View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2214_low_2 (Length: 385)
Name: NF2214_low_2
Description: NF2214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2214_low_2 |
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| [»] scaffold0617 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 379
Target Start/End: Complemental strand, 11849971 - 11849593
Alignment:
| Q |
1 |
caaccatcatcattgcattcaaattatcttcatcagataagccttcaccagtttcataatctgccatccatgaaggtgtttttcttaccctcccttcaac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11849971 |
caaccatcatcattgcattcaaattatcttcatcagataagccttcaccagtttcataatctgccatccatgaaggtgtttttcttaccctcccttcaac |
11849872 |
T |
|
| Q |
101 |
gacattgggtgagtcatcctaatgagattcactagacgatgaattagattcatcattgttattgttattatcattgctagcatcattgttgcctccttct |
200 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11849871 |
gacattgggtgagtcatcctcatgagattcactagacgatgaattagattcatcattgttattgttattatcattgctagcatcattgttgcctccttct |
11849772 |
T |
|
| Q |
201 |
tcatttccctctactccttcaatgtcaatctcataatcatttttccactctaaaagatctggcctacattcatctttttggttgtcccagttccaacata |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |
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| T |
11849771 |
tcatttccctctactccttcaatgtcaatctcataatcatttttccactctaaaagatctggcctgcattcatctttttggttgttccagttccaacata |
11849672 |
T |
|
| Q |
301 |
catcttcttcaaaaatcacatccttattaatgattactttcttggaaactggatcatatagtttgtaggcctttgattc |
379 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11849671 |
catcttcttcaaaaatcacatccttactaatgattactttcttggaaactggatcatatagtttgtaggcctttgattc |
11849593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 379
Target Start/End: Complemental strand, 5876631 - 5876267
Alignment:
| Q |
1 |
caaccatcatcattgcattcaaattatcttcatcagataagccttcaccagtttcataatctgccatccatgaaggtgtttttcttaccctcccttcaac |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |
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| T |
5876631 |
caaccatcatcattgcattcaaattatcttcatcagataagccttcaccagtttcataatatgccatccatgaaggtttttttcttaccctcccttcaac |
5876532 |
T |
|
| Q |
101 |
gacattgggtgagtcatcctaatgagattcactagacgatgaattagattcatcattgttattgttattatcattgctagcatcattgttgcctccttct |
200 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5876531 |
gacattgggtgagtcatcctcatgagattcactagacgatgaattagattcatcattgttattgttattatcattgctagcatcattgttgcctccttct |
5876432 |
T |
|
| Q |
201 |
tcatttccctctactccttcaatgtcaatctcataatcatttttccactctaaaagatctggcctacattcatctttttggttgtcccagttccaacata |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |
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| T |
5876431 |
tcatttccctctactccttcaatgtcaatctcataatcatttttcca--------------gcctgcattcatctttttggttgtcccagttccaacata |
5876346 |
T |
|
| Q |
301 |
catcttcttcaaaaatcacatccttattaatgattactttcttggaaactggatcatatagtttgtaggcctttgattc |
379 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5876345 |
catcttcttcaaaaatcacatccttactaatgattactttcttggaaactggatcatatagtttgtaggcctttgattc |
5876267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 7e-25; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 217 - 379
Target Start/End: Complemental strand, 26554328 - 26554166
Alignment:
| Q |
217 |
cttcaatgtcaatctcataatcatttttccactctaaaagatctggcctacattcatctttttggttgtcccagttccaacatacatcttcttcaaaaat |
316 |
Q |
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||||||||||| |||| |||||||||| ||||||||| ||| | |||||||| ||||| ||||||| ||||| ||| |||||||||||||||| |
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| T |
26554328 |
cttcaatgtcattctcggaatcatttttgaactctaaaacatccagactacattcctctttgcttctgtcccaattccagcattcatcttcttcaaaaat |
26554229 |
T |
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| Q |
317 |
cacatccttattaatgattactttcttggaaactggatcatatagtttgtaggcctttgattc |
379 |
Q |
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|||||| || ||||||||| ||||||||||| ||||||||||| |||||||||||||||| |
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| T |
26554228 |
cacatctttgctaatgattattttcttggaaattggatcatataacctgtaggcctttgattc |
26554166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 98
Target Start/End: Complemental strand, 26554527 - 26554438
Alignment:
| Q |
9 |
atcattgcattcaaattatcttcatcagataagccttcaccagtttcataatctgccatccatgaaggtgtttttcttaccctcccttca |
98 |
Q |
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||||||||||||| | ||||||||| || || |||||||| |||||||| ||| ||||||| | |||| | ||||||||||||||||| |
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| T |
26554527 |
atcattgcattcataccatcttcatctgacaaaccttcacctgtttcatagtcttccatccaacacggtggtcttcttaccctcccttca |
26554438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0617 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold0617
Description:
Target: scaffold0617; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 72
Target Start/End: Original strand, 1611 - 1681
Alignment:
| Q |
2 |
aaccatcatcattgcattcaaattatcttcatcagataagccttcaccagtttcataatctgccatccatg |
72 |
Q |
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||||||||||||||| |||| ||| || |||||||| | ||||| || ||||||||||||| |||||||| |
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| T |
1611 |
aaccatcatcattgcgttcagattttcatcatcagagagaccttcccctgtttcataatctgtcatccatg |
1681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0617; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 72
Target Start/End: Original strand, 7055 - 7125
Alignment:
| Q |
2 |
aaccatcatcattgcattcaaattatcttcatcagataagccttcaccagtttcataatctgccatccatg |
72 |
Q |
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||||||||||||||| |||| ||| || |||||||| | ||||| || ||||||||||||| |||||||| |
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| T |
7055 |
aaccatcatcattgcgttcagattttcatcatcagagagaccttcccctgtttcataatctgtcatccatg |
7125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 72
Target Start/End: Complemental strand, 14246371 - 14246301
Alignment:
| Q |
2 |
aaccatcatcattgcattcaaattatcttcatcagataagccttcaccagtttcataatctgccatccatg |
72 |
Q |
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||||||||||||||| |||| ||| || |||||||| | ||||| || ||||||||||||| |||||||| |
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| T |
14246371 |
aaccatcatcattgcgttcagattttcatcatcagagagaccttcccctgtttcataatctgtcatccatg |
14246301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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