View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2213_low_4 (Length: 207)
Name: NF2213_low_4
Description: NF2213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2213_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 154; Significance: 7e-82; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 19 - 188
Target Start/End: Original strand, 11825466 - 11825635
Alignment:
| Q |
19 |
gttctggaaccattccgttgacttagactcgcaatttagcttattccgcaaaatacgtgccaaaacccgtaagcatttttccagcagaaaacccaacttc |
118 |
Q |
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| T |
11825466 |
gttctggaaccattccgttgacttagactcgcaatttaacttattccgcaaaatacgcgccaaaacccgtaagcatttttccagcagaaaacccaacttc |
11825565 |
T |
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| Q |
119 |
aaaaccactttctgagttcgtttctagtccgaatcacacaaaacttatattcgaattgaagggaattaag |
188 |
Q |
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| T |
11825566 |
aaaagcactttccgagttcgtttctagtccgaatcacacaaaacttatattcgaattgaagggaattaag |
11825635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 187
Target Start/End: Complemental strand, 10214749 - 10214699
Alignment:
| Q |
137 |
cgtttctagtccgaatcacacaaaacttatattcgaattgaagggaattaa |
187 |
Q |
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| T |
10214749 |
cgtttctaatccgaatcatacgaaatttatatccgaattgaagggaattaa |
10214699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 79 - 108
Target Start/End: Complemental strand, 14175640 - 14175611
Alignment:
| Q |
79 |
caaaacccgtaagcatttttccagcagaaa |
108 |
Q |
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| T |
14175640 |
caaaacccgtaagcatttttccagcagaaa |
14175611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 127 - 185
Target Start/End: Complemental strand, 17302930 - 17302872
Alignment:
| Q |
127 |
tttctgagttcgtttctagtccgaatcacacaaaacttatattcgaattgaagggaatt |
185 |
Q |
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| T |
17302930 |
tttctgaattcatttctaatccgaatcatacaaaatttatatccgaattgaagggaatt |
17302872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 1456171 - 1456217
Alignment:
| Q |
139 |
tttctagtccgaatcacacaaaacttatattcgaattgaagggaatt |
185 |
Q |
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| T |
1456171 |
tttctattccgaatcacacaaatcttaaatccgaattgaagggaatt |
1456217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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