View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2215_high_6 (Length: 389)
Name: NF2215_high_6
Description: NF2215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2215_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 113 - 371
Target Start/End: Original strand, 49269145 - 49269404
Alignment:
| Q |
113 |
cataataaggttcaagatcattaccatcaccaacagccataactttagttccatcggtatctgtgaaagttcgaacaggagcacataaagcaccaggaac |
212 |
Q |
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| T |
49269145 |
cataataaggttcaagatcattaccatcaccaacagccataactttagttccatcggtatctgtgaaagttcgaacaggagcacataaagcaccaggaac |
49269244 |
T |
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| Q |
213 |
agaaggacagaacttaaagatatagattggaatcccagtgtctccttcaagcttctcaat-ttgaacttactaacaacatccccagctacaccaccagtg |
311 |
Q |
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| T |
49269245 |
agaaggacagaacttaaagatatagattggaatcccagtgtctccttcaagcttctcaatcttgaacttactaacaacatccccagctacaccaccagtg |
49269344 |
T |
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| Q |
312 |
ctcaaaaaccagaacccagatccctcttttgaaagcttcaacacttttgactggttgcat |
371 |
Q |
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| T |
49269345 |
ctcaaaaaccagaacccagatccctcttttgaaagcttcaacacttttgactggttgcat |
49269404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 134 - 360
Target Start/End: Original strand, 49271614 - 49271841
Alignment:
| Q |
134 |
taccatcaccaacagccataactttagttccatcggtatctgtgaaagttcgaacaggagcacataaagcaccaggaacagaaggacagaacttaaagat |
233 |
Q |
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| T |
49271614 |
taccatcaccaacagccataactttagttccatcagtatctacaaaagttccaacaggagcacaaagaacaccaggaacagagggacagaacttaaagct |
49271713 |
T |
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| Q |
234 |
atagattggaatcccagtgtctccttcaagcttctcaat-ttgaacttactaacaacatccccagctacaccaccagtgctcaaaaaccagaacccagat |
332 |
Q |
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| T |
49271714 |
atatatctcataagcatgttcacctgcaagcctctcaatcttgaacttgctaacaagatccccagctgcaccaccagtgctcacaaaccaaaacccagac |
49271813 |
T |
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| Q |
333 |
ccctcttttgaaagcttcaacacttttg |
360 |
Q |
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| T |
49271814 |
ccaacctttaaaagcctccacacttttg |
49271841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 134 - 222
Target Start/End: Original strand, 49277531 - 49277619
Alignment:
| Q |
134 |
taccatcaccaacagccataactttagttccatcggtatctgtgaaagttcgaacaggagcacataaagcaccaggaacagaaggacag |
222 |
Q |
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||||| |||||| ||||||||||||||||||||| |||||| ||||||| |||||||||||| | || ||||||||||||||||||| |
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| T |
49277531 |
taccagcaccaagagccataactttagttccatcagtatctacaaaagttccaacaggagcacaaagagtaccaggaacagaaggacag |
49277619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 13 - 91
Target Start/End: Original strand, 49268984 - 49269054
Alignment:
| Q |
13 |
attctcaaaggaaagtagcaaatcttaaatcagagagagacagggtactctgtttgtccacttcgatgacttatttata |
91 |
Q |
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| T |
49268984 |
attctcaaaggaaagtagcaaatcttaaatcag--------agggtactctgtttgtccacttcggtggcttatttata |
49269054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 88 - 116
Target Start/End: Complemental strand, 41309304 - 41309276
Alignment:
| Q |
88 |
tatagagttgtgttatttgaacatccata |
116 |
Q |
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| T |
41309304 |
tatagagttgtgttatttgaacatccata |
41309276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 116
Target Start/End: Complemental strand, 1156912 - 1156879
Alignment:
| Q |
83 |
ttatttatagagttgtgttatttgaacatccata |
116 |
Q |
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|||||| ||||||||||||||||||||||||||| |
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| T |
1156912 |
ttatttttagagttgtgttatttgaacatccata |
1156879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 84 - 116
Target Start/End: Complemental strand, 41195775 - 41195743
Alignment:
| Q |
84 |
tatttatagagttgtgttatttgaacatccata |
116 |
Q |
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|||||||||||||||||||||||||||| |||| |
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| T |
41195775 |
tatttatagagttgtgttatttgaacattcata |
41195743 |
T |
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