtcatgataatgctaaacaa 26251567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 290 - 352
Target Start/End: Original strand, 20034145 - 20034206
Alignment:
Q  290 atcaaaatcgatggattccaccaaaacaaaaataatgttaaatatatgttataaattgcatat 352  Q
    ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  20034145 atcaaaatcga-ggattctaccaaaacaaaaataatgttaaatatatgttataaattgcatat 20034206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 290 - 387
Target Start/End: Complemental strand, 34841800 - 34841705
Alignment:
Q  290 atcaaaatcgatggattccaccaaaacaaaaataatgttaaatatatgttataaattgcatatggttatgaataactcaaagtttaaagtccacaaaa 387  Q
    |||||||||||||||||| | | |||||||||||||  |||||||||||||||||||| |||| || || ||||||||  ||||||||||||||||||    
T  34841800 atcaaaatcgatggattctatccaaacaaaaataataataaatatatgttataaattgtatatagtcataaataactc--agtttaaagtccacaaaa 34841705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 290 - 457
Target Start/End: Complemental strand, 19519593 - 19519433
Alignment:
Q  290 atcaaaatcgatggattccaccaaaacaaaaataatgttaaatatatgttataaattgcatatggttatgaataactcaaagtttaaagtccacaaaatt 389  Q
    |||||||| ||| ||||| || ||||| ||||||||| |||||||||||||||||||||||||       ||  ||||||||||| |||| ||||||||     
T  19519593 atcaaaattgatagattctacaaaaaccaaaataatgctaaatatatgttataaattgcatat-------aacgactcaaagtttcaagttcacaaaata 19519501  T
Q  390 cttatacataaataactaaaatcttagataccagatattttttattagtcataataatactaaacaac 457  Q
    |||| |||||||| ||| ||| | |||||  || ||||| |||| ||||||||||||| || ||||||    
T  19519500 cttaaacataaatgactcaaaacctagatgtcaaatattatttagtagtcataataatgctgaacaac 19519433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 332 - 542
Target Start/End: Original strand, 27749713 - 27749924
Alignment:
Q  332 tatatgttataaattgcatatggttatgaataactcaaagtttaaagtccacaaaattcttatacataaataactaaaatcttagataccagatattttt 431  Q
    ||||||||||||||||||| | || || ||| |||||||||| |||||| ||||||| | || |||||||| ||| ||| | |||||  || ||||| ||    
T  27749713 tatatgttataaattgcatgtagtcataaatgactcaaagttcaaagtctacaaaatacatacacataaatgactcaaagcctagatgtcaaatattatt 27749812  T
Q  432 tattagtcataataatactaaacaacc-cnnnnnnntacttaatgacaaatcctagatgtgtgacaaaatactttattataagtgaggaagtgactatta 530  Q
    || |||||||||||||  |||||||||         ||||||| |  ||||| || |||| ||||||||||||| || |||| |||  ||||| ||||||    
T  27749813 tagtagtcataataatgttaaacaacctaaacaaaatacttaaaggaaaatcatatatgtctgacaaaatacttgatcataaatgactaagtggctatta 27749912  T
Q  531 agtttcaaggca 542  Q
    ||||||||||||    
T  27749913 agtttcaaggca 27749924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 290 - 345
Target Start/End: Original strand, 13502583 - 13502638
Alignment:
Q  290 atcaaaatcgatggattccaccaaaacaaaaataatgttaaatatatgttataaat 345  Q
    |||||||||||||||||  ||||||||||||||||| |||||||||||||||||||    
T  13502583 atcaaaatcgatggattttaccaaaacaaaaataatattaaatatatgttataaat 13502638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 290 - 345
Target Start/End: Complemental strand, 31023521 - 31023466
Alignment:
Q  290 atcaaaatcgatggattccaccaaaacaaaaataatgttaaatatatgttataaat 345  Q
    |||||||||||||||||  ||||||| |||||||||||||||||||||||||||||    
T  31023521 atcaaaatcgatggattttaccaaaataaaaataatgttaaatatatgttataaat 31023466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 290 - 410
Target Start/End: Original strand, 5395432 - 5395551
Alignment:
Q  290 atcaaaatcgatggattccaccaaaacaaaaataatgttaaatatatgttataaattgcatatggttatgaataactcaaagtttaaagtccacaaaatt 389  Q
    |||||||||||  ||||  |||||||||||||||||||| || ||||||||||||||| |||| || || ||| || |||  |||||||||||| ||||     
T  5395432 atcaaaatcgaaagattttaccaaaacaaaaataatgttcaaaatatgttataaattgtatatagtcataaatgacccaa--tttaaagtccaccaaata 5395529  T
Q  390 c-ttatacataaataactaaaa 410  Q
    | |||||||||||| |||||||    
T  5395530 ctttatacataaatgactaaaa 5395551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 290 - 352
Target Start/End: Original strand, 27524019 - 27524080
Alignment:
Q  290 atcaaaatcgatggattccaccaaaacaaaaataatgttaaatatatgttataaattgcatat 352  Q
    ||||||||||| || ||| |||||||||||||||||||||||||||| |||||||||||||||    
T  27524019 atcaaaatcgaggg-ttctaccaaaacaaaaataatgttaaatatatattataaattgcatat 27524080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 181 - 286
Target Start/End: Complemental strand, 20064074 - 20063960
Alignment:
Q  181 gttgtcaaaattgggactttactttaggttgaaaga-aatagcaaaatcga--------aaatcacaatcaaaattgaagaattttactcaattagtttt 271  Q
    ||||||||||| ||| |||||||| ||||||||||  ||||||||||||||        ||||| |||||||||| ||||||||||||||||  | ||||    
T  20064074 gttgtcaaaatcggggctttacttcaggttgaaagggaatagcaaaatcgagactcgtaaaatcgcaatcaaaatcgaagaattttactcaaggactttt 20063975  T
Q  272 gtagagtcgatatag 286  Q
    ||||| |||||||||    
T  20063974 gtagaatcgatatag 20063960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 309 - 387
Target Start/End: Complemental strand, 16766986 - 16766910
Alignment:
Q  309 accaaaacaaaaataatgttaaatatatgttataaattgcatatggttatgaataactcaaagtttaaagtccacaaaa 387  Q
    |||||||||||||||||| ||||||| |||||||||||| |||  || || ||| ||||  ||||||||||||||||||    
T  16766986 accaaaacaaaaataatgctaaatatttgttataaattgtatacagtcataaatgactc--agtttaaagtccacaaaa 16766910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 230 - 285
Target Start/End: Complemental strand, 16767078 - 16767023
Alignment:
Q  230 aaaatcacaatcaaaattgaagaattttactcaattagttttgtagagtcgatata 285  Q
    |||||| ||||||||||||||| ||||||||||| || |||| |||| ||||||||    
T  16767078 aaaatcgcaatcaaaattgaaggattttactcaactacttttatagaatcgatata 16767023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 287
Target Start/End: Original strand, 20034058 - 20034115
Alignment:
Q  230 aaaatcacaatcaaaattgaagaattttactcaattagttttgtagagtcgatataga 287  Q
    |||||| ||||||||||||||| |||||||||||  | ||||||||| ||||| ||||    
T  20034058 aaaatcgcaatcaaaattgaaggattttactcaaggacttttgtagaatcgatgtaga 20034115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 230 - 286
Target Start/End: Complemental strand, 974631 - 974575
Alignment:
Q  230 aaaatcacaatcaaaattgaagaattttactcaattagttttgtagagtcgatatag 286  Q
    |||||| |||||||||| |||| |||||||||||  | ||||||||| |||||||||    
T  974631 aaaatcgcaatcaaaatcgaaggattttactcaaggacttttgtagaatcgatatag 974575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 230 - 286
Target Start/End: Complemental strand, 1405076 - 1405020
Alignment:
Q  230 aaaatcacaatcaaaattgaagaattttactcaattagttttgtagagtcgatatag 286  Q
    |||||| |||||||||| |||| |||||||||||  | ||||||||| |||||||||    
T  1405076 aaaatcgcaatcaaaatcgaaggattttactcaagaacttttgtagaatcgatatag 1405020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 294 - 346
Target Start/End: Complemental strand, 8428437 - 8428385
Alignment:
Q  294 aaatcgatggattccaccaaaacaaaaataatgttaaatatatgttataaatt 346  Q
    ||||||||| |||  |||||||||||||||||| ||| ||||| |||||||||    
T  8428437 aaatcgatgaattataccaaaacaaaaataatgctaactatatattataaatt 8428385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 3e-28; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 290 - 458
Target Start/End: Original strand, 26575033 - 26575200
Alignment:
Q  290 atcaaaatcgatggattccaccaaaacaaaaataatgttaaatatatgttataaattgcatatggttatgaataactcaaagtttaaagtccacaaaatt 389  Q
    |||||||||||||||||| |||||||||||| | ||| |||| ||||||| ||||||| ||||  | || ||| |||||||||||||||||||||||||     
T  26575033 atcaaaatcgatggattctaccaaaacaaaattgatgctaaaaatatgttttaaattgaatataatcataaatgactcaaagtttaaagtccacaaaata 26575132  T
Q  390 cttatacataaataactaaaatcttagataccagatattttttattagtcataataatactaaacaacc 458  Q
    ||||||||||||| | |||| || ||||||  | ||||| |||| | |||||||||||  |||||||||    
T  26575133 cttatacataaatgaataaagtc-tagatatgaaatattctttagttgtcataataatgttaaacaacc 26575200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 290 - 352
Target Start/End: Original strand, 15761268 - 15761330
Alignment:
Q  290 atcaaaatcgatggattccaccaaaacaaaaataatgttaaatatatgttataaattgcatat 352  Q
    |||||||||||||||||  |||||||||||||||||| |||||||||||||||||||| ||||    
T  15761268 atcaaaatcgatggattttaccaaaacaaaaataatgctaaatatatgttataaattgtatat 15761330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 302 - 447
Target Start/End: Original strand, 40541754 - 40541898
Alignment:
Q  302 ggattccaccaaaacaaaa-ataatgttaaatatatgttataaattgcatatggttatgaataactcaaagtttaaagtccacaaaattcttatacataa 400  Q
    |||||| |||||||||||| |||||||||||||||||||||||||||||||| || || ||| ||| |||||| || || |||||||| | |||||||||    
T  40541754 ggattcaaccaaaacaaaaaataatgttaaatatatgttataaattgcatatagtcataaatgact-aaagttcaaggtacacaaaatacgtatacataa 40541852  T
Q  401 ataactaaaatcttagataccagatattttttattagtcataataat 447  Q
    || ||| ||| | |||||  || || || |||| |||||||||||||    
T  40541853 atgactcaaagcatagat-gcaaatgttctttagtagtcataataat 40541898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 290 - 402
Target Start/End: Complemental strand, 16752229 - 16752119
Alignment:
Q  290 atcaaaatcgatggattccaccaaaacaaaaataatgttaaatatatgttataaattgcatatggttatgaataactcaaagtttaaagtccacaaaatt 389  Q
    ||||||||||| |||| | || ||||||||||||||||||||||||||||||||||||||||| || || ||| | | |||||| ||||| || |||||     
T  16752229 atcaaaatcga-ggatactactaaaacaaaaataatgttaaatatatgttataaattgcatatagtcataaatgagt-aaagttcaaagttcataaaata 16752132  T
Q  390 cttatacataaat 402  Q
    | |||||||||||    
