View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2215_low_13 (Length: 265)
Name: NF2215_low_13
Description: NF2215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2215_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 46934874 - 46934616
Alignment:
| Q |
1 |
ttatagcagtaacatttgtcacatgaatacaattattttgactcaattattacacctcattgaaaacaaggaaattaagtgataaacaatttaataaatc |
100 |
Q |
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| T |
46934874 |
ttatagcggtaacatttgtcacatgaatacaattattttgactcaattattacacctcattgaaaacaaggaaattaagtgataaacaatttaataaatc |
46934775 |
T |
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| Q |
101 |
ttgagaggaaaaagaaaaaggactatctaatgtattagacatacaaaagaatgacactttatttgcttattcggacaggaacaactcgaaggggttgtgc |
200 |
Q |
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| T |
46934774 |
ttgagaggaaaaagaaaaaggactatctaatgtattagacatgcaaaagaatgacactttatttgcttattcggacaggaacaactcgaaggggttgtgc |
46934675 |
T |
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| Q |
201 |
cttttgcaaggtaatgccgaatttatcattcatgtccatatcttctggtttcatctcac |
259 |
Q |
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| T |
46934674 |
cttttgcaaggtaatgccgaatttatcattcatgtccatatcttctggtttcatgtcac |
46934616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 177 - 254
Target Start/End: Original strand, 11106244 - 11106321
Alignment:
| Q |
177 |
aggaacaactcgaaggggttgtgccttttgcaaggtaatgccgaatttatcattcatgtccatatcttctggtttcat |
254 |
Q |
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| T |
11106244 |
aggaacaattcgaaggggttgagccttttgtagagtaatcccaaatttatcatccatgttcatatcttctggtttcat |
11106321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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