View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2215_low_14 (Length: 263)
Name: NF2215_low_14
Description: NF2215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2215_low_14 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 10 - 245
Target Start/End: Complemental strand, 8719986 - 8719751
Alignment:
| Q |
10 |
attatactataaattttatgatggtactaagtatatgatggtactaagtttactttattgttcaataattttgacaggtcaatattttgactcatataag |
109 |
Q |
| |
|
|||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8719986 |
attatattataaattttatgatgttactaagtatatgatggtactaagtttactttattgttcaataattttgacaggtcaatattttgactcatataag |
8719887 |
T |
|
| Q |
110 |
tgaggtgaaattaacagatgaacaactttatgctattnnnnnnnnnnnnngcgcacataagactcaagataagaaagaaggtcttgttcaagataatgga |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8719886 |
tgaggtgaaattaacagatgaacaactttatgctattaaaaaaataaaaagcgcacataagactcaagataagaaagaaggtcttgttcaagataatgga |
8719787 |
T |
|
| Q |
210 |
ggtcattttgagatcaatggaaagctatttccaaat |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
8719786 |
ggtcattttgagatcaatggaaagctatttccaaat |
8719751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 38 - 146
Target Start/End: Complemental strand, 8674897 - 8674789
Alignment:
| Q |
38 |
aagtatatgatggtactaagtttactttattgttcaataattttgacaggtcaatattttgactcatataagtgaggtgaaattaacagatgaacaactt |
137 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||| || |
|
|
| T |
8674897 |
aagtataagatggtactaagtttactttattgttcaataattttgacaggttaatattttgactcatataactgaggtgaaattaacagatgagcaaatt |
8674798 |
T |
|
| Q |
138 |
tatgctatt |
146 |
Q |
| |
|
||||||||| |
|
|
| T |
8674797 |
tatgctatt |
8674789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 47 - 146
Target Start/End: Complemental strand, 8592076 - 8591977
Alignment:
| Q |
47 |
atggtactaagtttactttattgttcaataattttgacaggtcaatattttgactcatataagtgaggtgaaattaacagatgaacaactttatgctatt |
146 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |||||||||| || ||| |||||||||||| ||||||||||||||| || || ||||||| ||||||| |
|
|
| T |
8592076 |
atggtactaaatttactttattgttcaataactttgacaggtaaacattctgactcatataactgaggtgaaattaactgaagatcaactttgtgctatt |
8591977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 183 - 245
Target Start/End: Complemental strand, 8673520 - 8673458
Alignment:
| Q |
183 |
aaagaaggtcttgttcaagataatggaggtcattttgagatcaatggaaagctatttccaaat |
245 |
Q |
| |
|
||||| ||||||||||||||||||||||||| |||| ||||||| ||||||||||||| |||| |
|
|
| T |
8673520 |
aaagagggtcttgttcaagataatggaggtccttttaagatcaaaggaaagctatttctaaat |
8673458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 88 - 146
Target Start/End: Original strand, 23437893 - 23437951
Alignment:
| Q |
88 |
tcaatattttgactcatataagtgaggtgaaattaacagatgaacaactttatgctatt |
146 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23437893 |
tcaatattttgactcatataactgaggtgaaattaacagatgaacaactttatgctatt |
23437951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 181 - 245
Target Start/End: Original strand, 23439372 - 23439436
Alignment:
| Q |
181 |
agaaagaaggtcttgttcaagataatggaggtcattttgagatcaatggaaagctatttccaaat |
245 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |||||||||||| | |||||||||||||||| |
|
|
| T |
23439372 |
agaaagagggtcttgttcaagataatggaggtccttttgagatcaaagcaaagctatttccaaat |
23439436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 123
Target Start/End: Complemental strand, 5116802 - 5116746
Alignment:
| Q |
67 |
ttgttcaataattttgacaggtcaatattttgactcatataagtgaggtgaaattaa |
123 |
Q |
| |
|
|||||||||||| || | |||| |||||||||||||||| ||||||||| ||||||| |
|
|
| T |
5116802 |
ttgttcaataatgttcataggtgaatattttgactcatacaagtgaggtaaaattaa |
5116746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University