View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2215_high_17 (Length: 246)
Name: NF2215_high_17
Description: NF2215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2215_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 11 - 228
Target Start/End: Complemental strand, 49654787 - 49654570
Alignment:
| Q |
11 |
caaaggtgtagattgaaactgataagggtcacgatcaaggcctgcacacatgtagggtaatggtggaacatagtaagaaggacaacccattgttcccatg |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49654787 |
caaaggtgtagattgaaactgataagggtcacgatcaaggcctgcacacatgtagggtaatggtggaacatagtaagaaggacaacccattgttcccatg |
49654688 |
T |
|
| Q |
111 |
ggacataatctgttgtaagttgcatattgtaccaaaggaggataacatgtttctggatacaacatgtacgattgctgacgtgtagggctgagattcactt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49654687 |
ggacataatctgttgtaagttgcatattgtaccaaaggaggataacatgtttctggatacaacatgtacgattgctgacgtgtagggctgagattcactt |
49654588 |
T |
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| Q |
211 |
gccccacaacctgacctg |
228 |
Q |
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|||||||||||||||||| |
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| T |
49654587 |
gccccacaacctgacctg |
49654570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 11 - 182
Target Start/End: Complemental strand, 16486434 - 16486263
Alignment:
| Q |
11 |
caaaggtgtagattgaaactgataagggtcacgatcaaggcctgcacacatgtagggtaatggtggaacatagtaagaaggacaacccattgttcccatg |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
16486434 |
caaaggtgtagattgaaactgataagggtcacgatcaaagcctgtacacatgcagggtaatggtggaacatagtaagaaggacaacccattgttcgaatg |
16486335 |
T |
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| Q |
111 |
ggacataatctgttgtaagttgcatattgtaccaaaggaggataacatgtttctggatacaacatgtacgat |
182 |
Q |
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| T |
16486334 |
ggacctaatctgttgtaagttacatattgtaccaaaggaggataacatgtttctgcatacaacatgtacgat |
16486263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 11 - 182
Target Start/End: Original strand, 21816476 - 21816647
Alignment:
| Q |
11 |
caaaggtgtagattgaaactgataagggtcacgatcaaggcctgcacacatgtagggtaatggtggaacatagtaagaaggacaacccattgttcccatg |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
21816476 |
caaaggtgtagattgaaactgataagggtcacgatcaaagcctgtacacatgcagggtaatggtggaacatagtaagaaggacaacccattgttcgaatg |
21816575 |
T |
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| Q |
111 |
ggacataatctgttgtaagttgcatattgtaccaaaggaggataacatgtttctggatacaacatgtacgat |
182 |
Q |
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|||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
21816576 |
ggacctaatctgttgtaagttacatattgtaccaaaggaggataacatgtttctgcatacaacatgtacgat |
21816647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 211
Target Start/End: Original strand, 14381448 - 14381479
Alignment:
| Q |
180 |
gattgctgacgtgtagggctgagattcacttg |
211 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
14381448 |
gattgctgacgtgtagggctgagattcacttg |
14381479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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