View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2215_high_19 (Length: 235)
Name: NF2215_high_19
Description: NF2215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2215_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 50338299 - 50338080
Alignment:
| Q |
1 |
tatatgcacggaaaatgaagctgaactaacaaatatgaagaagnnnnnnnntgcaaaatgaatcccaatcgtatgggaatatggcgtcaaatgtcaccat |
100 |
Q |
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| T |
50338299 |
tatatgcacggaaaatgaagctgaactaacaaatatgaagaagaaaaaaa-tgcaaagtgcatcccaatcgtatgggaatatggcgtcaaatgtcaccat |
50338201 |
T |
|
| Q |
101 |
ttgtgtttcccaatcatttctcatagccattgatgagttgatgtacttctacactttccacttatacatggcttccatttggaattgtaacatgtaggaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
50338200 |
ttgtgtttcccaatcatttctcatagccattgatgagttgatgtacttctacactttccacttatacatggcttccatttggagttgtaacatgtaggaa |
50338101 |
T |
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| Q |
201 |
acatttctcctagtagaaagt |
221 |
Q |
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||| ||||||||||||||||| |
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| T |
50338100 |
acacttctcctagtagaaagt |
50338080 |
T |
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