View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2215_high_2 (Length: 868)

Name: NF2215_high_2
Description: NF2215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2215_high_2
NF2215_high_2
[»] chr1 (22 HSPs)
chr1 (10-852)||(6487647-6488501)
chr1 (93-178)||(526996-527081)
chr1 (95-178)||(26040972-26041055)
chr1 (629-770)||(8382229-8382370)
chr1 (93-178)||(39858347-39858432)
chr1 (93-178)||(46845753-46845838)
chr1 (90-151)||(1673366-1673427)
chr1 (91-164)||(1994951-1995024)
chr1 (91-151)||(27325752-27325812)
chr1 (630-767)||(31834820-31834959)
chr1 (92-176)||(44797565-44797649)
chr1 (97-174)||(29637311-29637388)
chr1 (93-166)||(49430573-49430646)
chr1 (93-151)||(2403049-2403107)
chr1 (96-178)||(15225088-15225170)
chr1 (92-174)||(32267566-32267648)
chr1 (124-178)||(40314123-40314177)
chr1 (93-174)||(40294832-40294913)
chr1 (94-178)||(13276561-13276645)
chr1 (95-173)||(7178213-7178291)
chr1 (119-149)||(34311347-34311377)
chr1 (127-172)||(19989273-19989318)
[»] chr4 (21 HSPs)
chr4 (91-178)||(5817477-5817564)
chr4 (96-178)||(51579323-51579405)
chr4 (91-178)||(20107108-20107196)
chr4 (93-176)||(37605790-37605873)
chr4 (93-176)||(55281208-55281291)
chr4 (91-165)||(17044001-17044075)
chr4 (93-178)||(25784005-25784090)
chr4 (94-165)||(25164581-25164652)
chr4 (93-164)||(32525133-32525204)
chr4 (92-178)||(24059230-24059316)
chr4 (93-175)||(43749092-43749174)
chr4 (93-151)||(45996018-45996076)
chr4 (93-178)||(42179234-42179319)
chr4 (93-178)||(50498210-50498295)
chr4 (95-163)||(48525328-48525396)
chr4 (88-139)||(39631274-39631325)
chr4 (90-176)||(22364560-22364646)
chr4 (92-166)||(51579580-51579653)
chr4 (94-158)||(32290215-32290279)
chr4 (98-178)||(41277220-41277300)
chr4 (97-166)||(36851231-36851300)
[»] chr8 (17 HSPs)
chr8 (101-177)||(8368469-8368545)
chr8 (90-178)||(45413635-45413723)
chr8 (89-178)||(28897991-28898080)
chr8 (94-176)||(43066003-43066085)
chr8 (93-178)||(2599531-2599616)
chr8 (98-178)||(41075694-41075774)
chr8 (94-172)||(27497174-27497251)
chr8 (92-165)||(1993750-1993823)
chr8 (93-178)||(10391402-10391487)
chr8 (95-175)||(11904855-11904935)
chr8 (98-178)||(31774729-31774809)
chr8 (93-151)||(14342313-14342371)
chr8 (121-173)||(16465714-16465766)
chr8 (632-715)||(42351740-42351823)
chr8 (188-226)||(5749069-5749107)
chr8 (119-173)||(45502688-45502742)
chr8 (93-150)||(4077086-4077143)
[»] chr3 (12 HSPs)
chr3 (94-178)||(23004757-23004841)
chr3 (93-177)||(8330690-8330774)
chr3 (93-176)||(50989203-50989286)
chr3 (93-176)||(51092335-51092418)
chr3 (97-174)||(33288136-33288213)
chr3 (96-165)||(38247801-38247870)
chr3 (88-175)||(9271105-9271192)
chr3 (94-176)||(12224102-12224184)
chr3 (101-166)||(54713532-54713597)
chr3 (93-144)||(29915090-29915141)
chr3 (93-144)||(29964243-29964294)
chr3 (90-176)||(48034908-48034994)
[»] chr6 (8 HSPs)
chr6 (99-176)||(29429590-29429667)
chr6 (90-165)||(14314096-14314171)
chr6 (93-178)||(23915972-23916057)
chr6 (96-176)||(1244655-1244735)
chr6 (93-151)||(9045833-9045891)
chr6 (93-145)||(34792781-34792833)
chr6 (91-149)||(9521943-9522001)
chr6 (99-172)||(12748217-12748290)
[»] chr2 (13 HSPs)
chr2 (93-166)||(4434699-4434772)
chr2 (93-175)||(32599348-32599430)
chr2 (93-178)||(3121610-3121695)
chr2 (94-165)||(13697075-13697146)
chr2 (92-163)||(14945848-14945919)
chr2 (96-178)||(36272758-36272840)
chr2 (93-178)||(33299979-33300064)
chr2 (91-178)||(5562934-5563021)
chr2 (94-176)||(42061330-42061412)
chr2 (93-178)||(24475798-24475883)
chr2 (92-164)||(40095262-40095334)
chr2 (93-151)||(14242639-14242697)
chr2 (122-163)||(25333173-25333214)
[»] chr5 (8 HSPs)
chr5 (93-176)||(13988247-13988330)
chr5 (93-176)||(36890377-36890460)
chr5 (93-178)||(15285329-15285414)
chr5 (119-175)||(12248299-12248355)
chr5 (92-151)||(11247191-11247250)
chr5 (96-166)||(1447856-1447926)
chr5 (188-226)||(20151478-20151516)
chr5 (95-173)||(43100310-43100388)
[»] chr7 (12 HSPs)
chr7 (91-178)||(31741041-31741128)
chr7 (92-151)||(46576366-46576425)
chr7 (92-165)||(48460658-48460731)
chr7 (122-174)||(43359001-43359053)
chr7 (91-178)||(38754992-38755079)
chr7 (95-178)||(42974475-42974558)
chr7 (100-178)||(11752604-11752682)
chr7 (95-175)||(28713679-28713759)
chr7 (95-175)||(38349559-38349639)
chr7 (188-226)||(38754937-38754975)
chr7 (193-238)||(33496608-33496653)
chr7 (93-166)||(47480122-47480194)


Alignment Details
Target: chr1 (Bit Score: 591; Significance: 0; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 591; E-Value: 0
Query Start/End: Original strand, 10 - 852
Target Start/End: Original strand, 6487647 - 6488501
Alignment:
Q  10 catcatcatattgtatgacacgttcatttaaaatacggcacatcatcatttttgttctttgtnnnnnnnntctattgcttaatgagtagtgatacataga 109  Q
    |||||||| ||||| |||||||||||||||||||||| ||||||||||||| ||||||| ||          ||||||||||||||||||||||||||||    
T  6487647 catcatcagattgt-tgacacgttcatttaaaatacgacacatcatcatttatgttcttcgtaaaaaaaca-tattgcttaatgagtagtgatacataga 6487744  T
Q  110 ctaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtccccacnnnnnnnntatttttt-gtctctcacacacg 208  Q
    | |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||         ||||||| ||||||||||||||    
T  6487745 ccaatttaggtggcatgtaccacttgtacatccacacacaattgtgacatgtgtccacgtggtccccacaaaaaaataatttttttgtctctcacacacg 6487844  T
Q  209 ctcacatgggg--tggtatattgtgtatatggnnnnnnnngagtgtcaatgaaacattagccttgtttgaatgatgagtgtatgttgcttataaactata 306  Q
    |||| ||||||  |||||||||||||||||||        |||||||| |||||||||| |||||||||| |||||||||||||||| ||||||||||||    
T  6487845 ctcatatgggggatggtatattgtgtatatggaaaaaa--gagtgtcagtgaaacattatccttgtttgattgatgagtgtatgttgtttataaactata 6487942  T
Q  307 attagattcgattctcaagcaagattgaactatttaagtgtaccacaatagacccctcccgtcgaggttaactccacaacactagagtgcattctagcgc 406  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  6487943 attagattcgattctcaagcaagattgaactatttaagtgtaccacaatagacccctcccgtcgaggtta-ctccacaacactagagtgcattctagcgc 6488041  T
Q  407 aaaagttccgacctcaacttcacaacactagagtgcatttttt-aagtattgtgcgctttgaaccttgtgtgagtttttatcatttcattctttctaaaa 505  Q
    |||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  6488042 aaaagttccgacctcaactttacaacactagagtgcatttttttaagtattgtgcgttttgaaccttgtgtgagtttttatcatttcgttctttctaaaa 6488141  T
Q  506 gatatcttgttggattgaagagtgtgaatgt-gtttataaactacgcttagtgtcgatttctaatcaatgtaaaa------------atggtttattata 592  Q
    ||| ||| |||| |||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||            ||||||||||| |    
T  6488142 gatgtctcgttgaattgaagagtatgaatgttgtttataaactacgcttagtgtcgatttctaaccaatgtaaaactatcttagtgtatggtttattaca 6488241  T