T  16752131 catatacataaat 16752119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 290 - 400
Target Start/End: Original strand, 1018091 - 1018199
Alignment:
Q  290 atcaaaatcgatggattccaccaaaacaaaaataatgttaaatatatgttataaattgcatatggttatgaataactcaaagtttaaagtccacaaaatt 389  Q
    |||||||||||| ||||| ||||||| |||||||||||||||| |||||||||||||  |||| || || ||| || |  | ||||||||| |||||||     
T  1018091 atcaaaatcgatagattctaccaaaataaaaataatgttaaatgtatgttataaattatatatagtcataaatgaccc--actttaaagtcaacaaaata 1018188  T
Q  390 cttatacataa 400  Q
    |||||||||||    
T  1018189 cttatacataa 1018199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 290 - 343
Target Start/End: Complemental strand, 2040325 - 2040273
Alignment:
Q  290 atcaaaatcgatggattccaccaaaacaaaaataatgttaaatatatgttataa 343  Q
    ||||||||||| |||||| |||||||||||||||||||||||||||||||||||    
T  2040325 atcaaaatcga-ggattctaccaaaacaaaaataatgttaaatatatgttataa 2040273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 290 - 402
Target Start/End: Complemental strand, 8582262 - 8582153
Alignment:
Q  290 atcaaaatcgatggattccaccaaaacaaaaataatgttaaatatatgttataaattgcatatggttatgaataactcaaagtttaaagtccacaaaatt 389  Q
    ||||||||||||| |||  ||||||||| |||||||||||||||||||||||| |||| |  | ||||| ||| ||  |   |||||||||||||||||     
T  8582262 atcaaaatcgatgaattttaccaaaacataaataatgttaaatatatgttatacattgtaattagttataaattaccga---tttaaagtccacaaaata 8582166  T
Q  390 cttatacataaat 402  Q
     ||||||||||||    
T  8582165 tttatacataaat 8582153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 230 - 285
Target Start/End: Complemental strand, 17647290 - 17647235
Alignment:
Q  230 aaaatcacaatcaaaattgaagaattttactcaattagttttgtagagtcgatata 285  Q
    |||||| |||||||||| |||| ||||||||||| |||||||||||| ||||||||    
T  17647290 aaaatcgcaatcaaaatcgaaggattttactcaactagttttgtagaatcgatata 17647235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 345
Target Start/End: Original strand, 30240280 - 30240335
Alignment:
Q  290 atcaaaatcgatggattccaccaaaacaaaaataatgttaaatatatgttataaat 345  Q
    |||||||| ||||||||| |||||||||||||||||  ||||||||| | ||||||    
T  30240280 atcaaaattgatggattctaccaaaacaaaaataatactaaatatatatcataaat 30240335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 345
Target Start/End: Complemental strand, 45403249 - 45403194
Alignment:
Q  290 atcaaaatcgatggattccaccaaaacaaaaataatgttaaatatatgttataaat 345  Q
    |||||||||||| ||||  ||||||| || |||||| |||||||||||||||||||    
T  45403249 atcaaaatcgatagattttaccaaaaaaataataatattaaatatatgttataaat 45403194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 346
Target Start/End: Complemental strand, 26879794 - 26879737
Alignment:
Q  290 atcaaaatcgatggattccaccaaaacaaaaa-taatgttaaatatatgttataaatt 346  Q
    |||||||| ||||||||| || |||||||||| | ||| |||||||||||||||||||    
T  26879794 atcaaaattgatggattctacaaaaacaaaaaatcatgctaaatatatgttataaatt 26879737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 290 - 345
Target Start/End: Complemental strand, 6811039 - 6810986
Alignment:
Q  290 atcaaaatcgatggattccaccaaaacaaaaataatgttaaatatatgttataaat 345  Q
    |||||||||||||||||  |||||||  ||||||||  ||||||||||||||||||    
T  6811039 atcaaaatcgatggattttaccaaaa--aaaataatactaaatatatgttataaat 6810986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 173 - 209
Target Start/End: Complemental strand, 19335334 - 19335298
Alignment:
Q  173 gagttaatgttgtcaaaattgggactttactttaggt 209  Q
    ||||||| ||||||||||| |||||||||||||||||    
T  19335334 gagttaaggttgtcaaaatcgggactttactttaggt 19335298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 230 - 286
Target Start/End: Original strand, 24414123 - 24414179
Alignment:
Q  230 aaaatcacaatcaaaattgaagaattttactcaattagttttgtagagtcgatatag 286  Q
    |||||| |||||||||| |||| |||||||||||  | ||||||||| |||||||||    
T  24414123 aaaatcgcaatcaaaatcgaaggattttactcaagaatttttgtagaatcgatatag 24414179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 3e-28; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 290 - 538
Target Start/End: Original strand, 6861049 - 6861298
Alignment:
Q  290 atcaaaatcgatggattccaccaaaacaaaaataatgttaaatatatgttataaattgcatatggttatgaataactcaaagtttaaagtccacaaaatt 389  Q
    |||||||||||||||||| |||||||||||||||| | ||| ||||||||||||||||  ||| || || ||| | || ||||||||||| |||||||      
T  6861049 atcaaaatcgatggattctaccaaaacaaaaataaagctaactatatgttataaattgtctatagtcataaatgattcgaagtttaaagtgcacaaaaca 6861148  T
Q  390 cttatacataaataactaaaatcttagataccagatattttttattagtcataataatactaaacaacc-cnnnnnnntacttaatgacaaatcctagat 488  Q
     ||||||||| || ||| ||| | ||||| ||| ||||| |||| || |||||||||| ||||||||||         |||| || | | ||||||||||    
T  6861149 tttatacatatatgactcaaaacctagatgccaaatattatttagtaatcataataatgctaaacaacctagacaaaatactcaaaggcgaatcctagat 6861248  T
Q  489 gtgtgacaaaatactttattataagtgaggaagtgactattaagtttcaa 538  Q
    || |||||||| |||| || ||||||||  ||||||||||||| ||||||    
T  6861249 gtctgacaaaacacttgatcataagtgattaagtgactattaaatttcaa 6861298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 290 - 402
Target Start/End: Complemental strand, 22971015 - 22970904
Alignment:
Q  290 atcaaaatcgatggattccaccaaaacaaaaataatgttaaatatatgttataaattgcatatggttat-gaataactcaaagtttaaagtccacaaaat 388  Q
    ||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||| || ||  ||| ||| |||||| ||||||||||||||    
T  22971015 atcaaaatcga-ggattctaccaaaacaaaaataatgttatatatatgttataaattgcatatagtcataaaatgact-aaagttcaaagtccacaaaat 22970918  T
Q  389 tcttatacataaat 402  Q
     | |||||||||||    
T  22970917 acatatacataaat 22970904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 302 - 388
Target Start/End: Original strand, 8592333 - 8592419
Alignment:
Q  302 ggattccaccaaaacaaaaataatgttaaatatatgttataaattgcatatggttatgaataactcaaagtttaaagtccacaaaat 388  Q
    |||||| |||||||||||||||||| ||||||||||||||||||||||||| || || ||| ||| ||||||  |||||||||||||    
T  8592333 ggattctaccaaaacaaaaataatgataaatatatgttataaattgcatatagtcataaatgacttaaagttcgaagtccacaaaat 8592419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 290 - 352
Target Start/End: Complemental strand, 9169879 - 9169818
Alignment:
Q  290 atcaaaatcgatggattccaccaaaacaaaaataatgttaaatatatgttataaattgcatat 352  Q
    ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  9169879 atcaaaatcga-ggattctaccaaaacaaaaataatgttaaatatatgttataaattgcatat 9169818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 290 - 403
Target Start/End: Complemental strand, 18014197 - 18014088
Alignment:
Q  290 atcaaaatcgatggattccaccaaaacaaaaataatgttaaatatatgttataaattgcatatggttatgaataactcaaagtttaaagtccacaaaatt 389  Q
    ||||||||||| |||||| | |||||||||||||||| ||||||||||||||||||||||||  || || ||| ||| |||||| ||||||||||||||     
T  18014197 atcaaaatcga-ggattctatcaaaacaaaaataatgctaaatatatgttataaattgcata--gtcataaatgact-aaagttcaaagtccacaaaata 18014102  T
Q  390 cttatacataaata 403  Q
    | ||||||||||||    
T  18014101 catatacataaata 18014088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 290 - 410
Target Start/End: Complemental strand, 27676655 - 27676538
Alignment:
Q  290 atcaaaatcgatggattccaccaaaacaaaaataatgttaaatatatgttataaattgcatatggttatgaataactcaaagtttaaagtccacaaaatt 389  Q
    ||||||||| |||||||  ||||||||||||| ||||||||||||||||||||||||  |||| || || ||| ||||   ||||||| ||||||||||     
T  27676655 atcaaaatcaatggattttaccaaaacaaaaacaatgttaaatatatgttataaattatatatagtcataaatgactc--ggtttaaa-tccacaaaata 27676559  T
Q  390 cttatacataaataactaaaa 410  Q
    ||||||||||||| |||||||    
T  27676558 cttatacataaatgactaaaa 27676538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 290 - 402
Target Start/End: Complemental strand, 19348759 - 19348649
Alignment:
Q  290 atcaaaatcgatggattccaccaaaacaaaaataatgttaaatatatgttataaattgcatatggttatgaataactcaaagtttaaagtccacaaaatt 389  Q
    ||||||||||| |||||  |||||||||||||||||||||||||||||||||||||||||||| || || ||| ||| | | || |||||||||| |||     
T  19348759 atcaaaatcga-ggattataccaaaacaaaaataatgttaaatatatgttataaattgcatatagtcataaatgact-ataattcaaagtccacataata 19348662  T
Q  390 cttatacataaat 402  Q
    | |||||||||||    
T  19348661 catatacataaat 19348649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 290 - 351
Target Start/End: Complemental strand, 23649446 - 23649385
Alignment:
Q  290 atcaaaatcgatggattccaccaaaacaaaaataatgttaaatatatgttataaattgcata 351  Q
    |||||||||||||  || ||||||| ||||||||||||||||||||||||||||||||||||    
T  23649446 atcaaaatcgatgagtttcaccaaagcaaaaataatgttaaatatatgttataaattgcata 23649385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 181 - 286
Target Start/End: Complemental strand, 28746127 - 28746013
Alignment:
Q  181 gttgtcaaaattgggactttactttaggttgaaag-aaatagcaaaatcg--------aaaatcacaatcaaaattgaagaattttactcaattagtttt 271  Q
    |||||||||||||||||||||||| |||| ||||| ||||||||||||||        |||||| |||||||||| ||||||||||||||||  | ||||    
T  28746127 gttgtcaaaattgggactttacttcaggtcgaaagaaaatagcaaaatcgggactcgtaaaatcgcaatcaaaatcgaagaattttactcaagaactttt 28746028  T
Q  272 gtagagtcgatatag 286  Q
    ||||| |||||||||    
T  28746027 gtagaatcgatatag 28746013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 302 - 352
Target Start/End: Complemental strand, 10591840 - 10591790
Alignment:
Q  302 ggattccaccaaaacaaaaataatgttaaatatatgttataaattgcatat 352  Q
    |||||| |||||||||||||||||| |||||||||||||||||||||||||    
