View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2215_low_21 (Length: 239)
Name: NF2215_low_21
Description: NF2215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2215_low_21 |
 | |
|
| [»] chr6 (2 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 19 - 239
Target Start/End: Complemental strand, 1180824 - 1180604
Alignment:
| Q |
19 |
ttgaagcatcaatagaaacttcttgtattgctgaaacatcaacattcttgagattttgtagtccactaatgctcacatactccatataccttgtgccacc |
118 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1180824 |
ttgaagcatcaatagaaacatcttgtattgctgaaacatcaacactcttgagattttgtagaccactaatgctcacatactccatataccttgtgccacc |
1180725 |
T |
|
| Q |
119 |
accagaacttaacacctcacataaatccaaagttatatattcaatcaaaggacaaaaagagatgagttggctaattgcatgttcatctccaaaaagtaca |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
1180724 |
accagaacttaacacctcacataaatccaaagttatatattcaatcaaaggacaaaaagagatgagttggttaattgcatgttcatctccaaaaagtaca |
1180625 |
T |
|
| Q |
219 |
cgcgttagtgacaattccctc |
239 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
1180624 |
cgcgttagtgacaattccctc |
1180604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 24 - 239
Target Start/End: Complemental strand, 1186187 - 1185969
Alignment:
| Q |
24 |
gcatcaatagaaacttcttgtattgctgaaacatcaacattcttgagattttgtagtccactaatgctcacatactccata---taccttgtgccaccac |
120 |
Q |
| |
|
|||||||||||||| | || |||| |||||||||||||| ||||||| |||||||| |||||||| || | | ||| ||| | |||||||||||||| |
|
|
| T |
1186187 |
gcatcaatagaaacatattttattcctgaaacatcaacactcttgagcttttgtagaccactaattcttaaagacttcattggctcccttgtgccaccac |
1186088 |
T |
|
| Q |
121 |
cagaacttaacacctcacataaatccaaagttatatattcaatcaaaggacaaaaagagatgagttggctaattgcatgttcatctccaaaaagtacacg |
220 |
Q |
| |
|
||||||||| ||||| ||| | |||||||||||||||||||||||| |||||||||||||||| ||| | ||||||||||||||| | ||||||||| | |
|
|
| T |
1186087 |
cagaacttagcaccttacaggagtccaaagttatatattcaatcaaatgacaaaaagagatgaggtggttgattgcatgttcatctaccaaaagtacatg |
1185988 |
T |
|
| Q |
221 |
cgttagtgacaattccctc |
239 |
Q |
| |
|
| ||||||||||||||||| |
|
|
| T |
1185987 |
ccttagtgacaattccctc |
1185969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 207
Target Start/End: Complemental strand, 5203791 - 5203730
Alignment:
| Q |
146 |
caaagttatatattcaatcaaaggacaaaaagagatgagttggctaattgcatgttcatctc |
207 |
Q |
| |
|
||||||||||| |||||||||||||||| |||| ||||| || ||||||||||||||||| |
|
|
| T |
5203791 |
caaagttatatgttcaatcaaaggacaacaagaaatgagatgctcaattgcatgttcatctc |
5203730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 206
Target Start/End: Original strand, 8553025 - 8553085
Alignment:
| Q |
146 |
caaagttatatattcaatcaaaggacaaaaagagatgagttggctaattgcatgttcatct |
206 |
Q |
| |
|
||||||||||| |||||| ||||||||| |||| ||||| || |||||||||||||||| |
|
|
| T |
8553025 |
caaagttatatgttcaatgaaaggacaacaagaaatgagatgctcaattgcatgttcatct |
8553085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 214
Target Start/End: Complemental strand, 49610710 - 49610642
Alignment:
| Q |
146 |
caaagttatatattcaatcaaaggacaaaaagagatgagttggctaattgcatgttcatctccaaaaag |
214 |
Q |
| |
|
||||||||||| |||||||||||||||| |||| ||||| || ||||||||| |||| ||| ||||| |
|
|
| T |
49610710 |
caaagttatatgttcaatcaaaggacaacaagaaatgagatgttcaattgcatgctcatttcccaaaag |
49610642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University