View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2215_low_1 (Length: 1231)
Name: NF2215_low_1
Description: NF2215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2215_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 1059; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 1059; E-Value: 0
Query Start/End: Original strand, 1 - 1222
Target Start/End: Original strand, 8135106 - 8136326
Alignment:
| Q |
1 |
tatatgtgtcgacgtgtcctatgtagctccgaaactttagattgaaaacgtgtctagcatccgatatgacaccaaaacatgttgttacattcaattagtt |
100 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8135106 |
tatacgtgtcgacgtgtcctatgtagctccgaaactttagattgaagacgtgtctagcatccgatatgacaccaaaacatgttgttacattcaattagtt |
8135205 |
T |
|
| Q |
101 |
ctatttttaatattacattgtcggtatgttagtatcgtgtaccgcgtgatgaatatttcacaatcttctgcagttcatctttcttgtctaatatcattga |
200 |
Q |
| |
|
||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8135206 |
ctatttttaatattatagtgtcggcatgttagtatcgtgtaccgcgtgatgaatatttcacaatcttctgcagttcatctttcttgtctaatatcattga |
8135305 |
T |
|
| Q |
201 |
tttgattagatatagtaagtcctgacttattgataaaacatgcatgtgagtgctgtaggcctagtgtgccaattgcaacagggtgatttttataatgttg |
300 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8135306 |
tt-gattagatatagtaagtcctgacttattgataaaacatgcatgtgagtgctgtaggcctagtgtgccaattgcaacagggtgatttttataatgttg |
8135404 |
T |
|
| Q |
301 |
gaatgtgatgattttgtttgtatgggaagatatctatcatctaatgattgtaattatagacctacatgctcctctgtctgtagctgcattgcatgctcca |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8135405 |
gaatgtgatgattttgtttgtatgggaagatatctatcatctaatgattgtaattatagacctacatgctcctctgtctgtagctgcattgcatgctcca |
8135504 |
T |
|
| Q |
401 |
gttcccaaacctttcaaaatcaannnnnnnnaatgttttaccttagcatcatatcttaacttagtgcatataccctatttatctcaaaatttaacatgta |
500 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
8135505 |
gttcccaaacctttcaaaatcaattttttttaatgttttaccttagcatcatatcttaacttagtgcatataccctatt-atctcaaaatttaacatgta |
8135603 |
T |
|
| Q |
501 |
cttacctttctaattgatccagattgttgtggattttactgcttcttggtgtggaccatgccgtttcattgcaccattccttgctgagttggccaacaag |
600 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
8135604 |
cttacctctctaattgatccagattgttgtggattttactgcttcttggtgtggaccatgccgtttcattgcaccattccttgctgagttggccaagaag |
8135703 |
T |
|
| Q |
601 |
tatacaaatgccatattccttaaggtggatgtggacgaattgaaggtaacacattctaattaatttgcacaagagtttaatgaggatgtaatgtagttat |
700 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
8135704 |
tatacaaatgccatattccttaaggtggatgtggacgaattgaaggtaacacattctaattaatttgcacaagagtttaatgaggatgtaatgtcgttat |
8135803 |
T |
|
| Q |
701 |
aaaactcatcatgttgtcacataaacctactttgtagccccatttgaaaaatgaccgtaaaatactaaagatttttattggacgtcagtgtaaaactttt |
800 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8135804 |
aaaactaatcatgttgtcacataaacctactttgtagccccatttgaaaaatgaccgtaaaatactaaagatttttattggacgtcagtgtaaaactttt |
8135903 |
T |
|
| Q |
801 |
tgcactctgcctnnnnnnncaggaaattcgataaatagatattaatcatgaataatttgttgattgaattgcagtctgttgctcaagattgggctattga |
900 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8135904 |
tgcactctgcctaaaaaaacaggaaattcgataaatagatattaatcatgaataatttgttgattgaattgcagtctgttgctcaagattgggctattga |
8136003 |
T |
|
| Q |
901 |
agccatgccaacgtttgtgtttgtgaaagaaggaaaaattttgggcaaagtggtaggagcaaagaaagatgagctgacacagacaatagagaaacatgtg |
1000 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8136004 |
agccatgccaacgtttgtttttgtgaaagaaggaacaattttgggcaaagtggtaggagcaaagaaagatgagctgacacagacaatagagaaacatgtg |
8136103 |
T |
|
| Q |
1001 |
gcatcagccaatgtttaattttgttggtggtattgttggcttcatctacaatgacataataatatttactgtgatgccatctttattttcattattatta |
1100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8136104 |
gcatcagccaatgtttaattttgttggtggtattgttggcttcatctacaatgacataataatatttactgtgatgccatctttattttcattattatta |
8136203 |
T |
|
| Q |
1101 |
tcttgtagtgaacg-nnnnnnnnnnnnnnnnngcaccttacaactttatatagatggtgacgtatcgtctatgacttccaagactttattccttcttgtc |
1199 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8136204 |
tcttgtagtgaacgttttttttttctttttttgcaccttacaactttatatagatggtgacgtatcgtctatgacttccaagactttattccttcttgtc |
8136303 |
T |
|
| Q |
1200 |
ttaataatggtggatgatgatgt |
1222 |
Q |
| |
|
||||||||||||||||||||||| |
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|
| T |
8136304 |
ttaataatggtggatgatgatgt |
8136326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 521 - 572
Target Start/End: Complemental strand, 7353392 - 7353341
Alignment:
| Q |
521 |
agattgttgtggattttactgcttcttggtgtggaccatgccgtttcattgc |
572 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||| ||||||||||| ||||| |
|
|
| T |
7353392 |
agattgtggtggattttactgcttcatggtgtggtccatgccgttttattgc |
7353341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000007; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 520 - 572
Target Start/End: Complemental strand, 52667065 - 52667013
Alignment:
| Q |
520 |
cagattgttgtggattttactgcttcttggtgtggaccatgccgtttcattgc |
572 |
Q |
| |
|
|||||||| || ||||| ||||||||||||||||| || |||||||||||||| |
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|
| T |
52667065 |
cagattgtagttgatttcactgcttcttggtgtggcccgtgccgtttcattgc |
52667013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 520 - 578
Target Start/End: Complemental strand, 52663838 - 52663780
Alignment:
| Q |
520 |
cagattgttgtggattttactgcttcttggtgtggaccatgccgtttcattgcaccatt |
578 |
Q |
| |
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|||||||| || ||| |||||||||||| ||||| ||||||||||||||||| ||||| |
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| T |
52663838 |
cagattgtagttgatagtactgcttcttgctgtggtccatgccgtttcattgccccatt |
52663780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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