T  10591840 ggattctaccaaaacaaaaataatgctaaatatatgttataaattgcatat 10591790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 290 - 347
Target Start/End: Original strand, 15806293 - 15806350
Alignment:
Q  290 atcaaaatcgatggattccaccaaaacaaaaataatgttaaatatatgttataaattg 347  Q
    |||| ||| ||||||||| |||||||||||||||||| ||||||||||||||||||||    
T  15806293 atcagaattgatggattctaccaaaacaaaaataatgctaaatatatgttataaattg 15806350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 290 - 352
Target Start/End: Original strand, 21553815 - 21553880
Alignment:
Q  290 atcaaaatcgatggattccaccaaaacaaaaataatgtt----aaatatatgttataaattgcatat 352  Q
    ||||||||||| |||||| ||||||||||||||||||||    ||||||||||||||||||||||||    
T  21553815 atcaaaatcga-ggattctaccaaaacaaaaataatgttgactaaatatatgttataaattgcatat 21553880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 293 - 345
Target Start/End: Complemental strand, 3041426 - 3041375
Alignment:
Q  293 aaaatcgatggattccaccaaaacaaaaataatgttaaatatatgttataaat 345  Q
    |||||||| |||||| ||||||||||||||||||||||||||||| |||||||    
T  3041426 aaaatcga-ggattctaccaaaacaaaaataatgttaaatatatgctataaat 3041375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 230 - 285
Target Start/End: Complemental strand, 21963724 - 21963669
Alignment:
Q  230 aaaatcacaatcaaaattgaagaattttactcaattagttttgtagagtcgatata 285  Q
    |||||||||| ||||||| |||||||||||||||||| |||| |||| ||||||||    
T  21963724 aaaatcacaaccaaaattaaagaattttactcaattacttttatagaatcgatata 21963669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 230 - 285
Target Start/End: Complemental strand, 21986160 - 21986105
Alignment:
Q  230 aaaatcacaatcaaaattgaagaattttactcaattagttttgtagagtcgatata 285  Q
    |||||||||| ||||||| |||||||||||||||||| |||| |||| ||||||||    
T  21986160 aaaatcacaaccaaaattaaagaattttactcaattacttttatagaatcgatata 21986105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 309 - 347
Target Start/End: Complemental strand, 28135962 - 28135924
Alignment:
Q  309 accaaaacaaaaataatgttaaatatatgttataaattg 347  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  28135962 accaaaacaaaaataatgttaaacatatgttataaattg 28135924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 181 - 235
Target Start/End: Original strand, 3449088 - 3449143
Alignment:
Q  181 gttgtcaaaattgggactttactttaggttgaaaga-aatagcaaaatcgaaaatc 235  Q
    |||||||||||||||| ||| ||||||||||||||| || ||||||||||| ||||    
T  3449088 gttgtcaaaattgggattttgctttaggttgaaagagaagagcaaaatcgacaatc 3449143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 349
Target Start/End: Original strand, 8560380 - 8560437
Alignment:
Q  290 atcaaaatcgatggattccaccaaaacaaaaataatgttaaatatatgttataaattgca 349  Q
    ||||||||||||| |||| ||||||| |||| ||||| ||||||||||||||||||||||    
T  8560380 atcaaaatcgatg-attctaccaaaataaaa-taatgctaaatatatgttataaattgca 8560437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 230 - 285
Target Start/End: Complemental strand, 22137570 - 22137515
Alignment:
Q  230 aaaatcacaatcaaaattgaagaattttactcaattagttttgtagagtcgatata 285  Q
    |||||||||| ||||||  ||||||||||||||| || ||||||||| ||||||||    
T  22137570 aaaatcacaaccaaaatcaaagaattttactcaactacttttgtagaatcgatata 22137515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 352
Target Start/End: Complemental strand, 27055306 - 27055267
Alignment:
Q  313 aaacaaaaataatgttaaatatatgttataaattgcatat 352  Q
    |||||||||||||| |||||||||||| ||||||||||||    
T  27055306 aaacaaaaataatgctaaatatatgttgtaaattgcatat 27055267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 290 - 340
Target Start/End: Original strand, 6136479 - 6136529
Alignment:
Q  290 atcaaaatcgatggattccaccaaaacaaaaataatgttaaatatatgtta 340  Q
    |||||||||||||||||  |||||||||||||||||  ||| |||||||||    
T  6136479 atcaaaatcgatggattttaccaaaacaaaaataatactaactatatgtta 6136529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 181 - 299
Target Start/End: Original strand, 8592177 - 8592304
Alignment:
Q  181 gttgtcaaaattgggactttactttaggttgaaag-aaatagcaaaatcga--------aaatcacaatcaaaattgaagaattttactcaattagtttt 271  Q
    |||||| |||| |||||||||||| | || ||||| |||||||||||||||        ||||| |||||||||| |||| |||||||||||  | ||||    
T  8592177 gttgtcgaaatcgggactttacttcaagtcgaaaggaaatagcaaaatcgagactcgtaaaatcgcaatcaaaatcgaaggattttactcaaggactttt 8592276  T
Q  272 gtagagtcgatatagagtatcaaaatcg 299  Q
    ||||| |||||||||  || ||||||||    
T  8592277 gtagaatcgatataggatagcaaaatcg 8592304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 452
Target Start/End: Original strand, 8566180 - 8566295
Alignment:
Q  335 atgttataaattgcatatggttatgaataactcaaagtttaaagtccacaaaattcttatacataaataactaaaatcttagataccagatattttttat 434  Q
    |||||||||||||||||| || || ||| ||| ||||||  ||||||||||||| | ||||||||||| ||| ||| | |||||  ||  |||| ||||     
T  8566180 atgttataaattgcatatagtcataaatgact-aaagttcgaagtccacaaaatacatatacataaatgactcaaagcctagat-gcaattattctttag 8566277  T
Q  435 tagtcataataatactaa 452  Q
    ||||||||||||| ||||    
T  8566278 tagtcataataatgctaa 8566295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 287
Target Start/End: Original strand, 24620033 - 24620090
Alignment:
Q  230 aaaatcacaatcaaaattgaagaattttactcaattagttttgtagagtcgatataga 287  Q
    |||||| |||||||||| |||| |||||||||||  | ||||||||| ||||||||||    
T  24620033 aaaatcgcaatcaaaatcgaaggattttactcaaagacttttgtagaatcgatataga 24620090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 293 - 333
Target Start/End: Original strand, 10872628 - 10872668
Alignment:
Q  293 aaaatcgatggattccaccaaaacaaaaataatgttaaata 333  Q
    ||||| ||||||||  |||||||||||||||||||||||||    
T  10872628 aaaattgatggattttaccaaaacaaaaataatgttaaata 10872668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 370 - 410
Target Start/End: Original strand, 10872852 - 10872892
Alignment:
Q  370 agtttaaagtccacaaaattcttatacataaataactaaaa 410  Q
    ||||||||||||||||||| |||| |||||||| |||||||    
T  10872852 agtttaaagtccacaaaatacttaaacataaatgactaaaa 10872892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 230 - 286
Target Start/End: Complemental strand, 20756315 - 20756259
Alignment:
Q  230 aaaatcacaatcaaaattgaagaattttactcaattagttttgtagagtcgatatag 286  Q
    |||||| ||||||||||||||  |||||||||||  | ||||||||| |||||||||    
T  20756315 aaaatcgcaatcaaaattgaaagattttactcaaggatttttgtagaatcgatatag 20756259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 1e-27; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 311 - 458
Target Start/End: Original strand, 8743708 - 8743855
Alignment:
Q  311 caaaacaaaaataatgttaaatatatgttataaattgcatatggttatgaataactcaaagtttaaagtccacaaaattcttatacataaataactaaaa 410  Q
    ||||||||||||||||||||||||||||| |||||||   || || || ||| ||||||||||||||||| ||||||| ||| ||||||||| ||| |||    
T  8743708 caaaacaaaaataatgttaaatatatgttttaaattgttcatagtcataaatgactcaaagtttaaagtctacaaaatacttgtacataaatgactcaaa 8743807  T
Q  411 tcttagataccagatattttttattagtcataataatactaaacaacc 458  Q
     |||||||  || ||||| |||| |||||||||||||  |||||||||    
T  8743808 gcttagatgtcaaatattctttagtagtcataataatgttaaacaacc 8743855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 290 - 411
Target Start/End: Original strand, 9149633 - 9149752
Alignment:
Q  290 atcaaaatcgatggattccaccaaaacaaaaataatgttaaatatatgttataaattgcatatggttatgaataactcaaagtttaaagtccacaaaatt 389  Q
    |||||||| ||| ||||  ||||||| |||||||||| |||||||||||||||||||| |||| ||||| ||| ||||  || |||||||||| |||||     
T  9149633 atcaaaattgatagattttaccaaaagaaaaataatgctaaatatatgttataaattgtatatagttataaatgactc--agcttaaagtccaaaaaata 9149730  T
Q  390 cttatacataaataactaaaat 411  Q
    ||||||||||||| ||||||||    
T  9149731 cttatacataaatgactaaaat 9149752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 290 - 388
Target Start/End: Complemental strand, 18403747 - 18403651
Alignment:
Q  290 atcaaaatcgatggattccaccaaaacaaaaataatgttaaatatatgttataaattgcatatggttatgaataactcaaagtttaaagtccacaaaat 388  Q
    ||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||| |||| || |||||| ||||||| || ||||||||||||||    
T  18403747 atcaaaatcgaag-attctaccaaaacaaaaataatgttaaatatatgttataaattgtatatagtcatgaatgactcaaa-ttcaaagtccacaaaat 18403651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 290 - 410
Target Start/End: Complemental strand, 7044982 - 7044864
Alignment:
Q  290 atcaaaatcgatggattccaccaaaacaaaaataatgttaaatatatgttataaattgcatatggttatgaataactcaaagtttaaagtccacaaaatt 389  Q
    |||||||||||||||||  ||||||||||||||||||||||| || |||||||| ||| |||| || || ||| ||||  ||||||||||| |||| ||     
T  7044982 atcaaaatcgatggattttaccaaaacaaaaataatgttaaacatgtgttataatttgtatatagtgataaatgactc--agtttaaagtcgacaagata 7044885  T
Q  390 cttatacataaataactaaaa 410  Q
    ||||||||||||| |||||||    
T  7044884 cttatacataaatgactaaaa 7044864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 290 - 402
Target Start/End: Original strand, 8011046 - 8011156
Alignment:
Q  290 atcaaaatcgatggattccaccaaaacaaaaataatgttaaatatatgttataaattgcatatggttatgaataactcaaagtttaaagtccacaaaatt 389  Q
    ||||||||||||| |||  |||||||||||||||||| |||||||||||||||||||| ||||  |||| ||| | |   |||||||||||||||||||     
T  8011046 atcaaaatcgatgtattttaccaaaacaaaaataatgctaaatatatgttataaattgtatataattataaatgaat--tagtttaaagtccacaaaata 8011143  T
Q  390 cttatacataaat 402  Q
    |||||||||||||    
T  8011144 cttatacataaat 8011156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 290 - 447