Q  593 ttatgtaacatgactgcgcctatatttaactatgcagtgccattttcacatcaggccaaaactttggcaagaagtcacgtttccagtgaaactacaaata 692  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6488242 ttatgtaacatgactgcgcctatatttaactatgcagtgccattttcacatcaggccaaaactttggcaagaagtcacgtttccagtgaaactacaaata 6488341  T
Q  693 gtggcttcttcaaatcactgcaaaaaggcttccaaacatgtggcaaccattgcaaatccctaaaccaaacacatactatataaccatatcatatgtttat 792  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6488342 gtggcttcttcaaatcactgcaaaaaggcttccaaacatgtggcaaccattgcaaatccctaaaccaaacacatactatataaccatatcatatgtttat 6488441  T
Q  793 tttttattttaagaatttaatgcttgattggtcttcataaagtgggctaacagtatgatg 852  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6488442 tttttattttaagaatttaatgcttgattggtcttcataaagtgggctaacagtatgatg 6488501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 93 - 178
Target Start/End: Complemental strand, 527081 - 526996
Alignment:
Q  93 gagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtccccac 178  Q
    |||||||||||||||||| |  ||| |||||||||||||||| |||| ||| ||||||| |||||||||||||| |||||||||||    
T  527081 gagtagtgatacatagaccaccttaggtggcatgtaccacttatacacccatacacaattgtgacatgtgtccatgtggtccccac 526996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 95 - 178
Target Start/End: Original strand, 26040972 - 26041055
Alignment:
Q  95 gtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtccccac 178  Q
    ||||||||||| | || |  ||| ||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||    
T  26040972 gtagtgatacacaaaccaccttaggtggcatgtaccacttgtacacccacatacaattgtgacatgtgtccacgtggtccccac 26041055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 629 - 770
Target Start/End: Complemental strand, 8382370 - 8382229
Alignment:
Q  629 gtgccattttcacatcaggccaaaactttggcaagaagtcacgtttccagtgaaactacaaatagtggcttcttcaaatcactgcaaaaaggcttccaaa 728  Q
    ||||||||| ||||||| |||||||    |||| ||| |||||||| ||||||| ||||  ||||| |||| | | |||||| ||||||||||||| |||    
T  8382370 gtgccatttccacatcaagccaaaatcacggcaggaactcacgtttgcagtgaagctacgtatagtagcttttccgaatcacggcaaaaaggcttcaaaa 8382271  T
Q  729 catgtggcaaccattgcaaatccctaaaccaaacacatacta 770  Q
    | || |||| |||||| ||| | |||||||||||||||||||    
T  8382270 cgtgcggcagccattggaaaactctaaaccaaacacatacta 8382229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 93 - 178
Target Start/End: Original strand, 39858347 - 39858432
Alignment:
Q  93 gagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtccccac 178  Q
    |||||||||||||||||| |  ||| ||||||| |||||||| |||| ||| ||||||| |||||||||||||| |||||||||||    
T  39858347 gagtagtgatacatagaccaccttaggtggcatataccacttatacacccatacacaattgtgacatgtgtccatgtggtccccac 39858432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 93 - 178
Target Start/End: Complemental strand, 46845838 - 46845753
Alignment:
Q  93 gagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtccccac 178  Q
    |||||||||||||||||| |  |||  ||||||||||||||| |||| ||| ||||||| |||||||||||||| |||||||||||    
T  46845838 gagtagtgatacatagaccaccttagatggcatgtaccacttatacacccatacacaattgtgacatgtgtccatgtggtccccac 46845753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 90 - 151
Target Start/End: Original strand, 1673366 - 1673427
Alignment:
Q  90 aatgagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaat 151  Q
    ||||||||||||||||||||| |  ||| ||||||||||||||||||||| |||||||||||    
T  1673366 aatgagtagtgatacatagaccatcttaggtggcatgtaccacttgtacacccacacacaat 1673427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 91 - 164
Target Start/End: Original strand, 1994951 - 1995024
Alignment:
Q  91 atgagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtc 164  Q
    |||||||||||||||||||| |  ||| ||||||||||||||||||||| |||||||||||  ||||| |||||    
T  1994951 atgagtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccacacacaattttgacaagtgtc 1995024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 91 - 151
Target Start/End: Complemental strand, 27325812 - 27325752
Alignment:
Q  91 atgagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaat 151  Q
    |||||||||||||||||||| |  ||| ||||||||||||||||||||| |||||||||||    
T  27325812 atgagtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccacacacaat 27325752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 630 - 767
Target Start/End: Complemental strand, 31834959 - 31834820
Alignment:
Q  630 tgccattttcacatcaggccaaaactttggcaagaagtcacgtttccagtgaaactac--aaatagtggcttcttcaaatcactgcaaaaaggcttccaa 727  Q
    |||||||||||||||||| ||||||   | |||||| ||||||||||| |||| ||||  | ||||| |||| |||||||||| | | ||||| ||| ||    
T  31834959 tgccattttcacatcaggtcaaaaccacgacaagaactcacgtttccaatgaagctacatatatagtagctttttcaaatcacggaacaaaggtttcaaa 31834860  T
Q  728 acatgtggcaaccattgcaaatccctaaaccaaacacata 767  Q
    || |||| ||  ||||||||| | ||||||||||||||||    
T  31834859 acgtgtgtcagtcattgcaaaactctaaaccaaacacata 31834820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 92 - 176
Target Start/End: Complemental strand, 44797649 - 44797565
Alignment:
Q  92 tgagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtcccc 176  Q
    ||||||||||||||||||| |  ||| ||||||||||||||||||||| |||||||||||  ||| | ||||||  |||||||||    
T  44797649 tgagtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccacacacaattttgataagtgtccttgtggtcccc 44797565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 97 - 174
Target Start/End: Complemental strand, 29637388 - 29637311
Alignment:
Q  97 agtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtcc 174  Q
    |||||||||||||| |  ||| ||||||||||||||||||||| |||||||||||  ||||| ||||||  |||||||    
T  29637388 agtgatacatagaccatcttaggtggcatgtaccacttgtacacccacacacaattttgacaagtgtccttgtggtcc 29637311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 93 - 166
Target Start/End: Complemental strand, 49430646 - 49430573
Alignment:
Q  93 gagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtcca 166  Q
    |||| ||||||||||||| |  ||| |||||||||||||||| |||||| | ||||||| ||||||||||||||    
T  49430646 gagtggtgatacatagaccaccttaggtggcatgtaccacttatacatcaatacacaattgtgacatgtgtcca 49430573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 151
Target Start/End: Complemental strand, 2403107 - 2403049
Alignment:
Q  93 gagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaat 151  Q
    |||||||||||||||||| |  |||  |||||||||||||||||||| |||||||||||    
T  2403107 gagtagtgatacatagaccatcttagatggcatgtaccacttgtacacccacacacaat 2403049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 178
