View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2215_low_17 (Length: 250)
Name: NF2215_low_17
Description: NF2215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2215_low_17 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 12 - 250
Target Start/End: Original strand, 1180313 - 1180551
Alignment:
| Q |
12 |
aagaatgctaatgtttcgtgacaaaagtttggctatcaaaaaatttaggctcaatttgaatggttttgtagttaggtacatgtcaaaggatgttgataat |
111 |
Q |
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| T |
1180313 |
aagaatgctaatgtttcgtgaccaaagtttggctatcaaaaaatttaggctcaatttgaatggttttgtagttaggtacatgtcaaaggatgttgataat |
1180412 |
T |
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| Q |
112 |
tggttgaaattggcttgtgaatgtggtgttgaggtaatacagtattcccaacagatactggaaggtcaggagcaataccatgtcttgccaatcagtgtaa |
211 |
Q |
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| T |
1180413 |
tggttgaaattggcttgtgaatgtggtgttgaggtaatacagtattcccaacagatactggaaggtcaggagcaataccatgtcttgccaatcagtgtaa |
1180512 |
T |
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| Q |
212 |
ttgaagccaaatcacttacaaaattggtgttgcagggga |
250 |
Q |
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| T |
1180513 |
ttgaagccaaatcacttacaaagttggtgttgcagggga |
1180551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 12 - 162
Target Start/End: Original strand, 1196655 - 1196805
Alignment:
| Q |
12 |
aagaatgctaatgtttcgtgacaaaagtttggctatcaaaaaatttaggctcaatttgaatggttttgtagttaggtacatgtcaaaggatgttgataat |
111 |
Q |
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| T |
1196655 |
aagaatgctaatgtttcgtgaccaaagtttgcctatcaaagaatttaagatcgatttaaacggttttgtacctaagtacatgtcaaaggatgttgatatt |
1196754 |
T |
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| Q |
112 |
tggttgaaattggcttgtgaatgtggtgttgaggtaatacagtattcccaa |
162 |
Q |
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| T |
1196755 |
tggttgaaattggcttgtgaatgtggtgttgaggtaatagagtattcccaa |
1196805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 195 - 249
Target Start/End: Original strand, 1185861 - 1185915
Alignment:
| Q |
195 |
cttgccaatcagtgtaattgaagccaaatcacttacaaaattggtgttgcagggg |
249 |
Q |
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| T |
1185861 |
cttgccaatgtgtgtcattgaagccaaatcacttacaaagttggtgttggagggg |
1185915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 143
Target Start/End: Original strand, 5203468 - 5203523
Alignment:
| Q |
88 |
tacatgtcaaaggatgttgataattggttgaaattggcttgtgaatgtggtgttga |
143 |
Q |
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| T |
5203468 |
tacatgtcaaaagatgttgatcattggttgaagttagcaagtgaatgtggtgttga |
5203523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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