View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2215_high_15 (Length: 250)
Name: NF2215_high_15
Description: NF2215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2215_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 140; Significance: 2e-73; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 93 - 244
Target Start/End: Complemental strand, 29147544 - 29147393
Alignment:
| Q |
93 |
atgaaaaatgagaggagacatacttgaagaataaaccaagcagtgtaagaacagcatgctccaaccaaaaagaaagtgccacgaaacatgttagttttgt |
192 |
Q |
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| T |
29147544 |
atgaaaaatgggaggagacatacttgaagaataaaccaagcagtgtaagaacagcatgctccaaccaaaaagaaagtgccacgaaacatgcgagttttgt |
29147445 |
T |
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| Q |
193 |
gtgctgcaacagcactaatctcagcagaatggtgactatgatgatgatgatg |
244 |
Q |
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| T |
29147444 |
gtgctgcaacagcactaatctcagcagaatggtgactatgatgatgatgatg |
29147393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 107 - 244
Target Start/End: Original strand, 29224151 - 29224288
Alignment:
| Q |
107 |
gagacatacttgaagaataaaccaagcagtgtaagaacagcatgctccaaccaaaaagaaagtgccacgaaacatgttagttttgtgtgctgcaacagca |
206 |
Q |
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| T |
29224151 |
gagacatacttgaagaataaaccaagcagtgtaagaacagcatgctccaaccaaaaagaaagtgccacgaaacatgtgagttttgtgtgctgcaacagca |
29224250 |
T |
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| Q |
207 |
ctaatctcagcagaatggtgactatgatgatgatgatg |
244 |
Q |
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| T |
29224251 |
ctaatctcagcagaatggtgactatgatgatgatgatg |
29224288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 7 - 68
Target Start/End: Original strand, 29224074 - 29224135
Alignment:
| Q |
7 |
tatataagagttaagccgaaagaaatcagaatcatctcattcaagcgttcttgacaatcaat |
68 |
Q |
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| T |
29224074 |
tatataagagttaagccgaaagaaatcagaatcatctcattcaagtgttcttggcaatcaat |
29224135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 110 - 239
Target Start/End: Original strand, 5303850 - 5303979
Alignment:
| Q |
110 |
acatacttgaagaataaaccaagcagtgtaagaacagcatgctccaaccaaaaagaaagtgccacgaaacatgttagttttgtgtgctgcaacagcacta |
209 |
Q |
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| T |
5303850 |
acatacttgcagaataaaccaagctgtgtaaaagcaacatgatccaaccaaaaagaaagttccacgaagcatatgagttttatgtgctacaacagaaata |
5303949 |
T |
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| Q |
210 |
atctcagcagaatggtgactatgatgatga |
239 |
Q |
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| T |
5303950 |
acccctgcagaatgggaactatgatgatga |
5303979 |
T |
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