Target Start/End: Complemental strand, 15225170 - 15225088
Alignment:
Q  96 tagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtccccac 178  Q
    ||||||||||||||| |  ||| ||||||||||| |||| |||| |||||  |||| ||||||| ||||||| ||||||||||    
T  15225170 tagtgatacatagaccaccttaggtggcatgtacaacttatacacccacatgcaattgtgacatatgtccacatggtccccac 15225088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 174
Target Start/End: Complemental strand, 32267648 - 32267566
Alignment:
Q  92 tgagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtcc 174  Q
    ||||||||||||||||||| |  ||| ||||||||||| | ||||||| |||||||||||  ||||| ||||||  |||||||    
T  32267648 tgagtagtgatacatagaccatcttaagtggcatgtacaatttgtacacccacacacaattttgacaagtgtccttgtggtcc 32267566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 124 - 178
Target Start/End: Original strand, 40314123 - 40314177
Alignment:
Q  124 atgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtccccac 178  Q
    |||||||| || |||||||| ||||||| |||||||||||||| |||||||||||    
T  40314123 atgtaccatttatacatccatacacaattgtgacatgtgtccatgtggtccccac 40314177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 174
Target Start/End: Complemental strand, 40294913 - 40294832
Alignment:
Q  93 gagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtcc 174  Q
    |||||||||||||||||| | |||| |||||| ||||||||||| || | | ||||||| ||||||||| || | |||||||    
T  40294913 gagtagtgatacatagaccactttaggtggcacgtaccacttgtccacctatacacaattgtgacatgtatctatgtggtcc 40294832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 178
Target Start/End: Complemental strand, 13276645 - 13276561
Alignment:
Q  94 agtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtccccac 178  Q
    ||||||||||||||||| |  ||| |||| ||||||||||| ||||  || |||||||  ||||||||||||| ||||| |||||    
T  13276645 agtagtgatacatagaccaccttaggtggtatgtaccacttatacactcatacacaattatgacatgtgtccatgtggtacccac 13276561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 173
Target Start/End: Complemental strand, 7178291 - 7178213
Alignment:
Q  95 gtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtc 173  Q
    |||||||||||||||| |  ||| ||| ||||||||| ||||||| ||||| ||||| |||||| ||||| | ||||||    
T  7178291 gtagtgatacatagaccaccttaggtgacatgtaccatttgtacacccacatacaattgtgacaagtgtctatgtggtc 7178213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 149
Target Start/End: Complemental strand, 34311377 - 34311347
Alignment:
Q  119 gtggcatgtaccacttgtacatccacacaca 149  Q
    |||||||||||||||||||||||||||||||    
T  34311377 gtggcatgtaccacttgtacatccacacaca 34311347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 172
Target Start/End: Original strand, 19989273 - 19989318
Alignment:
Q  127 taccacttgtacatccacacacaatggtgacatgtgtccacgtggt 172  Q
    ||||||||||||||||||| ||||  |||||||||||||| |||||    
T  19989273 taccacttgtacatccacatacaagtgtgacatgtgtccatgtggt 19989318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 4e-25; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 91 - 178
Target Start/End: Complemental strand, 5817564 - 5817477
Alignment:
Q  91 atgagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtccccac 178  Q
    |||||||||||||||||||| |  ||| ||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||    
T  5817564 atgagtagtgatacatagaccatcttaggtggcatgtaccacttgtacacccacacacaattgtgacatgtgtccatgtggtccccac 5817477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 96 - 178
Target Start/End: Original strand, 51579323 - 51579405
Alignment:
Q  96 tagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtccccac 178  Q
    ||||||||||||||| |  ||| ||||||||||||||||||||| ||||| ||||| |||||||||||||| ||||| |||||    
T  51579323 tagtgatacatagaccaccttaggtggcatgtaccacttgtacacccacatacaattgtgacatgtgtccatgtggttcccac 51579405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 91 - 178
Target Start/End: Original strand, 20107108 - 20107196
Alignment:
Q  91 atgagtagtgatacatagactaatttatgtggcatgtaccacttgtaca-tccacacacaatggtgacatgtgtccacgtggtccccac 178  Q
    |||||||||||||||||||| |  ||| |||||||||||||||||||||  || |||||||| |||||||||||||| ||||| |||||    
T  20107108 atgagtagtgatacatagaccaccttaggtggcatgtaccacttgtacaccccgcacacaattgtgacatgtgtccatgtggttcccac 20107196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 93 - 176
Target Start/End: Complemental strand, 37605873 - 37605790
Alignment:
Q  93 gagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtcccc 176  Q
    |||||||||||||||||| |  ||| ||||||||||||||||||||| |||||||||||  ||||| ||||||  |||||||||    
T  37605873 gagtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccacacacaattttgacaagtgtccttgtggtcccc 37605790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 93 - 176
Target Start/End: Original strand, 55281208 - 55281291
Alignment:
Q  93 gagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtcccc 176  Q
    |||||||||||||||||| |  ||| ||||||||||||||||||||| |||||||||||  ||||| ||||||  |||||||||    
T  55281208 gagtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccacacacaattttgacaagtgtccttgtggtcccc 55281291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 91 - 165
Target Start/End: Original strand, 17044001 - 17044075
Alignment:
Q  91 atgagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtcc 165  Q
    |||||||||||||||||||| |  ||| ||||||||||||||||||||| |||||||||||  ||||| ||||||    
T  17044001 atgagtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccacacacaattttgacaagtgtcc 17044075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 93 - 178
Target Start/End: Complemental strand, 25784090 - 25784005
Alignment:
Q  93 gagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtccccac 178  Q
    |||||||||||||||||  |  ||| ||||||||||||||||||||||||||||| ||| ||||||||| | || || ||||||||    
T  25784090 gagtagtgatacatagatcatcttaggtggcatgtaccacttgtacatccacacataattgtgacatgtattcatgtagtccccac 25784005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 94 - 165
Target Start/End: Complemental strand, 25164652 - 25164581
Alignment:
Q  94 agtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtcc 165  Q
    ||||||||||||||||| |  ||| ||||||||||||||||||||| |||||||||||  ||||| ||||||    
T  25164652 agtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccacacacaattttgacaagtgtcc 25164581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 93 - 164
Target Start/End: Complemental strand, 32525204 - 32525133
Alignment:
Q  93 gagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtc 164  Q
