View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2212_low_20 (Length: 217)
Name: NF2212_low_20
Description: NF2212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2212_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 17 - 206
Target Start/End: Complemental strand, 46464638 - 46464449
Alignment:
| Q |
17 |
cagtgacacaagtagaagaaacaaaaatcctagtccgaatgctaccaatcatattaagcacaatatttatgaacacatgtttagcacagcttcaaacttt |
116 |
Q |
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| T |
46464638 |
cagtgacacaagtagaagaaacaaaaatcctagtccgaatgctaccaatcatattaagcacaatatttatgaacacatgtttagcacagcttcaaacttt |
46464539 |
T |
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| Q |
117 |
cagcatacaacaaagcacaaccttggacacaaacatcttgggattcaaaatgccaggaccctccctcccagtaatccctctattgttcat |
206 |
Q |
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| T |
46464538 |
cagcatacaacaaagcacaaccttggacacaaacatcttgggattcaaaatgccaggaccctccctcccagtaatccctctattgttcat |
46464449 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 113
Target Start/End: Complemental strand, 37982473 - 37982445
Alignment:
| Q |
85 |
atgaacacatgtttagcacagcttcaaac |
113 |
Q |
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| T |
37982473 |
atgaacacatgtttagcacagcttcaaac |
37982445 |
T |
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