View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2212_low_14 (Length: 238)
Name: NF2212_low_14
Description: NF2212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2212_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 48877137 - 48877356
Alignment:
| Q |
1 |
cactatttgaagcttattcaaaccagttcagtccttatttcttctacctcagaaaaattcggacaattcaagtggagtatactgatgcattagagtttat |
100 |
Q |
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| T |
48877137 |
cactatttgaagcttattcaaaccagttcagtccttatttcttctacctcagaaaaattcggacaattcaagtggagtatactgatgcattagagtttat |
48877236 |
T |
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| Q |
101 |
cctgcaggctgctcgtaaaactctagtgcaactcagggttttcgaattcaatgtaacaagtagactatcatagtgtgtttgcggttggcagaaataccgg |
200 |
Q |
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| T |
48877237 |
cctgcaggctgctcgtaaaactctagtgcaactcagggttttcgaattcaatgtaacaagtagactatcatagtgtgtttgcggttggcagaaataccgg |
48877336 |
T |
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| Q |
201 |
aactggaactgtctttatgc |
220 |
Q |
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|||||||| ||||||||||| |
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| T |
48877337 |
aactggaattgtctttatgc |
48877356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 40 - 161
Target Start/End: Complemental strand, 8380756 - 8380634
Alignment:
| Q |
40 |
tcttctacctcagaaaaattcggacaattcaagtggagtatactgatgcattagagtttatcctgcaggctgctcgtaaaactctag-tgcaactcaggg |
138 |
Q |
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| T |
8380756 |
tcttctacctcgggaaaattcggaccattcagttggagtataccgatgcaaaagagtctctcctgcaggctgctcgtaaagcaccagttgcagcacaggg |
8380657 |
T |
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| Q |
139 |
ttttcgaattcaatgtaacaagt |
161 |
Q |
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| T |
8380656 |
gtttcggattcagtgtaacaagt |
8380634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 35 - 198
Target Start/End: Complemental strand, 53456132 - 53455968
Alignment:
| Q |
35 |
ttatttcttctacctcagaaaaattcggacaattcaagtggagtatactgatgcattagagtttatcctgcaggctgctcgtaaaactctag-tgcaact |
133 |
Q |
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| T |
53456132 |
ttatctcttctacctcgggaaaatccggactattcaattggagtatacagatgcaaaagagtctctcctgcaagctgctcgtaaagctccagttgcagct |
53456033 |
T |
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| Q |
134 |
cagggttttcgaattcaatgtaacaagtagactatcatagtgtgtttgcggttggcagaaatacc |
198 |
Q |
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| T |
53456032 |
cggggttttcgaattcaatgtaacaagtgggctatcatagtgcgtttactgttgggagagatacc |
53455968 |
T |
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