Target Start/End: Complemental strand, 55476194 - 55476040
Alignment:
Q  290 atcaaaatcgatggattccaccaaaacaaaaataatgttaaatatatgttataaattgcatatggttatgaataactcaaagtttaaagtccacaaaatt 389  Q
    ||||||||||| |||||| ||||||||||||||||||  |||||||||||||||||||||||| || || ||| ||| |||||| ||||| ||||||||     
T  55476194 atcaaaatcga-ggattctaccaaaacaaaaataatgcaaaatatatgttataaattgcatatagtcataaatgact-aaagttcaaagtacacaaaata 55476097  T
Q  390 cttatacataaataactaaaatcttagataccagatattttttattagtcataataat 447  Q
    | ||||||||||| | | ||| | |||||  || ||||| |||| |||||||||||||    
T  55476096 catatacataaatgattcaaagcctagat-gcaaatattctttagtagtcataataat 55476040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 290 - 352
Target Start/End: Original strand, 6346865 - 6346927
Alignment:
Q  290 atcaaaatcgatggattccaccaaaacaaaaataatgttaaatatatgttataaattgcatat 352  Q
    ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||    
T  6346865 atcaaaatcgatggatttcaccaaaacaaaaataatgataaatatatgttataaattgtatat 6346927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 302 - 352
Target Start/End: Original strand, 8020723 - 8020773
Alignment:
Q  302 ggattccaccaaaacaaaaataatgttaaatatatgttataaattgcatat 352  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  8020723 ggattctaccaaaacaaaaataatgttaaatatatgttataaattgcatat 8020773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 290 - 371
Target Start/End: Complemental strand, 8409800 - 8409720
Alignment:
Q  290 atcaaaatcgatggattccaccaaaacaaaaataatgttaaatatatgttataaattgcatatggttatgaataactcaaag 371  Q
    ||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||| ||||| || || ||| ||||||||    
T  8409800 atcaaaatcga-ggattctaccaaaacaaaaataatgctaaatatatgttataaattacatatagtcataaatgactcaaag 8409720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 290 - 458
Target Start/End: Complemental strand, 20812749 - 20812580
Alignment:
Q  290 atcaaaatcgatggattccaccaaaacaaaaataatgttaaatata--tgttataaattgcatatggttatgaataactcaaagtttaaagtccacaaaa 387  Q
    ||||| ||||| |||||| ||||||| |||| ||||| ||||||||  | ||||||| ||||||| || || ||| ||||||||||| ||||| ||||||    
T  20812749 atcaagatcgaaggattctaccaaaagaaaa-taatgctaaatataaatattataaagtgcatatagtcataaatgactcaaagtttcaagtctacaaaa 20812651  T
Q  388 ttcttatacataaataactaaaatcttagataccagatattttttattagtcataataatactaaacaacc 458  Q
    | |||||| |||||| ||  ||| | || ||  || ||||| |||| ||||||||||||| ||||||||||    
T  20812650 tacttataaataaatgacacaaagcatatatgtcaaatattctttagtagtcataataatgctaaacaacc 20812580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 290 - 402
Target Start/End: Complemental strand, 4157071 - 4156962
Alignment:
Q  290 atcaaaatcgatggattccaccaaaacaaaaataatgttaaatatatgttataaattgcatatggttatgaataactcaaagtttaaagtccacaaaatt 389  Q
    |||||||||||||||||  || ||||||||||||||||| |||||||||||| ||||| |||| || || ||| | ||   ||||||||| ||||||||     
T  4157071 atcaaaatcgatggattttactaaaacaaaaataatgttgaatatatgttat-aattgtatatagtgataaatgattc--ggtttaaagttcacaaaata 4156975  T
Q  390 cttatacataaat 402  Q
    |||||||||||||    
T  4156974 cttatacataaat 4156962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 467 - 548
Target Start/End: Original strand, 18437672 - 18437752
Alignment:
Q  467 tacttaatgacaaatcctagatgtgtgacaaaatactttattataagtgaggaagtgactattaagtttcaaggcacagaaa 548  Q
    ||||||| |||||||||||||||| ||||||||||||| || ||||||||| ||||| ||| ||||||| |||||| |||||    
T  18437672 tacttaaagacaaatcctagatgtttgacaaaatacttgatcataagtgagaaagtggcta-taagttttaaggcaaagaaa 18437752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 290 - 380
Target Start/End: Complemental strand, 7045161 - 7045073
Alignment:
Q  290 atcaaaatcgatggattccaccaaaacaaaaataatgttaaatatatgttataaattgcatatggttatgaataactcaaagtttaaagtc 380  Q
    ||||||||| ||||||   ||||||||||||||||||||||||||||||||||| ||| |||| || || ||| ||||  |||||||||||    
T  7045161 atcaaaatctatggatcttaccaaaacaaaaataatgttaaatatatgttataatttgtatatagtgataaatgactc--agtttaaagtc 7045073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 312 - 374
Target Start/End: Original strand, 5846050 - 5846112
Alignment:
Q  312 aaaacaaaaataatgttaaatatatgttataaattgcatatggttatgaataactcaaagttt 374  Q
    ||||||||||||||| |||||||||||||||||||| |||| || || ||| |||||||||||    
T  5846050 aaaacaaaaataatgctaaatatatgttataaattgtatattgtcataaatgactcaaagttt 5846112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 320 - 409
Target Start/End: Complemental strand, 7825239 - 7825152
Alignment:
Q  320 aataatgttaaatatatgttataaattgcatatggttatgaataactcaaagtttaaagtccacaaaattcttatacataaataactaaa 409  Q
    ||||||| |||||| | ||||||||||| |||| || || ||| |||||  |||||||||||||||||| ||||||||||||| ||||||    
T  7825239 aataatgctaaatacaagttataaattgtatatagtcataaatgactca--gtttaaagtccacaaaatacttatacataaatgactaaa 7825152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 294 - 352
Target Start/End: Complemental strand, 10394826 - 10394768
Alignment:
Q  294 aaatcgatggattccaccaaaacaaaaataatgttaaatatatgttataaattgcatat 352  Q
    ||||||||||||   |||||||||||||||||| |||||||||||||||||||| ||||    
T  10394826 aaatcgatggatattaccaaaacaaaaataatggtaaatatatgttataaattgtatat 10394768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 290 - 352
Target Start/End: Complemental strand, 24719794 - 24719732
Alignment:
Q  290 atcaaaatcgatggattccaccaaaacaaaaataatgttaaatatatgttataaattgcatat 352  Q
    |||||||||||||  ||  |||||| |||||||||||||||||||||||||||||||| ||||    
T  24719794 atcaaaatcgatgagttttaccaaagcaaaaataatgttaaatatatgttataaattgtatat 24719732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 230 - 402
Target Start/End: Original strand, 18459467 - 18459636
Alignment:
Q  230 aaaatcacaatcaaaattgaagaattttactcaattagttttgtagagtcgatatagagtatcaaaatcgatggattccaccaaaacaaaaataatgtta 329  Q
    |||||| |||| ||||| |||| |||| ||| || || ||||||||| | ||||||    |||||||||||||| ||   ||||||||||| ||| | ||    
T  18459467 aaaatcgcaattaaaatcgaaggatttgacttaactaattttgtagaattgatataagaaatcaaaatcgatggctttg-ccaaaacaaaagtaacgcta 18459565  T
Q  330 aatatatgttataaattgcatatggttatgaataactcaaagtttaaagtccacaaaattcttatacataaat 402  Q
    |||||||||||| || || |||| || || ||| ||||   |||||||||||||||||| |||||||||||||    
T  18459566 aatatatgttatgaactgtatatagtcataaatgactcg--gtttaaagtccacaaaatacttatacataaat 18459636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 317 - 402
Target Start/End: Original strand, 22060666 - 22060751
Alignment:
Q  317 aaaaataatgttaaatatatgttataaattgcatatggttatgaataactcaaagtttaaagtccacaaaattcttatacataaat 402  Q
    |||||||||| ||||||||||| |||||||| || | || || |||   ||||||||| ||||||||||||| |||||||||||||    
T  22060666 aaaaataatgctaaatatatgtaataaattgtatgtagtcataaatgtatcaaagtttcaagtccacaaaatacttatacataaat 22060751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 242 - 346
Target Start/End: Original strand, 5943107 - 5943214
Alignment:
Q  242 aaaattgaagaattttactcaattagttttgtagagtcgatatagagtatc--aaaatcgatggattccaccaaaacaaaaataatgttaaatat-atgt 338  Q
    |||||||||| ||||||||||| || ||||||||| ||| | ||    |||  ||||||||||||||  ||||||| |||||||||||||||||| ||||    
T  5943107 aaaattgaaggattttactcaactacttttgtagaatcggtttaagaaatcgtaaaatcgatggattttaccaaaataaaaataatgttaaatataatgt 5943206  T
Q  339 tataaatt 346  Q
    ||||||||    
T  5943207 tataaatt 5943214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 467 - 548
Target Start/End: Complemental strand, 18327727 - 18327646
Alignment:
Q  467 tacttaatgacaaatcctagatgtgtgacaaaat-actttattataagtgaggaagtgactattaagtttcaaggcacagaaa 548  Q
    ||||||| |||||||||||||||| ||||||||| |||| || ||||||||| ||||| ||| ||||||| |||||| |||||    
T  18327727 tacttaaagacaaatcctagatgtttgacaaaataacttgatcataagtgagaaagtggcta-taagttttaaggcaaagaaa 18327646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 178 - 235
Target Start/End: Original strand, 46664149 - 46664207
Alignment:
Q  178 aatgttgtcaaaattgggactttactttaggttgaaa-gaaatagcaaaatcgaaaatc 235  Q
    ||||||||||||||||||| ||| ||| |||| |||| |||||||||||||||||||||    
T  46664149 aatgttgtcaaaattgggattttgcttcaggtcgaaaagaaatagcaaaatcgaaaatc 46664207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 181 - 286
Target Start/End: Complemental strand, 9770463 - 9770349
Alignment:
Q  181 gttgtcaaaattgggactttactttaggttgaaa-gaaatagcaaaatcg--------aaaatcacaatcaaaattgaagaattttactcaattagtttt 271  Q
    ||||||||||| ||||||||||||||||| |||| | |||||||||||||        |||||| |||||||||| |||| |||||||||||    ||||    
T  9770463 gttgtcaaaatcgggactttactttaggtcgaaagggaatagcaaaatcgggactcgtaaaatcgcaatcaaaatcgaaggattttactcaaggtctttt 9770364  T
Q  272 gtagagtcgatatag 286  Q
    ||||| |||||||||    
T  9770363 gtagaatcgatatag 9770349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 304 - 345
Target Start/End: Original strand, 46664228 - 46664269
Alignment:
Q  304 attccaccaaaacaaaaataatgttaaatatatgttataaat 345  Q
    ||||||||||||||||||||||| ||||||||| ||||||||    
T  46664228 attccaccaaaacaaaaataatgctaaatatatattataaat 46664269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 370 - 409
Target Start/End: Complemental strand, 7803237 - 7803198
Alignment:
Q  370 agtttaaagtccacaaaattcttatacataaataactaaa 409  Q
    ||||||||||||||||||| ||||||||||||| ||||||    
T  7803237 agtttaaagtccacaaaatacttatacataaatgactaaa 7803198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 230 - 285
Target Start/End: Complemental strand, 37240532 - 37240477