    |||||||||||||||||| |  ||| ||||||| |||||||| |||||||||||||||| |||| |||||||    
T  32525204 gagtagtgatacatagaccatcttaggtggcatataccacttatacatccacacacaattgtgatatgtgtc 32525133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 92 - 178
Target Start/End: Complemental strand, 24059316 - 24059230
Alignment:
Q  92 tgagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtccccac 178  Q
    ||||||||||||||||||| |  |||  ||||||||| || ||||||| ||||| ||||| |||||||||||||| ||||| |||||    
T  24059316 tgagtagtgatacatagaccaccttagatggcatgtatcatttgtacacccacatacaattgtgacatgtgtccatgtggttcccac 24059230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 93 - 175
Target Start/End: Original strand, 43749092 - 43749174
Alignment:
Q  93 gagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtccc 175  Q
    |||||||||||||||||| |  ||| ||||||||||||||||||||| ||||||| |||  ||||| ||||||  ||||||||    
T  43749092 gagtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccacacataattttgacaagtgtccttgtggtccc 43749174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 93 - 151
Target Start/End: Complemental strand, 45996076 - 45996018
Alignment:
Q  93 gagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaat 151  Q
    |||||||||||||||||| |  ||| ||||||||||||||||||||| |||||||||||    
T  45996076 gagtagtgatacatagaccatcttaggtggcatgtaccacttgtacacccacacacaat 45996018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 93 - 178
Target Start/End: Complemental strand, 42179319 - 42179234
Alignment:
Q  93 gagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtccccac 178  Q
    ||||| |||||||||||| |  ||| |||| ||||||||||| |||| |||  |||||| |||||||||||||| |||||||||||    
T  42179319 gagtaatgatacatagaccaccttaggtggtatgtaccacttatacacccatgcacaattgtgacatgtgtccatgtggtccccac 42179234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 93 - 178
Target Start/End: Original strand, 50498210 - 50498295
Alignment:
Q  93 gagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtccccac 178  Q
    |||||||||||||||||  |  ||| || | ||||||||||| |||| ||| ||||||| |||||||||||||| |||||||||||    
T  50498210 gagtagtgatacatagatcaccttaggtagtatgtaccacttatacacccatacacaattgtgacatgtgtccatgtggtccccac 50498295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 95 - 163
Target Start/End: Original strand, 48525328 - 48525396
Alignment:
Q  95 gtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgt 163  Q
    ||||||||||||| || | |||| ||||||| ||||||||||||||||||| | ||| |||||||||||    
T  48525328 gtagtgatacataaaccactttaggtggcatataccacttgtacatccacatataattgtgacatgtgt 48525396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 88 - 139
Target Start/End: Complemental strand, 39631325 - 39631274
Alignment:
Q  88 ttaatgagtagtgatacatagactaatttatgtggcatgtaccacttgtaca 139  Q
    ||||||||||||||||||||||| |  ||| |||||||||||||||||||||    
T  39631325 ttaatgagtagtgatacatagaccaccttaggtggcatgtaccacttgtaca 39631274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 176
Target Start/End: Complemental strand, 22364646 - 22364560
Alignment:
Q  90 aatgagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtcccc 176  Q
    |||||||||||||||||| |  || ||| ||||||| |||||||| |||| ||| | ||||| |||| ||||||||| |||||||||    
T  22364646 aatgagtagtgatacataaatcaacttaggtggcatataccacttatacacccatatacaattgtgatatgtgtccatgtggtcccc 22364560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 166
Target Start/End: Original strand, 51579580 - 51579653
Alignment:
Q  92 tgagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtcca 166  Q
    |||||||||||||| |||| |  ||| ||||||||||||||||||||| ||| | ||||| ||||||||||||||    
T  51579580 tgagtagtgataca-agaccaccttaggtggcatgtaccacttgtacacccaaatacaattgtgacatgtgtcca 51579653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 158
Target Start/End: Original strand, 32290215 - 32290279
Alignment:
Q  94 agtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgaca 158  Q
    ||||||||||||||||| |  ||| |||||||||||||||| |||| ||| ||||||| ||||||    
T  32290215 agtagtgatacatagaccatcttaggtggcatgtaccacttatacacccatacacaattgtgaca 32290279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 178
Target Start/End: Original strand, 41277220 - 41277300
Alignment:
Q  98 gtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtccccac 178  Q
    ||||||||||||  |  ||| ||| |||||||||| |||||| ||||| ||||| ||||||||||| || |||||||||||    
T  41277220 gtgatacatagatcaccttaggtgacatgtaccacctgtacacccacatacaattgtgacatgtgttcatgtggtccccac 41277300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 166
Target Start/End: Original strand, 36851231 - 36851300
Alignment:
Q  97 agtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtcca 166  Q
    |||||| ||||||| |  ||| ||||||||||||||||||||| |||| ||  || ||||||||||||||    
T  36851231 agtgatgcatagaccaccttaagtggcatgtaccacttgtacacccacgcatgattgtgacatgtgtcca 36851300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 6e-21; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 101 - 177
Target Start/End: Complemental strand, 8368545 - 8368469
Alignment:
Q  101 atacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtcccca 177  Q
    |||||||||| |  ||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  8368545 atacatagaccaccttaggtggcatgtaccacttgtacacccacacacaattgtgacatgtgtccacgtggtcccca 8368469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 90 - 178
Target Start/End: Complemental strand, 45413723 - 45413635
Alignment:
Q  90 aatgagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtccccac 178  Q
    ||||||||||||||||||||| |  ||| |||||||||||||||| |||||||| ||||||| ||||||||||||||  ||||||||||    
T  45413723 aatgagtagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatatggtccccac 45413635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 89 - 178
Target Start/End: Original strand, 28897991 - 28898080
Alignment:
Q  89 taatgagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtccccac 178  Q
    |||||||||||||||||||||| |  ||| ||||||| |||||||| |||| ||| ||||||| |||||||||||||| |||||||||||    
T  28897991 taatgagtagtgatacatagaccaccttaggtggcatataccacttatacacccatacacaattgtgacatgtgtccatgtggtccccac 28898080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 94 - 176
Target Start/End: Complemental strand, 43066085 - 43066003
Alignment:
Q  94 agtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtcccc 176  Q
    ||||||||||||||||| |  ||| |||||||||||||||||||||||||||||||||  ||||| ||||||  |||||||||    
