View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2215_low_16 (Length: 250)
Name: NF2215_low_16
Description: NF2215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2215_low_16 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 5 - 240
Target Start/End: Complemental strand, 43534483 - 43534248
Alignment:
| Q |
5 |
ttttcatacatactaatcggttaattcttaattcatgttgttgaagcatattaattgctggcttagttatttactcataacagtctcatagctgtagcta |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
43534483 |
ttttcatacatactaatcggttaattcttagttcatgttgttgaagcatattaattgctggcttagttatttactgataacagtctcatagctgtagcta |
43534384 |
T |
|
| Q |
105 |
tttgttgtcttgagaactgttattgcaagtctcaaaactcaaatactcactggatagaatcatgtggatttatggctatacccctttaatagatttgaca |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43534383 |
tttgttgtcttgagaactgttattgcaagtctcaaaactcaaatactcactggatagaatcatgtggatttatggctatacccctttaatagatttgaca |
43534284 |
T |
|
| Q |
205 |
tcaaatgtcaactagactttctgttatgaacctatg |
240 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| |
|
|
| T |
43534283 |
tcaaatgtcaactagactttctgttatgaacttatg |
43534248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University