View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2213_low_1 (Length: 257)

Name: NF2213_low_1
Description: NF2213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2213_low_1
NF2213_low_1
[»] chr7 (5 HSPs)
chr7 (5-238)||(14653037-14653270)
chr7 (5-238)||(14661472-14661705)
chr7 (6-179)||(14757772-14757945)
chr7 (35-201)||(14749831-14749997)
chr7 (33-149)||(14764962-14765078)
[»] chr5 (5 HSPs)
chr5 (5-238)||(17690482-17690715)
chr5 (5-238)||(17683556-17683789)
chr5 (6-179)||(17570590-17570763)
chr5 (35-176)||(17621824-17621965)
chr5 (33-149)||(17563521-17563637)
[»] chr8 (1 HSPs)
chr8 (5-157)||(24395374-24395526)
[»] chr1 (4 HSPs)
chr1 (33-157)||(15196051-15196175)
chr1 (33-157)||(15216469-15216593)
chr1 (33-157)||(15195400-15195524)
chr1 (33-157)||(15215818-15215942)


Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 5 - 238
Target Start/End: Original strand, 14653037 - 14653270
Alignment:
Q  5 gactgaaaagaaaattattaatgcgatcgagaaggagatgattgaaaatcccatgccgagattaatcaatatggagaactcttggtttgtaaacatgctt 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  14653037 gactgaaaagaaaattattaatgcgatcgagaaggagatgattgaaaatcccatgctgagattaatcaatatggagaactctgggtttgtaaacatgctt 14653136  T
Q  105 tgtggtactaaatatgaagatttggaaagaatgtataacttgttccgacgtgttcctaatggtctctcaaaaataaaagaagtgatgatctcacacattc 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14653137 tgtggtactaaatatgaagatttggaaagaatgtataacttgttccgacgtgttcctaatggtctctcaaaaataaaagaagtgatgatctcacacattc 14653236  T
Q  205 gagtgtccgttaacaagcttgttactgatccaaa 238  Q
    ||||||| ||||||||||||||||||||||||||    
T  14653237 gagtgtctgttaacaagcttgttactgatccaaa 14653270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 5 - 238
Target Start/End: Original strand, 14661472 - 14661705
Alignment:
Q  5 gactgaaaagaaaattattaatgcgatcgagaaggagatgattgaaaatcccatgccgagattaatcaatatggagaactcttggtttgtaaacatgctt 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  14661472 gactgaaaagaaaattattaatgcgatcgagaaggagatgattgaaaatcccatgctgagattaatcaatatggagaactctgggtttgtaaacatgctt 14661571  T
Q  105 tgtggtactaaatatgaagatttggaaagaatgtataacttgttccgacgtgttcctaatggtctctcaaaaataaaagaagtgatgatctcacacattc 204  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||| |||||| |||||||||||||||||    
T  14661572 tgtggtaataaatatgaagatttggaaagaatgtataacttgttccgtcgtgttcctgatggtctcttaaaaatacaagaagcgatgatctcacacattc 14661671  T
Q  205 gagtgtccgttaacaagcttgttactgatccaaa 238  Q
    ||||||||||| ||||||||||||||||||||||    
T  14661672 gagtgtccgttgacaagcttgttactgatccaaa 14661705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 6 - 179
Target Start/End: Complemental strand, 14757945 - 14757772
Alignment:
Q  6 actgaaaagaaaattattaatgcgatcgagaaggagatgattgaaaatcccatgccgagattaatcaatatggagaactcttggtttgtaaacatgcttt 105  Q
    ||||||||||| |||| || || |||||||||||||||||||||||||| |||||  ||||||||| |||||||||||||  |||| |||||||||||||    
T  14757945 actgaaaagaagattactagtgtgatcgagaaggagatgattgaaaatcacatgcttagattaatccatatggagaactcggggttagtaaacatgcttt 14757846  T
Q  106 gtggtactaaatatgaagatttggaaagaatgtataacttgttccgacgtgttcctaatggtctctcaaaaata 179  Q
    |||||  ||||||||||||||||| |||||||||||||||||| || |||||| ||||||||||||| ||||||    
T  14757845 gtggtgataaatatgaagatttgggaagaatgtataacttgtttcgtcgtgttactaatggtctctcgaaaata 14757772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 35 - 201
Target Start/End: Complemental strand, 14749997 - 14749831
Alignment:
Q  35 gaaggagatgattgaaaatcccatgccgagattaatcaatatggagaactcttggtttgtaaacatgctttgtggtactaaatatgaagatttggaaaga 134  Q
    ||||||||  |||||||||| |||||  ||||||||| |  || |||| ||| |||| ||||||||||||||||||  ||||||| | |||||||  |||    
T  14749997 gaaggagactattgaaaatcacatgcttagattaatccaattgcagaattctgggttagtaaacatgctttgtggtgataaatataacgatttgggtaga 14749898  T
Q  135 atgtataacttgttccgacgtgttcctaatggtctctcaaaaataaaagaagtgatgatctcacaca 201  Q