T  43066085 agtagtgatacatagaccaccttaggtggcatgtaccacttgtacatccacacacaattttgacaagtgtccttgtggtcccc 43066003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 93 - 178
Target Start/End: Original strand, 2599531 - 2599616
Alignment:
Q  93 gagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtccccac 178  Q
    |||||||||||||||||| |  ||| |||||||||||||||| |||| ||| ||||||| ||||||||||| || |||||||||||    
T  2599531 gagtagtgatacatagaccaccttaggtggcatgtaccacttatacacccatacacaattgtgacatgtgttcatgtggtccccac 2599616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 98 - 178
Target Start/End: Complemental strand, 41075774 - 41075694
Alignment:
Q  98 gtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtccccac 178  Q
    ||||||||||||| |  ||| ||| ||||||||||||||||| ||||| ||||| ||||||||||| || |||||||||||    
T  41075774 gtgatacatagaccaccttaggtgacatgtaccacttgtacacccacatacaattgtgacatgtgttcatgtggtccccac 41075694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 94 - 172
Target Start/End: Original strand, 27497174 - 27497251
Alignment:
Q  94 agtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggt 172  Q
    |||||||||||| |||| | |||| ||||||||||||||||||||||||||| ||||| | ||||||||| || |||||    
T  27497174 agtagtgataca-agaccactttaggtggcatgtaccacttgtacatccacagacaattgcgacatgtgttcatgtggt 27497251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 92 - 165
Target Start/End: Complemental strand, 1993823 - 1993750
Alignment:
Q  92 tgagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtcc 165  Q
    ||||||||||||||||||| |  ||| |||||||||| |||||||||| |||||||||||  ||||| ||||||    
T  1993823 tgagtagtgatacatagaccaccttaggtggcatgtatcacttgtacacccacacacaattttgacaagtgtcc 1993750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 93 - 178
Target Start/End: Complemental strand, 10391487 - 10391402
Alignment:
Q  93 gagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtccccac 178  Q
    ||||| |||||||||||  |  ||| ||||||||| |||||| |||| ||| ||||||| |||||||||||||| |||||||||||    
T  10391487 gagtaatgatacatagatcatcttaggtggcatgtgccacttatacacccatacacaattgtgacatgtgtccatgtggtccccac 10391402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 95 - 175
Target Start/End: Original strand, 11904855 - 11904935
Alignment:
Q  95 gtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtccc 175  Q
    ||||||||||||| || |  ||| ||||||| ||||||||||||| ||||| | ||| |||||||||||||| ||||||||    
T  11904855 gtagtgatacataaaccaccttaggtggcatataccacttgtacacccacatataattgtgacatgtgtccatgtggtccc 11904935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 178
Target Start/End: Original strand, 31774729 - 31774809
Alignment:
Q  98 gtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtccccac 178  Q
    ||||||||||||| |  ||| ||| |||||||||||||||||  |||| ||||| ||||||||||| || |||||||||||    
T  31774729 gtgatacatagaccaccttaggtgacatgtaccacttgtacactcacatacaattgtgacatgtgttcatgtggtccccac 31774809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 151
Target Start/End: Complemental strand, 14342371 - 14342313
Alignment:
Q  93 gagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaat 151  Q
    |||||||||||||||||| |  ||| |||||||||||||||| |||| |||||||||||    
T  14342371 gagtagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaat 14342313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 173
Target Start/End: Complemental strand, 16465766 - 16465714
Alignment:
Q  121 ggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtc 173  Q
    ||||||||||||||||| | ||||| ||||| |||||||||||| ||||||||    
T  16465766 ggcatgtaccacttgtatacccacatacaattgtgacatgtgtctacgtggtc 16465714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 632 - 715
Target Start/End: Complemental strand, 42351823 - 42351740
Alignment:
Q  632 ccattttcacatcaggccaaaactttggcaagaagtcacgtttccagtgaaactacaaatagtggcttcttcaaatcactgcaa 715  Q
    |||||||||||||| |||||||    |||| ||| |||||||| ||||||| ||||| ||||| |||| |||||||||| ||||    
T  42351823 ccattttcacatcaagccaaaatcacggcaggaattcacgtttgcagtgaagctacatatagttgctttttcaaatcacggcaa 42351740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 226
Target Start/End: Complemental strand, 5749107 - 5749069
Alignment:
Q  188 attttttgtctctcacacacgctcacatggggtggtata 226  Q
    |||| ||||||||||||||| ||||||||||||||||||    
T  5749107 atttattgtctctcacacactctcacatggggtggtata 5749069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 173
Target Start/End: Original strand, 45502688 - 45502742
Alignment:
Q  119 gtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtc 173  Q
    |||| ||||||||||||||||| || | ||||| |||||||||||||| ||||||    
T  45502688 gtggtatgtaccacttgtacattcatatacaattgtgacatgtgtccatgtggtc 45502742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 150
Target Start/End: Complemental strand, 4077143 - 4077086
Alignment:
Q  93 gagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaa 150  Q
    ||||||||||| |||||| |  ||| ||||||||||||||||||| | ||||||||||    
T  4077143 gagtagtgatatatagaccaccttaggtggcatgtaccacttgtatacccacacacaa 4077086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 1e-18; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 94 - 178
Target Start/End: Original strand, 23004757 - 23004841
Alignment:
Q  94 agtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtccccac 178  Q
    ||||||||||||||||| |  ||| ||||||||||||||||||||| ||||||||||| ||||||||| | || |||||||||||    
T  23004757 agtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccacacacaattgtgacatgtattcatgtggtccccac 23004841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 93 - 177
Target Start/End: Complemental strand, 8330774 - 8330690
Alignment:
Q  93 gagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtcccca 177  Q
    |||||||||||||||||| |  |||  ||||||||||||||||||||| |||||||||| |||| || |||||| ||||||||||    
T  8330774 gagtagtgatacatagaccaccttagatggcatgtaccacttgtacattcacacacaattgtgatatatgtccatgtggtcccca 8330690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 93 - 176
Target Start/End: Original strand, 50989203 - 50989286
Alignment:
Q  93 gagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtcccc 176  Q
    |||||||||||||||||| |  ||| ||||||||||||||||||||| |||||||||||  ||||| ||||||  |||||||||    
T  50989203 gagtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccacacacaattttgacaagtgtccttgtggtcccc 50989286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 93 - 176
Target Start/End: Original strand, 51092335 - 51092418
Alignment:
Q  93 gagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtcccc 176  Q
