View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2212_low_15 (Length: 237)
Name: NF2212_low_15
Description: NF2212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2212_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 129; Significance: 7e-67; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 33 - 161
Target Start/End: Original strand, 39228229 - 39228357
Alignment:
| Q |
33 |
caaagggacatgtagttagagatattccaactttttaaagaagttttggattcaaaatcctgtttgagagaaactaagatagaagcttgtgttttcaaag |
132 |
Q |
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| T |
39228229 |
caaagggacatgtagttagagatattccaactttttaaagaagttttggattcaaaatcctgtttgagagaaactaagatagaagcttgtgttttcaaag |
39228328 |
T |
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| Q |
133 |
acataggaagtgatgatgatgaagaaaca |
161 |
Q |
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| T |
39228329 |
acataggaagtgatgatgatgaagaaaca |
39228357 |
T |
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Target: chr5; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 33 - 158
Target Start/End: Original strand, 25547428 - 25547553
Alignment:
| Q |
33 |
caaagggacatgtagttagagatattccaactttttaaagaagttttggattcaaaatcctgtttgagagaaactaagatagaagcttgtgttttcaaag |
132 |
Q |
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||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25547428 |
caaagggacatgtagttggagatattccaactctttaaagaagttttggattcaaaatcctgtttgagagaaactaagatagaagcttgtgttttcaaag |
25547527 |
T |
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| Q |
133 |
acataggaagtgatgatgatgaagaa |
158 |
Q |
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|||||||||||||||||||||||||| |
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| T |
25547528 |
acataggaagtgatgatgatgaagaa |
25547553 |
T |
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