    ||||||||||||||||  ||||||||| |||||||||  ||||||   ||||||||||  |||||||    
T  14749897 atgtataacttgttccatcgtgttcctgatggtctcttgaaaatacgtgaagtgatgacttcacaca 14749831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 33 - 149
Target Start/End: Complemental strand, 14765078 - 14764962
Alignment:
Q  33 gagaaggagatgattgaaaatcccatgccgagattaatcaatatggagaactcttggtttgtaaacatgctttgtggtactaaatatgaagatttggaaa 132  Q
    |||||||||||| | ||||||| |||||  ||||||||| ||| |||||  ||| |||| |||||||||||| ||| |  |||||||||||||||||  |    
T  14765078 gagaaggagatgctcgaaaatcacatgcttagattaatctataaggagacttctgggttagtaaacatgcttggtgatgataaatatgaagatttgggta 14764979  T
Q  133 gaatgtataacttgttc 149  Q
    | |||||||||||||||    
T  14764978 ggatgtataacttgttc 14764962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 5 - 238
Target Start/End: Complemental strand, 17690715 - 17690482
Alignment:
Q  5 gactgaaaagaaaattattaatgcgatcgagaaggagatgattgaaaatcccatgccgagattaatcaatatggagaactcttggtttgtaaacatgctt 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||    
T  17690715 gactgaaaagaaaattattaatgcgatcgagaaggagatgattgaaaatcccatgcctagattaatcaatatggagaactctgggtttgtaaacatgatt 17690616  T
Q  105 tgtggtactaaatatgaagatttggaaagaatgtataacttgttccgacgtgttcctaatggtctctcaaaaataaaagaagtgatgatctcacacattc 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  17690615 tgtggtactaaatatgaagatttggaaagaatgtataacttgttccgacgtgttcctaatggtctctcaaaaataaaagacgtgatgatctcacacattc 17690516  T
Q  205 gagtgtccgttaacaagcttgttactgatccaaa 238  Q
    |||||||||||||||||||||||| |||||||||    
T  17690515 gagtgtccgttaacaagcttgttattgatccaaa 17690482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 5 - 238
Target Start/End: Complemental strand, 17683789 - 17683556
Alignment:
Q  5 gactgaaaagaaaattattaatgcgatcgagaaggagatgattgaaaatcccatgccgagattaatcaatatggagaactcttggtttgtaaacatgctt 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  17683789 gactgaaaagaaaattattaatgcgatcgagaaggagatgattgaaaatcccatgctgagattaatcaatatggagaactctgggtttgtaaacatgctt 17683690  T
Q  105 tgtggtactaaatatgaagatttggaaagaatgtataacttgttccgacgtgttcctaatggtctctcaaaaataaaagaagtgatgatctcacacattc 204  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||| |||||| |||||||||||||||||    
T  17683689 tgtggtaataaatatgaagatttggaaagaatgtataacttgttccgtcgggttcctgatggtctctcaaaaatacaagaagcgatgatctcacacattc 17683590  T
Q  205 gagtgtccgttaacaagcttgttactgatccaaa 238  Q
    ||||||||||| ||||||||||||||||||||||    
T  17683589 gagtgtccgttgacaagcttgttactgatccaaa 17683556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 6 - 179
Target Start/End: Original strand, 17570590 - 17570763
Alignment:
Q  6 actgaaaagaaaattattaatgcgatcgagaaggagatgattgaaaatcccatgccgagattaatcaatatggagaactcttggtttgtaaacatgcttt 105  Q
    ||||||||||| |||| || || |||||||||||||||||||||||||| |||||  ||||||||| |||||||||||||  |||| |||||||||||||    
T  17570590 actgaaaagaagattactagtgtgatcgagaaggagatgattgaaaatcacatgcttagattaatccatatggagaactcggggttagtaaacatgcttt 17570689  T
Q  106 gtggtactaaatatgaagatttggaaagaatgtataacttgttccgacgtgttcctaatggtctctcaaaaata 179  Q
    |||||  ||||||||||||||||| |||||||||||||||||| || |||||| ||||||||||||| ||||||    
T  17570690 gtggtgataaatatgaagatttgggaagaatgtataacttgtttcgtcgtgttactaatggtctctcgaaaata 17570763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 35 - 176
Target Start/End: Complemental strand, 17621965 - 17621824
Alignment:
Q  35 gaaggagatgattgaaaatcccatgccgagattaatcaatatggagaactcttggtttgtaaacatgctttgtggtactaaatatgaagatttggaaaga 134  Q
    ||||||||| |||||||||  |||||  ||||||||| ||||||| || ||| |||| ||||||||| ||||||||  |||||||||||| ||||  |||    
T  17621965 gaaggagattattgaaaatgacatgcttagattaatccatatggaaaattctgggttagtaaacatgatttgtggtgataaatatgaagacttgggtaga 17621866  T
Q  135 atgtataacttgttccgacgtgttcctaatggtctctcaaaa 176  Q
    ||||||||||||||||| ||||||||| ||| ||||| ||||    