    |||||||||||||||||| |  ||| ||||||||||||||||||||| |||||||||||  ||||| ||||||  |||||||||    
T  51092335 gagtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccacacacaattttgacaagtgtccttgtggtcccc 51092418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 97 - 174
Target Start/End: Original strand, 33288136 - 33288213
Alignment:
Q  97 agtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtcc 174  Q
    |||||||||||||| |  ||| |||| |||||||||||||||| ||||||||||| |||| ||||||| | |||||||    
T  33288136 agtgatacatagaccaccttaggtggtatgtaccacttgtacacccacacacaattgtgatatgtgtctatgtggtcc 33288213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 96 - 165
Target Start/End: Original strand, 38247801 - 38247870
Alignment:
Q  96 tagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtcc 165  Q
    ||||||||||||||| |  ||| ||||||||||||||||||||| |||||||||||  ||||| ||||||    
T  38247801 tagtgatacatagaccaccttaggtggcatgtaccacttgtacacccacacacaattttgacaagtgtcc 38247870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 88 - 175
Target Start/End: Original strand, 9271105 - 9271192
Alignment:
Q  88 ttaatgagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtccc 175  Q
    |||| |||||||||||||||||| |  |||  |||||||||||||||||||| ||||||| |||  ||||| ||||||  ||||||||    
T  9271105 ttaaagagtagtgatacatagaccaccttagatggcatgtaccacttgtacacccacacataattttgacaagtgtccttgtggtccc 9271192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 176
Target Start/End: Complemental strand, 12224184 - 12224102
Alignment:
Q  94 agtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtcccc 176  Q
    |||||||||||||| || |  ||| ||||||||||||| ||||||| |||||||||||  ||||| ||||||  |||||||||    
T  12224184 agtagtgatacataaaccaccttaggtggcatgtaccatttgtacacccacacacaattttgacaagtgtccttgtggtcccc 12224102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 166
Target Start/End: Original strand, 54713532 - 54713597
Alignment:
Q  101 atacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtcca 166  Q
    |||||||||| |  ||| ||||||||||||||||| ||||||||||| |||  |||||||||||||    
T  54713532 atacatagaccacgttaggtggcatgtaccacttgaacatccacacataattatgacatgtgtcca 54713597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 144
Target Start/End: Complemental strand, 29915141 - 29915090
Alignment:
Q  93 gagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccac 144  Q
    |||||||||||||||||| |  ||||||||||| ||||||||||||| ||||    
T  29915141 gagtagtgatacatagaccaccttatgtggcatataccacttgtacacccac 29915090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 144
Target Start/End: Complemental strand, 29964294 - 29964243
Alignment:
Q  93 gagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccac 144  Q
    |||||||||||||||||| |  ||||||||||| ||||||||||||| ||||    
T  29964294 gagtagtgatacatagaccaccttatgtggcatataccacttgtacacccac 29964243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 176
Target Start/End: Complemental strand, 48034994 - 48034908
Alignment:
Q  90 aatgagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtcccc 176  Q
    ||||||| |||||||||| || |  ||| ||| ||||||||||||||||| ||||| |||||  ||||| ||||||  |||||||||    
T  48034994 aatgagtggtgatacataaaccaccttaggtgacatgtaccacttgtacacccacatacaattttgacaagtgtccttgtggtcccc 48034908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 9e-17; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 99 - 176
Target Start/End: Original strand, 29429590 - 29429667
Alignment:
Q  99 tgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtcccc 176  Q
    ||||||| ||||||  ||| ||||||||||||||||||||| ||||| ||||| ||||||||||||||| ||||||||    
T  29429590 tgatacacagactaccttaggtggcatgtaccacttgtacacccacatacaattgtgacatgtgtccacatggtcccc 29429667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 90 - 165
Target Start/End: Complemental strand, 14314171 - 14314096
Alignment:
Q  90 aatgagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtcc 165  Q
    ||||||||||||||||||||| |  ||| ||||||||||||||||||||| |||||||||||  ||||| ||||||    
T  14314171 aatgagtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccacacacaattttgacaagtgtcc 14314096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 93 - 178
Target Start/End: Original strand, 23915972 - 23916057
Alignment:
Q  93 gagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtccccac 178  Q
    |||||||||||||||||  |  |||  ||||||||||||||| |||| ||| ||||||| |||||||||||||| |||||||||||    
T  23915972 gagtagtgatacatagatcaccttagatggcatgtaccacttatacacccatacacaattgtgacatgtgtccatgtggtccccac 23916057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 96 - 176
Target Start/End: Complemental strand, 1244735 - 1244655
Alignment:
Q  96 tagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtcccc 176  Q
    ||||||||||||||| |  ||| |||||||||||||||||||||||||||||||||  || || ||||||  |||||||||    
T  1244735 tagtgatacatagaccaccttaagtggcatgtaccacttgtacatccacacacaattttggcaagtgtccttgtggtcccc 1244655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 151
Target Start/End: Original strand, 9045833 - 9045891
Alignment:
Q  93 gagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaat 151  Q
    |||||||||||||||||| |  ||| |||||||||| |||||||||| |||||||||||    
T  9045833 gagtagtgatacatagaccaccttaggtggcatgtatcacttgtacacccacacacaat 9045891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 145
Target Start/End: Complemental strand, 34792833 - 34792781
Alignment:
Q  93 gagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccaca 145  Q
    |||||||||||||||||| |  ||| ||||||||||||||||||||| |||||    
T  34792833 gagtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccaca 34792781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 149
Target Start/End: Complemental strand, 9522001 - 9521943
Alignment:
Q  91 atgagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacaca 149  Q
    ||||||||| |||||||||  |  ||| ||||||||||||||||||||| |||||||||    
T  9522001 atgagtagtaatacatagatcaccttaggtggcatgtaccacttgtacacccacacaca 9521943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 172
Target Start/End: Original strand, 12748217 - 12748290
Alignment:
Q  99 tgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggt 172  Q
    ||||||||| || | |||| ||||||| ||||||||||||| ||||| | ||| ||||||| |||||| |||||    
T  12748217 tgatacataaaccactttaggtggcatataccacttgtacacccacatataattgtgacatctgtccatgtggt 12748290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 9e-17; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 93 - 166
Target Start/End: Complemental strand, 4434772 - 4434699