Alignment:
Q  230 aaaatcacaatcaaaattgaagaattttactcaattagttttgtagagtcgatata 285  Q
    |||||| |||||||||| |||| ||||||||||| || ||||||||| ||||||||    
T  37240532 aaaatcgcaatcaaaatcgaaggattttactcaactacttttgtagaatcgatata 37240477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 290 - 352
Target Start/End: Original strand, 5884203 - 5884265
Alignment:
Q  290 atcaaaatcgatggattccaccaaaacaaaaataatgttaaatatatgttataaattgcatat 352  Q
    |||||||| ||||||||  || ||||||||| ||||| ||||  |||||||||||||||||||    
T  5884203 atcaaaatagatggattttacaaaaacaaaagtaatgctaaaagtatgttataaattgcatat 5884265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 230 - 276
Target Start/End: Original strand, 6346791 - 6346837
Alignment:
Q  230 aaaatcacaatcaaaattgaagaattttactcaattagttttgtaga 276  Q
    ||||||||||||||||| |||| ||||||||||| || |||||||||    
T  6346791 aaaatcacaatcaaaatcgaaggattttactcaactacttttgtaga 6346837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 346
Target Start/End: Complemental strand, 7452722 - 7452669
Alignment:
Q  293 aaaatcgatggattccaccaaaacaaaaataatgttaaatatatgttataaatt 346  Q
    ||||||||||||||    |||||||||||||||| | |||||||||||||||||    
T  7452722 aaaatcgatggattttgtcaaaacaaaaataatgcttaatatatgttataaatt 7452669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 409
Target Start/End: Complemental strand, 7815819 - 7815749
Alignment:
Q  337 gttataaattgcatatggttatgaataactcaaagtttaaagtccacaaaattcttatacataaataactaaa 409  Q
    ||||||||||| |||| || || ||| |||||  |||||||||||||| ||| ||||||||||||| ||||||    
T  7815819 gttataaattgtatatagtcataaatgactca--gtttaaagtccacataatacttatacataaatgactaaa 7815749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 230 - 286
Target Start/End: Original strand, 23064797 - 23064853
Alignment:
Q  230 aaaatcacaatcaaaattgaagaattttactcaattagttttgtagagtcgatatag 286  Q
    |||||| ||||||||||||||| |||||| ||||  | ||||||||| |||||||||    
T  23064797 aaaatcgcaatcaaaattgaaggattttattcaaggacttttgtagaatcgatatag 23064853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 300 - 352
Target Start/End: Complemental strand, 27528007 - 27527955
Alignment:
Q  300 atggattccaccaaaacaaaaataatgttaaatatatgttataaattgcatat 352  Q
    |||||||| ||||||  |||||||||| ||| |||||||| ||||||||||||    
T  27528007 atggattctaccaaataaaaaataatgctaactatatgttgtaaattgcatat 27527955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 5e-27; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 309 - 458
Target Start/End: Original strand, 187813 - 187961
Alignment:
Q  309 accaaaacaaaaataatgttaaatatatgttataaattgcatatggttatgaataactcaaagtttaaagtccacaaaattcttatacataaataactaa 408  Q
    |||||||||||||||||||||||||||||||||||||||||||| || || ||||||| ||||||  |||||||||||||   ||||||||||| ||| |    
T  187813 accaaaacaaaaataatgttaaatatatgttataaattgcatatagtaataaataact-aaagttcgaagtccacaaaatatatatacataaatgactca 187911  T
Q  409 aatcttagataccagatattttttattagtca-taataatactaaacaacc 458  Q
    || | |||||  || |||||||||| |||||| ||||||| ||||||||||    
T  187912 aagcctagat-gcaaatattttttagtagtcagtaataatgctaaacaacc 187961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 290 - 448
Target Start/End: Complemental strand, 41427625 - 41427469
Alignment:
Q  290 atcaaaatcgatggattccaccaaaacaaaaataatgttaaatatatgttataaattgcatatggttatgaataactcaaagtttaaagtccacaaaatt 389  Q
    ||||||||||| |||||| |||||||||||||||||| ||||||||| ||||||||||||||| || || ||| ||| |||||| ||||||||||||||     
T  41427625 atcaaaatcga-ggattctaccaaaacaaaaataatgataaatatatattataaattgcatatagtcataaatgacttaaagttcaaagtccacaaaata 41427527  T
Q  390 cttatacataaataactaaaatcttagataccagatattttttattagtcataataata 448  Q
    | ||||||||||| ||| ||| | |||||  || ||||| |||| | ||||||||||||    
T  41427526 catatacataaatgactcaaagcctagat-gcaaatattctttagtggtcataataata 41427469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 302 - 458
Target Start/End: Complemental strand, 19377808 - 19377653
Alignment:
Q  302 ggattccaccaaaacaaaaataatgttaaatatatgttataaattgcatatggttatgaataactcaaagtttaaagtccacaaaattcttatacataaa 401  Q
    |||||| || |||||||||||||||||||||||||||||||||||| |||| || || ||| ||| |||||| |||||||||||||| | ||||||||||    
T  19377808 ggattctacaaaaacaaaaataatgttaaatatatgttataaattggatatagtcataaatgacttaaagttcaaagtccacaaaatacatatacataaa 19377709  T
Q  402 taactaaaatcttagataccagatattttttattagtcataataatactaaacaacc 458  Q
    | ||| |||   |||||  || ||||| |||| |||||||||||||  |||||||||    
T  19377708 tgactcaaaggctagat-gcaaatattctttagtagtcataataatgttaaacaacc 19377653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 290 - 411
Target Start/End: Complemental strand, 24648236 - 24648117
Alignment:
Q  290 atcaaaatcgatggattccaccaaaacaaaaataatgttaaatatatgttataaattgcatatggttatgaataactcaaagtttaaagtccacaaaatt 389  Q
    |||||||||| ||||||  || |||||| |||||||| ||||||||| |||||||||| |||| || || ||| ||||||  |||||||||||||||||     
T  24648236 atcaaaatcggtggattttactaaaacataaataatgctaaatatatattataaattgtatatagtcataaatgactcaa--tttaaagtccacaaaata 24648139  T
Q  390 cttatacataaataactaaaat 411  Q
    ||||||||||||| ||||||||    
T  24648138 cttatacataaatgactaaaat 24648117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 290 - 458
Target Start/End: Complemental strand, 15446418 - 15446250
Alignment:
Q  290 atcaaaatcgatggattccaccaaaacaaaaataatgttaaatatatgttataaattgcatatggttatgaataactcaaagtttaaagtccacaaaatt 389  Q
    |||||||||||||||||| | |||||||||||||| | |||||||||||||| ||||||| |   | || ||| ||||||||||||||||||||||| |     
T  15446418 atcaaaatcgatggattctatcaaaacaaaaataacgataaatatatgttatcaattgcacacactcataaatgactcaaagtttaaagtccacaaatta 15446319  T
Q  390 cttatacataaataact-aaaatcttagataccagatattttttattagtcataataatactaaacaacc 458  Q
    ||| ||||||||| ||| || |||  |||| ||| ||||| |||  |||||||||||||  |||||||||    
T  15446318 cttgtacataaatgactcaagatc-gagatgccaaatattctttcgtagtcataataatgttaaacaacc 15446250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 290 - 352
Target Start/End: Original strand, 15052014 - 15052075
Alignment:
Q  290 atcaaaatcgatggattccaccaaaacaaaaataatgttaaatatatgttataaattgcatat 352  Q
    ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  15052014 atcaaaatcga-ggattctaccaaaacaaaaataatgttaaatatatgttataaattgcatat 15052075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 290 - 402
Target Start/End: Original strand, 22984724 - 22984835
Alignment:
Q  290 atcaaaatcgatggattccaccaaaacaaaaataatgttaaatatatgttataaattgcatatggttatgaataactcaaagtttaaagtccacaaaatt 389  Q
    ||||||||||| |||||| ||||| |  ||||||||| ||||||||||||||||||||||||| || ||  || |||||||||| ||| ||||||||||     
T  22984724 atcaaaatcga-ggattctaccaatagtaaaataatgctaaatatatgttataaattgcatatagtcatagatgactcaaagttcaaattccacaaaata 22984822  T
Q  390 cttatacataaat 402  Q
    | |||||||||||    
T  22984823 catatacataaat 22984835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 290 - 348
Target Start/End: Original strand, 9996893 - 9996951
Alignment:
Q  290 atcaaaatcgatggattccaccaaaacaaaaataatgttaaatatatgttataaattgc 348  Q
    |||||||||||||||||  |||||||||||||||||| | |||||||||||||||||||    
T  9996893 atcaaaatcgatggattttaccaaaacaaaaataatgcttaatatatgttataaattgc 9996951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 293 - 347
Target Start/End: Original strand, 43005772 - 43005826
Alignment:
Q  293 aaaatcgatggattccaccaaaacaaaaataatgttaaatatatgttataaattg 347  Q
    ||||||||||||||  |||||||||||||||||| ||||||||||||||||||||    
T  43005772 aaaatcgatggattgtaccaaaacaaaaataatgctaaatatatgttataaattg 43005826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 293 - 352
Target Start/End: Original strand, 13348812 - 13348872
Alignment:
Q  293 aaaatcgatggattccaccaaaacaaaaataatgtt-aaatatatgttataaattgcatat 352  Q
    ||||||||||||||| | ||||| |||||||||||| |||||||| |||||||||||||||    
T  13348812 aaaatcgatggattctatcaaaataaaaataatgttaaaatatatattataaattgcatat 13348872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 364 - 542
Target Start/End: Original strand, 13341647 - 13341826
Alignment:
Q  364 actcaaagtttaaagtccacaaaattcttatacataaataactaaaatcttagataccagatattttttattagtcataataatactaaacaacc-cnnn 462  Q
    ||||||||||| |||||| | |||| ||||||||||||| ||| |||  ||| || ||| ||||| ||||  |||||||||||| |||||| |||         
T  13341647 actcaaagtttcaagtccgctaaatacttatacataaatgactcaaagtttaaatgccaaatattctttaggagtcataataatgctaaacgacctagac 13341746  T
Q  463 nnnntacttaatgacaaatcctagatgtgtgacaaaatactttattataagtgaggaagtgact-attaagtttcaaggca 542  Q
        ||||||| | |||||||||||||  | ||||| ||||| || ||||||||| ||||||||  |||||||||||||||    
T  13341747 aaaatacttaaag-caaatcctagatgccttacaaagtacttgatcataagtgagtaagtgactctttaagtttcaaggca 13341826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 352
Target Start/End: Complemental strand, 26021521 - 26021478
Alignment:
Q  309 accaaaacaaaaataatgttaaatatatgttataaattgcatat 352  Q
    |||||||||| ||||||| |||||||||||||||||||| ||||    
T  26021521 accaaaacaataataatgctaaatatatgttataaattgtatat 26021478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 263
Target Start/End: Complemental strand, 26021622 - 26021579
Alignment:
Q  220 agcaaaatcgaaaatcacaatcaaaattgaagaattttactcaa 263  Q
    ||||||||||||||||||||||||||| | || |||||||||||    
T  26021622 agcaaaatcgaaaatcacaatcaaaatcgtaggattttactcaa 26021579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 309 - 402
Target Start/End: Complemental strand, 30804123 - 30804032
