View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2215_low_11 (Length: 293)
Name: NF2215_low_11
Description: NF2215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2215_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 18 - 275
Target Start/End: Complemental strand, 31998735 - 31998478
Alignment:
| Q |
18 |
agaatacaatttaccacaatttctagcaattcctacaaaactatgagcaactctattgttacatctcttaacataaattaaactaacattagacatactg |
117 |
Q |
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| T |
31998735 |
agaatacaatttaccacaatttctagcaattcctacaaaactatgagcaactctattgttacatcacttaacataaattaaactaacattagacatactg |
31998636 |
T |
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| Q |
118 |
aacaacaattcatgacagtcagacacgacaatatccttgtactccagcttagttttcccaagcacgcagttcacaaacatttggcatattttgtgtagac |
217 |
Q |
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| T |
31998635 |
aacaacaattcatgacagtcaaacacgacaatatccttgtactccagcttagttttcccaagcacgcagttcacaaacatttggcatattttgtgtagac |
31998536 |
T |
|
| Q |
218 |
atccaccggagacaccaacgcagtcccataatgtccggcaaagctggagcctttgtca |
275 |
Q |
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| T |
31998535 |
atccaccggagacaccaacgcagtcccataatgtccggcaaaactggagcctttgtca |
31998478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 29 - 138
Target Start/End: Complemental strand, 42613200 - 42613096
Alignment:
| Q |
29 |
taccacaatttctagcaattcctacaaaactatgagcaactctattgttacatctcttaacataaattaaactaacattagacatactgaacaacaattc |
128 |
Q |
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||||||| ||||||||||||||||| || | ||||||| ||||| |||||||||||||| || |||||||||||||||||||||||| | |||||| |
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| T |
42613200 |
taccacagtttctagcaattcctaccaacc-atgagcagctctactgttacatctctta----aacataaactaacattagacatactgaatatcaattc |
42613106 |
T |
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| Q |
129 |
atgacagtca |
138 |
Q |
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| T |
42613105 |
aagtcagtca |
42613096 |
T |
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