Alignment:
Q  93 gagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtcca 166  Q
    ||||||||||| |||||| |  |||||||||||||||||||||||| ||||||||| || ||||||||||||||    
T  4434772 gagtagtgatatatagaccaccttatgtggcatgtaccacttgtacttccacacactattgtgacatgtgtcca 4434699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 93 - 175
Target Start/End: Complemental strand, 32599430 - 32599348
Alignment:
Q  93 gagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtccc 175  Q
    |||||||||||||||||| |  ||| ||||||||||||||||||||||||||||| |||  ||||| ||||||  ||||||||    
T  32599430 gagtagtgatacatagaccaccttaggtggcatgtaccacttgtacatccacacataattttgacaagtgtccttgtggtccc 32599348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 93 - 178
Target Start/End: Original strand, 3121610 - 3121695
Alignment:
Q  93 gagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtccccac 178  Q
    |||||||||||||||||| |  |||  ||||||||||||||| ||||  || ||||||| |||||||||||||| |||||||||||    
T  3121610 gagtagtgatacatagaccaccttagatggcatgtaccacttatacactcatacacaattgtgacatgtgtccatgtggtccccac 3121695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 94 - 165
Target Start/End: Complemental strand, 13697146 - 13697075
Alignment:
Q  94 agtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtcc 165  Q
    ||||||||||||||||| |  ||| ||||||||||||||||||||| |||||||||||  ||||| ||||||    
T  13697146 agtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccacacacaattttgacaagtgtcc 13697075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 92 - 163
Target Start/End: Complemental strand, 14945919 - 14945848
Alignment:
Q  92 tgagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgt 163  Q
    ||||||||||||||||||| |  ||| ||||||||||||||||||||| ||||||||||  || ||||||||    
T  14945919 tgagtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccacacacaaatgtaacatgtgt 14945848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 96 - 178
Target Start/End: Complemental strand, 36272840 - 36272758
Alignment:
Q  96 tagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtccccac 178  Q
    ||||||||||||||| |  ||| |||||||||||||||| |||| |||||||||||  ||||| ||||||  |||||||||||    
T  36272840 tagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtccttgtggtccccac 36272758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 93 - 178
Target Start/End: Original strand, 33299979 - 33300064
Alignment:
Q  93 gagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtccccac 178  Q
    |||||||||||||||||| |  ||| ||||||||||||| || |||| ||| | ||||| ||||||||||| || |||||||||||    
T  33299979 gagtagtgatacatagaccaccttaagtggcatgtaccatttatacacccatatacaattgtgacatgtgttcatgtggtccccac 33300064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 91 - 178
Target Start/End: Original strand, 5562934 - 5563021
Alignment:
Q  91 atgagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtccccac 178  Q
    |||||||||||||||||||||| |||| ||||||||||||| || ||||| || | | |||  ||||||||||| | |||||| ||||    
T  5562934 atgagtagtgatacatagactattttaggtggcatgtaccatttatacattcatatataattttgacatgtgtcgatgtggtctccac 5563021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 176
Target Start/End: Complemental strand, 42061412 - 42061330
Alignment:
Q  94 agtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtcccc 176  Q
    ||||||||||||||||  | |||  ||||||||||||||||||||| ||||| |||||  ||||| ||||||  |||||||||    
T  42061412 agtagtgatacatagagcactttgggtggcatgtaccacttgtacacccacatacaattttgacaagtgtccttgtggtcccc 42061330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 178
Target Start/End: Complemental strand, 24475883 - 24475798
Alignment:
Q  93 gagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtccccac 178  Q
    ||||| |||||||||||| |  ||| |||| ||||| ||||| |||| ||| ||||||| |||||||||||||| || ||||||||    
T  24475883 gagtaatgatacatagaccaccttaggtggtatgtatcacttatacacccatacacaattgtgacatgtgtccatgtagtccccac 24475798  T

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Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 164
Target Start/End: Original strand, 40095262 - 40095334
Alignment:
Q  92 tgagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtc 164  Q
    ||||||||||||||||||| |  |||  || ||||||||||||||||||||||| |||||  ||||| |||||    
T  40095262 tgagtagtgatacatagaccaccttagatgacatgtaccacttgtacatccacatacaattttgacaagtgtc 40095334  T

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Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 151
Target Start/End: Complemental strand, 14242697 - 14242639
Alignment:
Q  93 gagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaat 151  Q
    |||||||||||||||||| |  ||| |||| ||||||||| |||||| |||||||||||    
T  14242697 gagtagtgatacatagaccatcttaggtggtatgtaccacctgtacacccacacacaat 14242639  T

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Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 163
Target Start/End: Original strand, 25333173 - 25333214
Alignment:
Q  122 gcatgtaccacttgtacatccacacacaatggtgacatgtgt 163  Q
    |||||||||||||||||||| ||||||| | |||||||||||    
T  25333173 gcatgtaccacttgtacatcaacacacatttgtgacatgtgt 25333214  T

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Target: chr5 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 93 - 176
Target Start/End: Original strand, 13988247 - 13988330
Alignment:
Q  93 gagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtcccc 176  Q
    |||||||||||||||||| |  ||| ||||||||||||||||||||| |||||||||||  ||||| ||||||  |||||||||    
T  13988247 gagtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccacacacaattttgacaagtgtccttgtggtcccc 13988330  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 93 - 176
Target Start/End: Original strand, 36890377 - 36890460
Alignment:
Q  93 gagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtcccc 176  Q
    |||||||||||||||||| |  ||| ||||||||||||||||||||| |||||||||||  ||||| ||||||  |||||||||    
T  36890377 gagtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccacacacaattttgacaagtgtccttgtggtcccc 36890460  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 93 - 178
Target Start/End: Original strand, 15285329 - 15285414
Alignment:
Q  93 gagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtccccac 178  Q
    |||||||||||||||||| |  |||  ||||||||||||||| ||||  || ||||||| |||||||||||||| |||||||||||    
T  15285329 gagtagtgatacatagaccaccttagatggcatgtaccacttatacactcatacacaattgtgacatgtgtccatgtggtccccac 15285414  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 175
