View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2215_high_7 (Length: 360)
Name: NF2215_high_7
Description: NF2215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2215_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 6 - 346
Target Start/End: Original strand, 20668867 - 20669211
Alignment:
| Q |
6 |
accaccaccagagcacaaatctcataggcaactgtcaaccttcctattatgcggctaacttccgcctcttcaaaaaataaatcgaaatctgcaagatatt |
105 |
Q |
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| T |
20668867 |
accaccaccagagcacaaatctcataggcaactgtcgaccttcctattatgcggctaacttcggcctcttcaagaaataaaccgaaatctgcaagatatt |
20668966 |
T |
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| Q |
106 |
caaaagcatatctaaaacatatttaaaattatgtcattttagtcattgctattaagatgttagagacaaagtcgttagttatatttgaactttgtaaaag |
205 |
Q |
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| T |
20668967 |
caaaa-----------acatatttaaaaatatgtcattttagtcattgctattaagatgttagagacaaagtcgttagttatatttgaactttgtaaaag |
20669055 |
T |
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| Q |
206 |
gaaatgaagaagaaaaaattggagaatctcttaacaccttctagtaagaaatataggaaataataaaaacc---------------tggtctctccaaca |
290 |
Q |
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| T |
20669056 |
gaaatgaagaagaaaaaattggagaatctcttaacaccctctagtaagaaatataggaaataataaaaaccttgtaataattaacattgtctctccaaca |
20669155 |
T |
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| Q |
291 |
cgggacgcaactgtcgtccttcctattatgcggttcaaaaaatgaactcaaacctg |
346 |
Q |
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| T |
20669156 |
cgggacacaactgtcgtccttcctattatgcggttcaaaaaatgaactcaaacctg |
20669211 |
T |
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