Alignment:
Q  309 accaaaacaaaaataatgttaaatatatgttataaattgcatatggttatgaataactcaaagtttaaagtccacaaaattcttatacataaat 402  Q
    |||||||||||||||||| ||||||| | |||| |||| ||||| || || ||| ||||  ||||| || || ||||||| |||||||||||||    
T  30804123 accaaaacaaaaataatgctaaatatttattatgaattacatatagtcataaatgactc--agtttcaattctacaaaatacttatacataaat 30804032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 230 - 286
Target Start/End: Original strand, 19042264 - 19042320
Alignment:
Q  230 aaaatcacaatcaaaattgaagaattttactcaattagttttgtagagtcgatatag 286  Q
    ||||||||||| ||||| ||||||||||||| ||  | ||||||||| |||||||||    
T  19042264 aaaatcacaattaaaatcgaagaattttacttaaggacttttgtagaatcgatatag 19042320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 238 - 286
Target Start/End: Original strand, 23172272 - 23172320
Alignment:
Q  238 aatcaaaattgaagaattttactcaattagttttgtagagtcgatatag 286  Q
    ||||||||| ||||||||||||||||  | ||||||||| |||||||||    
T  23172272 aatcaaaatcgaagaattttactcaaagacttttgtagaatcgatatag 23172320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 494 - 542
Target Start/End: Complemental strand, 29270144 - 29270096
Alignment:
Q  494 acaaaatactttattataagtgaggaagtgactattaagtttcaaggca 542  Q
    ||||||||||| || ||||||||| ||||| |||||| |||||||||||    
T  29270144 acaaaatacttgatcataagtgagaaagtgtctattacgtttcaaggca 29270096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 230 - 286
Target Start/End: Original strand, 43005695 - 43005751
Alignment:
Q  230 aaaatcacaatcaaaattgaagaattttactcaattagttttgtagagtcgatatag 286  Q
    |||||| ||||||||||||||  ||||||||||| |  ||||||||| |||||||||    
T  43005695 aaaatcgcaatcaaaattgaaagattttactcaacttcttttgtagaatcgatatag 43005751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1178 (Bit Score: 61; Significance: 7e-26; HSPs: 1)
Name: scaffold1178
Description:

Target: scaffold1178; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 290 - 402
Target Start/End: Complemental strand, 541 - 430
Alignment:
Q  290 atcaaaatcgatggattccaccaaaacaaaaataatgttaaatatatgttataaattgcatatggttatgaataactcaaagtttaaagtccacaaaatt 389  Q
    ||||||||||| |||||| |||||||||||||||||| |||||||||| |||||||||||||| || || ||| |||||||||| ||||| ||||||||     
T  541 atcaaaatcga-ggattctaccaaaacaaaaataatgctaaatatatgatataaattgcatatagtcataaatgactcaaagttcaaagtgcacaaaatg 443  T
Q  390 cttatacataaat 402  Q
    | |||||||||||    
T  442 catatacataaat 430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 7e-26; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 290 - 458
Target Start/End: Original strand, 1981246 - 1981411
Alignment:
Q  290 atcaaaatcgatggattccaccaaaacaaaaataatgttaaatatatgttataaattgcatatggttatgaataactcaaagtttaaagtccacaaaatt 389  Q
    ||||||||||| |||||| | |||||||||||||||| ||||||||||||||||||||||||| || || ||| ||| |||||| ||||||||||||||     
T  1981246 atcaaaatcga-ggattctatcaaaacaaaaataatgctaaatatatgttataaattgcatatagtcataaatgact-aaagttcaaagtccacaaaata 1981343  T
Q  390 cttatacataaataactaaaatcttagataccagatattttttattagtcataataatactaaacaacc 458  Q
    | ||||||||||| ||| ||| | |||||  || ||||| |||| |||||||||| || ||||| ||||    
T  1981344 catatacataaatgactcaaagcctagat-gcaaatattctttagtagtcataatgatgctaaataacc 1981411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 290 - 402
Target Start/End: Original strand, 25842654 - 25842764
Alignment:
Q  290 atcaaaatcgatggattccaccaaaacaaaaataatgttaaatatatgttataaattgcatatggttatgaataactcaaagtttaaagtccacaaaatt 389  Q
    ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| || || ||| ||| |||||| ||||||||||||||     
T  25842654 atcaaaatcga-ggattctaccaaaacaaaaataatgttaaatatatgttataaattgcatatagtcataaatgact-aaagttcaaagtccacaaaata 25842751  T
Q  390 cttatacataaat 402  Q
    | || ||||||||    
T  25842752 catacacataaat 25842764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 290 - 410
Target Start/End: Original strand, 26565458 - 26565575
Alignment:
Q  290 atcaaaatcgatggattccaccaaaacaaaaataatgttaaatatatgttataaattgcatatggttatgaataactcaaagtttaaagtccacaaaatt 389  Q
    |||||||| ||||||||  |||||||||||||||||||||| ||||||||||||| || |||| || || ||| |||||  ||||||||||||||||||     
T  26565458 atcaaaattgatggattttaccaaaacaaaaataatgttaa-tatatgttataaactgtatatagtcataaatgactca--gtttaaagtccacaaaata 26565554  T
Q  390 cttatacataaataactaaaa 410  Q
    ||||||||||||| |||||||    
T  26565555 cttatacataaatgactaaaa 26565575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 290 - 402
Target Start/End: Original strand, 23618352 - 23618462
Alignment:
Q  290 atcaaaatcgatggattccaccaaaacaaaaataatgttaaatatatgttataaattgcatatggttatgaataactcaaagtttaaagtccacaaaatt 389  Q
    ||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||| || || ||| ||| |||||| |||||| |||||||     
T  23618352 atcaaaatcga-ggattctaccaaaacaaaaataatgttaaatatatattataaattgcatatagtcataaatgact-aaagttcaaagtctacaaaata 23618449  T
Q  390 cttatacataaat 402  Q
    | |||||||||||    
T  23618450 catatacataaat 23618462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 217 - 402
Target Start/End: Original strand, 21157515 - 21157702
Alignment:
Q  217 aatagcaaaatcg-aaaatcacaatcaaaattgaagaattttactcaattagttttgtagagtcgatatagagt----atcaaaatcgatggattccacc 311  Q
    ||||||||||||| |||||| ||||||||||||||| |||||| |||| || ||||||||| || ||||||  |    | ||||||| |||||||| |||    
T  21157515 aatagcaaaatcgtaaaatctcaatcaaaattgaaggattttattcaactacttttgtagaatctatataggatggtaaacaaaatcaatggattctacc 21157614  T
Q  312 aaaacaaaaataatgttaaatatatgttataaattgcatatggttatgaataactcaaagtttaaagtccacaaaattcttatacataaat 402  Q
    ||||||||| ||||| |||||||||||||||||| | ||||  |  | ||| ||||   |||||||||| ||||||| |||||||||||||    
T  21157615 aaaacaaaagtaatgctaaatatatgttataaatggtatataatcgtaaatgactc---gtttaaagtctacaaaatacttatacataaat 21157702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 290 - 352
Target Start/End: Original strand, 8254029 - 8254090
Alignment:
Q  290 atcaaaatcgatggattccaccaaaacaaaaataatgttaaatatatgttataaattgcatat 352  Q
    ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  8254029 atcaaaatcga-ggattctaccaaaacaaaaataatgttaaatatatgttataaattgcatat 8254090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 302 - 402
Target Start/End: Original strand, 8629662 - 8629759
Alignment:
Q  302 ggattccaccaaaacaaaaataatgttaaatatatgttataaattgcatatggttatgaataactcaaagtttaaagtccacaaaattcttatacataaa 401  Q
    |||||| |||||||||||||||||| ||||||||||||||||||||||||  || || |||| || ||| || |||||||||||||| | ||||||||||    
T  8629662 ggattctaccaaaacaaaaataatgctaaatatatgttataaattgcata--gtcataaatatcttaaa-ttcaaagtccacaaaatacatatacataaa 8629758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 290 - 458
Target Start/End: Complemental strand, 8304292 - 8304125
Alignment:
Q  290 atcaaaatcgatggattccaccaaaacaaaaataatgttaaa--tatatgttataaattgcatatggttatgaataactcaaagtttaaagtccacaaaa 387  Q
    ||||||||||| |||||| ||||||||||||||||| |||||  ||||||||||||||||||||| || || |||  || |||||| |||||||| ||||    
T  8304292 atcaaaatcga-ggattctaccaaaacaaaaataattttaaaaatatatgttataaattgcatatagtcataaatgtct-aaagttcaaagtccaaaaaa 8304195  T
Q  388 ttcttatacataaataactaaaatcttagataccagatattttttattagtcataataatactaaacaacc 458  Q
    | | |||| |||||| ||| ||| | || |||  | ||||| |||  ||||||||||||| ||||||||||    
T  8304194 tgcatatatataaatgactcaaagcctatata-gaaatattctttggtagtcataataatgctaaacaacc 8304125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 290 - 352
Target Start/End: Original strand, 17809037 - 17809099
Alignment:
Q  290 atcaaaatcgatggattccaccaaaacaaaaataatgttaaatatatgttataaattgcatat 352  Q
    ||||||||  || ||||| |||||||||||||||||| |||||||||||||||||||||||||    
T  17809037 atcaaaattcatagattctaccaaaacaaaaataatgctaaatatatgttataaattgcatat 17809099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 290 - 347
Target Start/End: Complemental strand, 30294465 - 30294408
Alignment:
Q  290 atcaaaatcgatggattccaccaaaacaaaaataatgttaaatatatgttataaattg 347  Q
    |||||| ||||||||||  ||||||||||| |||||||||||||||||||||||||||    
T  30294465 atcaaactcgatggattttaccaaaacaaagataatgttaaatatatgttataaattg 30294408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 290 - 373
Target Start/End: Complemental strand, 7307216 - 7307135
Alignment:
Q  290 atcaaaatcgatggattccaccaaaacaaaaataatgttaaatatatgttataaattgcatatggttatgaataactcaaagtt 373  Q
    ||||||||||| | |||| ||||||||||||||||||||||||||||| |||||||||||||| ||  | ||| ||||||||||    
T  7307216 atcaaaatcgaag-attctaccaaaacaaaaataatgttaaatatatg-tataaattgcatatagtcgtaaatgactcaaagtt 7307135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 230 - 285
Target Start/End: Original strand, 22687103 - 22687158
Alignment:
Q  230 aaaatcacaatcaaaattgaagaattttactcaattagttttgtagagtcgatata 285  Q
    |||||||||| ||||||||||||||||||||||| || ||||||||| ||||||||    
T  22687103 aaaatcacaaccaaaattgaagaattttactcaactacttttgtagaatcgatata 22687158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 291 - 458
Target Start/End: Complemental strand, 4574935 - 4574764
Alignment:
Q  291 tcaaaatcgatggattccaccaaaacaaaaataatgttaaatatatgttataaattgc---atat-ggttatgaataactcaaagtttaaagtccacaaa 386  Q
    ||||||||||| ||||  ||||||| |||||||||| | |||||||||||||||||||   ||||  || || |||  |||||| |||||| ||||||||    
T  4574935 tcaaaatcgatagattttaccaaaataaaaataatgcttaatatatgttataaattgcttaatatatgtgataaatggctcaaaatttaaactccacaaa 4574836  T