Target Start/End: Original strand, 12248299 - 12248355
Alignment:
Q  119 gtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtccc 175  Q
    ||||||| ||||||||||||||||||| | ||| |||||||||||||| ||||||||    
T  12248299 gtggcatataccacttgtacatccacatataattgtgacatgtgtccatgtggtccc 12248355  T

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Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 92 - 151
Target Start/End: Original strand, 11247191 - 11247250
Alignment:
Q  92 tgagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaat 151  Q
    |||||||||||||||||||||  |||  |||||| ||| |||||||||||||||||||||    
T  11247191 tgagtagtgatacatagactaccttagatggcatatactacttgtacatccacacacaat 11247250  T

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Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 166
Target Start/End: Complemental strand, 1447926 - 1447856
Alignment:
Q  96 tagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtcca 166  Q
    |||| ||| |||||| | |||| |||||||||||||||| ||||||||| |||||| ||||||| ||||||    
T  1447926 tagttatatatagacaactttaggtggcatgtaccacttatacatccacgcacaattgtgacatatgtcca 1447856  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 226
Target Start/End: Original strand, 20151478 - 20151516
Alignment:
Q  188 attttttgtctctcacacacgctcacatggggtggtata 226  Q
    |||| ||||||||||||||| ||||||||||||||||||    
T  20151478 atttattgtctctcacacactctcacatggggtggtata 20151516  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 173
Target Start/End: Complemental strand, 43100388 - 43100310
Alignment:
Q  95 gtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtc 173  Q
    ||||||||||||| || |  ||| |||| || ||||||||||||| ||||| | ||| |||||||||||||| ||||||    
T  43100388 gtagtgatacataaaccatcttaggtggtatataccacttgtacacccacatataattgtgacatgtgtccatgtggtc 43100310  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 91 - 178
Target Start/End: Original strand, 31741041 - 31741128
Alignment:
Q  91 atgagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtccccac 178  Q
    ||||||| |||||||||||| |  ||| |||||||||||||||| |||| ||| ||||||| |||||||||||| | ||| |||||||    
T  31741041 atgagtaatgatacatagaccaccttaggtggcatgtaccacttatacacccatacacaattgtgacatgtgtctatgtgctccccac 31741128  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 92 - 151
Target Start/End: Complemental strand, 46576425 - 46576366
Alignment:
Q  92 tgagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaat 151  Q
    ||||||||||||||||||| |  ||| ||||||||||||||||||||| |||||||||||    
T  46576425 tgagtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccacacacaat 46576366  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 92 - 165
Target Start/End: Original strand, 48460658 - 48460731
Alignment:
Q  92 tgagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtcc 165  Q
    ||||||||||||||||||| |  ||| ||||||||||||| ||||||||||||| |||||  ||||| ||||||    
T  48460658 tgagtagtgatacatagaccaccttaggtggcatgtaccatttgtacatccacatacaattttgacaagtgtcc 48460731  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 174
Target Start/End: Original strand, 43359001 - 43359053
Alignment:
Q  122 gcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtcc 174  Q
    |||||||| |||||||||||||| |||||| |||||| |||||||||||||||    
T  43359001 gcatgtactacttgtacatccactcacaattgtgacacgtgtccacgtggtcc 43359053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 91 - 178
Target Start/End: Complemental strand, 38755079 - 38754992
Alignment:
Q  91 atgagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtccccac 178  Q
    ||||||| |||||||||||| |  ||| ||||||||||||||||| ||| ||| ||| |||  ||||||||||||| ||| |||||||    
T  38755079 atgagtaatgatacatagaccaccttaggtggcatgtaccacttgaacacccatacataattatgacatgtgtccatgtgatccccac 38754992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 95 - 178
Target Start/End: Complemental strand, 42974558 - 42974475
Alignment:
Q  95 gtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtccccac 178  Q
    ||||||||||||| || |  ||| |||||||||||||||| |||| ||||| ||||| ||||||||||| ||  ||||||||||    
T  42974558 gtagtgatacataaaccaccttaggtggcatgtaccacttatacacccacatacaattgtgacatgtgttcatatggtccccac 42974475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 100 - 178
Target Start/End: Original strand, 11752604 - 11752682
Alignment:
Q  100 gatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtccccac 178  Q
    ||||||||||| |  ||| |||||||||| |||||||||| | ||| | ||| ||||||||||| ||||||||||||||    
T  11752604 gatacatagaccaccttaggtggcatgtatcacttgtacacctacatataattgtgacatgtgttcacgtggtccccac 11752682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 95 - 175
Target Start/End: Original strand, 28713679 - 28713759
Alignment:
Q  95 gtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtccc 175  Q
    ||||||||||||| || |  ||| ||||||| ||||||||||||| ||||| | ||| |||||||||||||| ||| ||||    
T  28713679 gtagtgatacataaaccaccttaggtggcatataccacttgtacacccacatataattgtgacatgtgtccatgtgttccc 28713759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 95 - 175
Target Start/End: Complemental strand, 38349639 - 38349559
Alignment:
Q  95 gtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtccc 175  Q
    ||||||||||||| || |  ||| ||||||| ||||||||||||| ||||| | ||| |||||||||||||| ||| ||||    
T  38349639 gtagtgatacataaaccatcttaggtggcatataccacttgtacacccacatataattgtgacatgtgtccatgtgttccc 38349559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 226
Target Start/End: Complemental strand, 38754975 - 38754937
Alignment:
Q  188 attttttgtctctcacacacgctcacatggggtggtata 226  Q
    |||| ||||||||||||||| ||||||||||||||||||    
T  38754975 atttattgtctctcacacactctcacatggggtggtata 38754937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 238
Target Start/End: Original strand, 33496608 - 33496653
Alignment:
Q  193 ttgtctctcacacacgctcacatggggtggtatattgtgtatatgg 238  Q
    ||||||||||||||| ||||||||| |||||||| ||||| |||||    
T  33496608 ttgtctctcacacactctcacatggagtggtataatgtgtgtatgg 33496653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 166
Target Start/End: Complemental strand, 47480194 - 47480122
Alignment:
Q  93 gagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtcca 166  Q
    ||||| |||||||||||| |  ||| ||||||||||||| ||||||| ||| | ||||| ||||||||||||||    
T  47480194 gagtaatgatacatagaccaccttaggtggcatgtaccatttgtacaccca-atacaattgtgacatgtgtcca 47480122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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