T  17621865 atgtataacttgttccgtcgtgttcctgatgttctctaaaaa 17621824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 33 - 149
Target Start/End: Original strand, 17563521 - 17563637
Alignment:
Q  33 gagaaggagatgattgaaaatcccatgccgagattaatcaatatggagaactcttggtttgtaaacatgctttgtggtactaaatatgaagatttggaaa 132  Q
    |||||||||||| | ||||||| |||||  ||||||||| ||| |||||  ||| |||| |||||||||||| ||| |  |||||||||||||||||  |    
T  17563521 gagaaggagatgctcgaaaatcacatgcttagattaatctataaggagacttctgggttagtaaacatgcttggtgatgataaatatgaagatttgggta 17563620  T
Q  133 gaatgtataacttgttc 149  Q
    | |||||||||||||||    
T  17563621 ggatgtataacttgttc 17563637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 5 - 157
Target Start/End: Complemental strand, 24395526 - 24395374
Alignment:
Q  5 gactgaaaagaaaattattaatgcgatcgagaaggagatgattgaaaatcccatgccgagattaatcaatatggagaactcttggtttgtaaacatgctt 104  Q
    |||||||||||| |||| ||| | | | |||| | ||||||||||||||| |||||  || |||||| |||||||||| ||| | || || |||||||||    
T  24395526 gactgaaaagaagattaataaagtggtggagacgcagatgattgaaaatcacatgctcaggttaatccatatggagaattctggtttagtcaacatgctt 24395427  T
Q  105 tgtggtactaaatatgaagatttggaaagaatgtataacttgttccgacgtgt 157  Q
    |||| |  |||||||||||||||||  || ||||||||||||||||| |||||    
T  24395426 tgtgatgataaatatgaagatttgggtaggatgtataacttgttccgccgtgt 24395374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 33 - 157
Target Start/End: Complemental strand, 15196175 - 15196051
Alignment:
Q  33 gagaaggagatgattgaaaatcccatgccgagattaatcaatatggagaactcttggtttgtaaacatgctttgtggtactaaatatgaagatttggaaa 132  Q
    |||||||||||||| ||||||| |||||  ||||||||| |||||||||||||| |||| ||||||||| || ||| |  ||| ||| ||||||||   |    
T  15196175 gagaaggagatgatcgaaaatcacatgcttagattaatccatatggagaactctgggttagtaaacatgattggtgatgataagtataaagatttgatta 15196076  T
Q  133 gaatgtataacttgttccgacgtgt 157  Q
    ||||||||||||||||||| |||||    
T  15196075 gaatgtataacttgttccgtcgtgt 15196051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 33 - 157
Target Start/End: Complemental strand, 15216593 - 15216469
Alignment:
Q  33 gagaaggagatgattgaaaatcccatgccgagattaatcaatatggagaactcttggtttgtaaacatgctttgtggtactaaatatgaagatttggaaa 132  Q
    |||||||||||||| ||||||| |||||  ||||||||| |||||||||||||| |||| ||||||||| || ||| |  ||| ||| ||||||||   |    
T  15216593 gagaaggagatgatcgaaaatcacatgcttagattaatccatatggagaactctgggttagtaaacatgattggtgatgataagtataaagatttgatta 15216494  T
Q  133 gaatgtataacttgttccgacgtgt 157  Q
    ||||||||||||||||||| |||||    
T  15216493 gaatgtataacttgttccgtcgtgt 15216469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 33 - 157
Target Start/End: Complemental strand, 15195524 - 15195400
Alignment:
Q  33 gagaaggagatgattgaaaatcccatgccgagattaatcaatatggagaactcttggtttgtaaacatgctttgtggtactaaatatgaagatttggaaa 132  Q
    |||||||||||||| ||||||| ||||   |||||||||  ||||||||||||| |||| ||||||||| || ||| |  ||| ||||||||||||   |    
T  15195524 gagaaggagatgatcgaaaatcacatgattagattaatccttatggagaactctgggttagtaaacatgattggtgatgataagtatgaagatttgagta 15195425  T
Q  133 gaatgtataacttgttccgacgtgt 157  Q
    ||||||||||||||||||| |||||    
T  15195424 gaatgtataacttgttccgtcgtgt 15195400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 33 - 157
Target Start/End: Complemental strand, 15215942 - 15215818
Alignment:
Q  33 gagaaggagatgattgaaaatcccatgccgagattaatcaatatggagaactcttggtttgtaaacatgctttgtggtactaaatatgaagatttggaaa 132  Q
    |||||||||||||| ||||||| ||||   |||||||||  ||||||||||||| |||| ||||||||| || ||| |  ||| ||||||||||||   |    
T  15215942 gagaaggagatgatcgaaaatcacatgattagattaatccttatggagaactctgggttagtaaacatgattggtgatgataagtatgaagatttgagta 15215843  T
Q  133 gaatgtataacttgttccgacgtgt 157  Q
    ||||||||||||||||||| |||||    
T  15215842 gaatgtataacttgttccgtcgtgt 15215818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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