Q  387 attcttatacataaataactaaaatcttagataccagatattttttattagtcataataatactaaacaacc 458  Q
    || |||| || ||||| ||| ||| ||| |||  || ||||| |||| ||||| ||||||| |||| |||||    
T  4574835 atacttagacttaaatgactcaaaacttggatgtcaaatattctttagtagtcgtaataatgctaagcaacc 4574764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 228 - 282
Target Start/End: Original strand, 23618263 - 23618317
Alignment:
Q  228 cgaaaatcacaatcaaaattgaagaattttactcaattagttttgtagagtcgat 282  Q
    |||||||| |||||||||| ||||||||||||||||  | ||||||||| |||||    
T  23618263 cgaaaatcgcaatcaaaatcgaagaattttactcaaggacttttgtagaatcgat 23618317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 263
Target Start/End: Complemental strand, 11326576 - 11326543
Alignment:
Q  230 aaaatcacaatcaaaattgaagaattttactcaa 263  Q
    |||||||||||||||||||||| |||||||||||    
T  11326576 aaaatcacaatcaaaattgaagtattttactcaa 11326543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 230 - 286
Target Start/End: Complemental strand, 8304379 - 8304323
Alignment:
Q  230 aaaatcacaatcaaaattgaagaattttactcaattagttttgtagagtcgatatag 286  Q
    ||||||||||||||||| |||| |||||||||||  | ||||||||| | |||||||    
T  8304379 aaaatcacaatcaaaatcgaaggattttactcaaggacttttgtagaattgatatag 8304323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 237 - 285
Target Start/End: Original strand, 8329822 - 8329870
Alignment:
Q  237 caatcaaaattgaagaattttactcaattagttttgtagagtcgatata 285  Q
    ||||||||||||||| ||||||||||| || ||||||||| | ||||||    
T  8329822 caatcaaaattgaaggattttactcaactacttttgtagaattgatata 8329870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 223 - 283
Target Start/End: Complemental strand, 30294546 - 30294486
Alignment:
Q  223 aaaatcgaaaatcacaatcaaaattgaagaattttactcaattagttttgtagagtcgata 283  Q
    ||||||| |||||||||||||||| |||| |||||||| || || |||| |||| ||||||    
T  30294546 aaaatcgtaaatcacaatcaaaatcgaaggattttacttaactacttttatagaatcgata 30294486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 1e-21; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 302 - 399
Target Start/End: Original strand, 12002793 - 12002890
Alignment:
Q  302 ggattccaccaaaacaaaaataatgttaaatatatgttataaattgcatatggttatgaataactcaaagtttaaagtccacaaaattcttatacata 399  Q
    |||||| |||||||||||||||||| ||||||||||||||||||||||||| || || ||| ||| ||| || |||||||||||||| | ||||||||    
T  12002793 ggattctaccaaaacaaaaataatgctaaatatatgttataaattgcatatagtcataaatgacttaaaattcaaagtccacaaaatacatatacata 12002890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 290 - 402
Target Start/End: Original strand, 17197451 - 17197561
Alignment:
Q  290 atcaaaatcgatggattccaccaaaacaaaaataatgttaaatatatgttataaattgcatatggttatgaataactcaaagtttaaagtccacaaaatt 389  Q
    ||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||| || || ||| ||| |||||| |||||||  |||||     
T  17197451 atcaaaatcga-ggattctaccaaaacaaaaataatgttaaatatatgttacaaattgcatatagtcataaatgact-aaagttcaaagtccgtaaaata 17197548  T
Q  390 cttatacataaat 402  Q
    | |||||||||||    
T  17197549 catatacataaat 17197561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 310 - 542
Target Start/End: Complemental strand, 24117694 - 24117462
Alignment:
Q  310 ccaaaacaaaaataatgttaaatatatgttataaattgcatatggttatgaataactcaaagtttaaagtccacaaaattcttatacataaataactaaa 409  Q
    ||||||||||||||||| |||||||  ||| |||||||||||| || || ||| ||||||| |||||||| |||||||| | ||||||||||| ||| |     
T  24117694 ccaaaacaaaaataatgctaaatat--gttttaaattgcatatagtcataaatgactcaaaatttaaagttcacaaaatacatatacataaatgactcag 24117597  T
Q  410 atcttagataccagatattttttattagtcataataatactaaacaacccnnnnnnn-tacttaa--tgacaaatcctagatgtgtgacaaaatacttta 506  Q
    | | |||||   | ||||| |||| | |||||||||||  |||||||||         || ||||  || |||||||||||||  | ||| ||||||| |    
T  24117596 aacctagatgtgaaatattctttagttgtcataataatgataaacaacctagataaaatatttaaaatg-caaatcctagatgcctaacataatacttga 24117498  T
Q  507 ttataagtgaggaagtgactattaagtttcaaggca 542  Q
    | ||||||||||||||||||||||||||||||||||    
T  24117497 tcataagtgaggaagtgactattaagtttcaaggca 24117462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 360 - 458
Target Start/End: Original strand, 39845208 - 39845304
Alignment:
Q  360 aataactcaaagtttaaagtccacaaaattcttatacataaataactaaaatcttagataccagatattttttattagtcataataatactaaacaacc 458  Q
    ||||||||||||||||||||||||||||| |||||| |||||| |||   | | ||||| ||| ||||| |||| ||||||||||||| ||||||||||    
T  39845208 aataactcaaagtttaaagtccacaaaatacttataaataaatgact--cagcctagatgccaaatattctttagtagtcataataatgctaaacaacc 39845304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 290 - 345
Target Start/End: Complemental strand, 16434730 - 16434674
Alignment:
Q  290 atcaaaatcgatggattccaccaaaacaaaaa-taatgttaaatatatgttataaat 345  Q
    |||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||    
T  16434730 atcaaaatcgatggattctaccaaaacaaaaattaatgataaatatatgttataaat 16434674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 290 - 408
Target Start/End: Original strand, 17055829 - 17055943
Alignment:
Q  290 atcaaaatcgatggattccaccaaaacaaaaataatgttaaatatatgttataaattgcatatggttatgaataactcaaagtttaaagtccacaaaatt 389  Q
    |||||||| ||||||||  |||||||||||||||||| |||||||  | ||||||||  |||| || ||  || ||||||  |||||||||||||||||     
T  17055829 atcaaaatggatggattttaccaaaacaaaaataatgctaaatat--gctataaattatatatagtcatatatgactcaa--tttaaagtccacaaaata 17055924  T
Q  390 cttatacataaataactaa 408  Q
    ||||||||||||| |||||    
T  17055925 cttatacataaatgactaa 17055943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 332 - 458
Target Start/End: Complemental strand, 8773138 - 8773013
Alignment:
Q  332 tatatgttataaattgcatatggttatgaataactcaaagtttaaagtccacaaaattcttatacataaataactaaaatcttagataccagatattttt 431  Q
    ||||||||||||||||||||  || || ||| ||| |||||| ||||||| ||||||   ||||||||||| ||| ||| | || ||| || ||||| ||    
T  8773138 tatatgttataaattgcatagagtcataaatgacttaaagttcaaagtccgcaaaataaatatacataaatgacttaaagcctatata-caaatattctt 8773040  T
Q  432 tattagtcataataatactaaacaacc 458  Q
    || ||||||||||||| ||||||||||    
T  8773039 tagtagtcataataatgctaaacaacc 8773013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 290 - 402
Target Start/End: Original strand, 18891504 - 18891614
Alignment:
Q  290 atcaaaatcgatggattccaccaaaacaaaaataatgttaaatatatgttataaattgcatatggttatgaataactcaaagtttaaagtccacaaaatt 389  Q
    |||||||| |||| |||  |||||||| ||||||||||||||||||| |||||||||  | || || || ||| | ||  |||||||| ||||||||||     
T  18891504 atcaaaattgatgaattttaccaaaacgaaaataatgttaaatatatattataaattatagatagtcataaatgattc--agtttaaattccacaaaata 18891601  T
Q  390 cttatacataaat 402  Q
    |||||||||||||    
T  18891602 cttatacataaat 18891614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 354 - 448
Target Start/End: Complemental strand, 16434682 - 16434587
Alignment:
Q  354 gttatgaataactcaaagtttaaagtccac-aaaattcttatacataaataactaaaatcttagataccagatattttttattagtcataataata 448  Q
    ||||| ||| |||||||||||||||||||| ||||| ||||||||||||| | | ||||| |||||  || ||||| |||| ||||| ||||||||    
T  16434682 gttataaatgactcaaagtttaaagtccacaaaaatacttatacataaattattcaaatcctagatgtcaaatattctttagtagtcgtaataata 16434587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 181 - 286
Target Start/End: Original strand, 18304596 - 18304703
Alignment:
Q  181 gttgtcaaaattgggactttactttaggttgaaa-gaaatagcaaaatcg-aaaatcacaatcaaaattgaagaattttactcaattagttttgtagagt 278  Q
    ||||||||||| ||||||| |||| |||| |||| |||| |||||||||| |||||| || ||||||| |||| |||||||| ||  | ||||||||| |    
T  18304596 gttgtcaaaatcgggacttcacttcaggtcgaaaggaaaaagcaaaatcgtaaaatcgcattcaaaatcgaaggattttactaaaggacttttgtagaat 18304695  T
Q  279 cgatatag 286  Q
    ||||||||    
T  18304696 cgatatag 18304703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 313 - 409
Target Start/End: Original strand, 27917303 - 27917396
Alignment:
Q  313 aaacaaaaataatgttaaatatatgttataaattgcatatggttatgaataactcaaagtttaaagtccacaaaattcttatacataaataactaaa 409  Q
    ||||| ||||||||  |||||||| |||||||| | |||| || || |||||||||  |||||||||| ||||||| ||||||||||||| ||||||    
T  27917303 aaacataaataatgcaaaatatatattataaatcgtatatagtcataaataactca--gtttaaagtc-acaaaatacttatacataaatgactaaa 27917396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 230 - 286
Target Start/End: Original strand, 14074319 - 14074375
Alignment:
Q  230 aaaatcacaatcaaaattgaagaattttactcaattagttttgtagagtcgatatag 286  Q
    ||||||||||||||||| |||| |||||||||||  | ||||||||| |||||||||    
T  14074319 aaaatcacaatcaaaatcgaaggattttactcaaggacttttgtagaatcgatatag 14074375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 181 - 285
Target Start/End: Original strand, 41032551 - 41032664
Alignment:
Q  181 gttgtcaaaattgggactttactttaggttgaaaga-aatagcaaaatcga--------aaatcacaatcaaaattgaagaattttactcaattagtttt 271  Q
    ||||||||||| |||| ||||||| ||||||||||| || |||||||| ||        ||||| |||  ||||| |||||||||||||||| |||||||    
T  41032551 gttgtcaaaatagggattttacttcaggttgaaagagaagagcaaaattgataatcgtaaaatcgcaactaaaatcgaagaattttactcaactagtttt 41032650  T
Q  272 gtagagtcgatata 285  Q
    ||||| ||||||||    
T  41032651 gtagaatcgatata 41032664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 299 - 352
Target Start/End: Original strand, 16446676 - 16446730
Alignment:
Q  299 gatggattccaccaaaacaaaa-ataatgttaaatatatgttataaattgcatat 352  Q
    ||||||||| || ||||||||| |||||  |||||||||||||||||||||||||    
