View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2215_low_22 (Length: 239)
Name: NF2215_low_22
Description: NF2215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2215_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 39924709 - 39924930
Alignment:
| Q |
1 |
ttgatattttatattttgtgcaagaagtgtaaggagtagtgaaaaagttgtgcaatatctnnnnnnnnnnnnctgaatggcctcacctcaaaactttgta |
100 |
Q |
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| T |
39924709 |
ttgatattttatattttgtgcaagaagtgtaaggagtagtgaaaaagttgtgcaatatctaaaatacaaaaactgaatggcctcacctcaaaactttgta |
39924808 |
T |
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| Q |
101 |
tccaagctaacagcactggttgtggatgacaatataattaaccgaaagattcatcaaaagatgttgaataaatttggagtcaaaagtcaaggtgtggaga |
200 |
Q |
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| T |
39924809 |
tccaagctaacagcactggttgtggatgacaatataattaaccgaaagattcatcaaaagatgttgaataaatttggagtcaaaagtcaaggtgtggaga |
39924908 |
T |
|
| Q |
201 |
atggaaaagaagcagtggacat |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
39924909 |
atggaaaagaagcagtggacat |
39924930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 129
Target Start/End: Complemental strand, 26569647 - 26569605
Alignment:
| Q |
87 |
ctcaaaactttgtatccaagctaacagcactggttgtggatga |
129 |
Q |
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|||||||||||| ||||||| |||||||||| ||||||||||| |
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| T |
26569647 |
ctcaaaactttgcatccaagttaacagcacttgttgtggatga |
26569605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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