View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2215_high_4 (Length: 435)
Name: NF2215_high_4
Description: NF2215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2215_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 357; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 11 - 401
Target Start/End: Original strand, 51352185 - 51352579
Alignment:
| Q |
11 |
cagagaccgaaatatagatattttatgcaaatctgtaatattcattcatattcaatt-gtgagctaccccctctcaagtgtagactcaattgtctacaca |
109 |
Q |
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| T |
51352185 |
cagagatcgagatatagatattttatgcaaatccgtaatattcattcatattcaatttgtgagctaccccctctcaagtgtagactcaattgtctacaca |
51352284 |
T |
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| Q |
110 |
ttaaaattgcgtaaccccgttgtagttgttcaggaacttcatcaacgtcctcaggcctgtaacaacaacaacaaaatgaatcattcatccaatattaaaa |
209 |
Q |
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| T |
51352285 |
ttaaaattgcgtaaccccgttgtagttgttcaggaacttcatcaacgtcctcaggcctgtaacaacaacaacaaaatgaatcattcatccaatattaaaa |
51352384 |
T |
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| Q |
210 |
tttaaaaacgctgttactttacttacaaataatctcccatgaaaaa---gataaatgttaatacgggaagaggtgtagatgatagtcattggaacactat |
306 |
Q |
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| T |
51352385 |
tttaaaaacgctgttactttacttacaaataatctcccatgaaaaagatgataaatgttaatacgggaagaggtgtagatgatagtcattggaacactat |
51352484 |
T |
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| Q |
307 |
ctggtcgcagatgtctgcagcactgtaatatatacatgcctcgcataagcttcagtgaccaaatattgttccacggggacagatgctgccatgga |
401 |
Q |
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| T |
51352485 |
ctggtcgcagatgtctgcagcactgtaatacatacatgcctcgcataagcttcagtgaccaaatattgttccacggggacagatgctgccatgga |
51352579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 431
Target Start/End: Original strand, 51352603 - 51352636
Alignment:
| Q |
398 |
tggagtgagtgaggtgaatggagaaggatgtaat |
431 |
Q |
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| T |
51352603 |
tggagtgagtgaggtaaatggagaaggatgtaat |
51352636 |
T |
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