T  16446676 gatggattctacaaaaacaaaatataatactaaatatatgttataaattgcatat 16446730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 299
Target Start/End: Original strand, 12002695 - 12002764
Alignment:
Q  230 aaaatcacaatcaaaattgaagaattttactcaattagttttgtagagtcgatatagagtatcaaaatcg 299  Q
    ||||||||||| ||||| |||| ||||||||||   | ||||||||| |||||||||| || ||||||||    
T  12002695 aaaatcacaataaaaatcgaaggattttactcatagacttttgtagaatcgatatagaatagcaaaatcg 12002764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 283
Target Start/End: Original strand, 17055755 - 17055808
Alignment:
Q  230 aaaatcacaatcaaaattgaagaattttactcaattagttttgtagagtcgata 283  Q
    |||||| |||||||||| |||| ||||||||||| || ||||||||| ||||||    
T  17055755 aaaatcgcaatcaaaatcgaaggattttactcaactacttttgtagaatcgata 17055808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 285
Target Start/End: Original strand, 21242877 - 21242918
Alignment:
Q  244 aattgaagaattttactcaattagttttgtagagtcgatata 285  Q
    |||||||||||||||||||| || ||||||||| ||||||||    
T  21242877 aattgaagaattttactcaactaattttgtagaatcgatata 21242918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 293 - 333
Target Start/End: Complemental strand, 8773471 - 8773432
Alignment:
Q  293 aaaatcgatggattccaccaaaacaaaaataatgttaaata 333  Q
    |||||||| |||||| |||||||||||||||||||||||||    
T  8773471 aaaatcga-ggattctaccaaaacaaaaataatgttaaata 8773432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 230 - 286
Target Start/End: Complemental strand, 23528949 - 23528893
Alignment:
Q  230 aaaatcacaatcaaaattgaagaattttactcaattagttttgtagagtcgatatag 286  Q
    |||||| |||||||||| |||| |||||||||||  | ||||||||| |||||||||    
T  23528949 aaaatcgcaatcaaaatcgaaggattttactcaaggacttttgtagaatcgatatag 23528893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 302 - 402
Target Start/End: Original strand, 133049 - 133148
Alignment:
Q  302 ggattccaccaaaacaaaaataatgttaaatatatgttataaattgcatatggttatgaataactcaaagtttaaagtccacaaaattcttatacataaa 401  Q
    |||||| || ||||||||| ||||||||||||||||||||||||||||||| || || ||| || ||||||| |||||||||||||| | ||||||||||    
T  133049 ggattctactaaaacaaaattaatgttaaatatatgttataaattgcatatagtcataaatgac-caaagttcaaagtccacaaaatacatatacataaa 133147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 51; Significance: 7e-20; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 312 - 406
Target Start/End: Original strand, 38475 - 38569
Alignment:
Q  312 aaaacaaaaataatgttaaatatatgttataaattgcatatggttatgaataactcaaagtttaaagtccacaaaattcttatacataaataact 406  Q
    ||||||||||||||| |||||||||||||||||||| |||| || || ||  ||| |||||| |||||||||||||| | |||||||||||||||    
T  38475 aaaacaaaaataatgataaatatatgttataaattgtatatagtcataaaggacttaaagttcaaagtccacaaaatacatatacataaataact 38569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0684 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0684
Description:

Target: scaffold0684; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 290 - 402
Target Start/End: Original strand, 5135 - 5245
Alignment:
Q  290 atcaaaatcgatggattccaccaaaacaaaaataatgttaaatatatgttataaattgcatatggttatgaataactcaaagtttaaagtccacaaaatt 389  Q
    ||||||||||| |||||| ||||||  |||||||||| ||||||||||||||||||||||| | || || ||| | |||||||| ||||||||||||||     
T  5135 atcaaaatcga-ggattctaccaaatgaaaaataatgctaaatatatgttataaattgcatgtagtcataaatga-tcaaagttcaaagtccacaaaata 5232  T
Q  390 cttatacataaat 402  Q
    | | |||||||||    
T  5233 catgtacataaat 5245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0259 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 290 - 352
Target Start/End: Complemental strand, 18603 - 18541
Alignment:
Q  290 atcaaaatcgatggattccaccaaaacaaaaataatgttaaatatatgttataaattgcatat 352  Q
    |||||||| ||||||||| | |||||||||||||||  |||||||||||||||||||||||||    
T  18603 atcaaaatagatggattctatcaaaacaaaaataatactaaatatatgttataaattgcatat 18541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 290 - 352
Target Start/End: Complemental strand, 24592 - 24531
Alignment:
Q  290 atcaaaatcgatggattccaccaaaacaaaaataatgttaaatatatgttataaattgcatat 352  Q
    ||||||||||| | |||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  24592 atcaaaatcgaag-attctaccaaaaaaaaaataatgttaaatatatgttataaattgcatat 24531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0603 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 290 - 410
Target Start/End: Original strand, 8869 - 8987
Alignment:
Q  290 atcaaaatcgatggattccaccaaaacaaaaataatgttaaatatatgttataaattgcatatggttatgaataactcaaagtttaaagtccacaaaatt 389  Q
    |||||||||||||||||  ||||||||||| |||||| |||||||||||||||| ||| |||| || || ||| ||||  |||||||  |||||| |||     
T  8869 atcaaaatcgatggattttaccaaaacaaagataatgctaaatatatgttataagttgtatatagtcataaatgactc--agtttaatttccacacaata 8966  T
Q  390 cttatacataaataactaaaa 410  Q
    ||||||  ||||| |||||||    
T  8967 cttatatgtaaatgactaaaa 8987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 290 - 402
Target Start/End: Complemental strand, 142835 - 142726
Alignment:
Q  290 atcaaaatcgatggattccaccaaaacaaaaataatgttaaatatatgttataaattgcatatggttatgaataactcaaagtttaaagtccacaaaatt 389  Q
    ||||||||||| |||||| ||||||   ||||||||| ||||||||||||||||||||||||| || |  ||| | |||||||| |||||||| |||||     
T  142835 atcaaaatcga-ggattcgaccaaac--aaaataatgctaaatatatgttataaattgcatatagtcaaaaatgattcaaagttcaaagtccaaaaaata 142739  T
Q  390 cttatacataaat 402  Q
    | |||||||||||    
T  142738 catatacataaat 142726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 230 - 286
Target Start/End: Complemental strand, 142922 - 142866
Alignment:
Q  230 aaaatcacaatcaaaattgaagaattttactcaattagttttgtagagtcgatatag 286  Q
    |||||| |||| |||||||||| |||||||||||  ||||||||||| | |||||||    
T  142922 aaaatcgcaattaaaattgaaggattttactcaaggagttttgtagaatagatatag 142866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0163 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 290 - 402
Target Start/End: Complemental strand, 2983 - 2873
Alignment:
Q  290 atcaaaatcgatggattccaccaaaacaaaaataatgttaaatatatgttataaattgcatatggttatgaataactcaaagtttaaagtccacaaaatt 389  Q
    ||||||||||| |||||| ||||||  |||||||||| |||||||||||||||| |||||| | || || ||| | |||||||| |||||||| |||||     
T  2983 atcaaaatcga-ggattctaccaaatgaaaaataatgctaaatatatgttataatttgcatgtagtcataaatga-tcaaagttcaaagtccataaaata 2886  T
Q  390 cttatacataaat 402  Q
    | | |||||||||    
T  2885 catgtacataaat 2873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0150 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 230 - 285
Target Start/End: Complemental strand, 33231 - 33176
Alignment:
Q  230 aaaatcacaatcaaaattgaagaattttactcaattagttttgtagagtcgatata 285  Q
    |||||| |||||||||| ||||||||||||||| ||| ||||||||| ||||||||    
T  33231 aaaatcgcaatcaaaatcgaagaattttactcacttacttttgtagaatcgatata 33176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 230 - 285
Target Start/End: Original strand, 61150 - 61205
Alignment:
Q  230 aaaatcacaatcaaaattgaagaattttactcaattagttttgtagagtcgatata 285  Q
    ||||||||||||||||| ||||||||||||| || || ||||||||| ||||||||    
T  61150 aaaatcacaatcaaaatcgaagaattttacttaactacttttgtagaatcgatata 61205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 290 - 338
Target Start/End: Original strand, 48572 - 48620
Alignment:
Q  290 atcaaaatcgatggattccaccaaaacaaaaataatgttaaatatatgt 338  Q
    ||||||||||||||| |  | | ||||||||||||||||||||||||||    
T  48572 atcaaaatcgatggactttatccaaacaaaaataatgttaaatatatgt 48620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 230 - 286
Target Start/End: Complemental strand, 8734 - 8678
Alignment:
Q  230 aaaatcacaatcaaaattgaagaattttactcaattagttttgtagagtcgatatag 286  Q
    |||||| ||||||||||||||| ||||||||||| || ||| ||||| |||||||||    
T  8734 aaaatcgcaatcaaaattgaaggattttactcaagtattttcgtagaatcgatatag 8678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 312 - 352
Target Start/End: Original strand, 76257 - 76297
Alignment:
Q  312 aaaacaaaaataatgttaaatatatgttataaattgcatat 352  Q
    ||||||||||||||| |||||||||||||||||||| ||||    
T  76257 aaaacaaaaataatgataaatatatgttataaattgtatat 76297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0526 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0526
Description:

Target: scaffold0526; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 290 - 352
Target Start/End: Complemental strand, 8362 - 8302
Alignment:
Q  290 atcaaaatcgatggattccaccaaaacaaaaataatgttaaatatatgttataaattgcatat 352  Q
    ||||||||||| |||||| ||||||||||| |||||  |||||||||| ||||||||||||||    
T  8362 atcaaaatcga-ggattctaccaaaacaaatataatactaaatatatg-tataaattgcatat 8302  T

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Target: scaffold0016 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 286
Target Start/End: Original strand, 56203 - 56317
Alignment:
Q  181 gttgtcaaaattgggactttactttaggttgaaaga-aatagcaaaatcga--------aaatcacaatcaaaattgaagaattttactcaattagtttt 271  Q
    ||||||||||| | |||||||||| |||| |||||  ||||||||||||||        ||||| |||||||||| |||| |||||||||||  | ||||    
T  56203 gttgtcaaaatcgagactttacttcaggtcgaaagggaatagcaaaatcgagacatctaaaatcgcaatcaaaatcgaaggattttactcaaggactttt 56302  T
Q  272 gtagagtcgatatag 286  Q
    ||||| |||||||||    
T  56303 gtagaatcgatatag 56317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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