View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2215_low_4 (Length: 615)

Name: NF2215_low_4
Description: NF2215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2215_low_4
NF2215_low_4
[»] chr5 (6 HSPs)
chr5 (412-590)||(40599404-40599582)
chr5 (182-321)||(40599708-40599845)
chr5 (182-321)||(42268611-42268749)
chr5 (107-155)||(40599872-40599920)
chr5 (107-152)||(40681012-40681057)
chr5 (114-154)||(12156496-12156536)
[»] chr7 (3 HSPs)
chr7 (182-317)||(43032282-43032415)
chr7 (182-321)||(24718209-24718346)
chr7 (107-155)||(43032445-43032493)
[»] chr3 (1 HSPs)
chr3 (182-317)||(31699417-31699551)
[»] chr1 (3 HSPs)
chr1 (245-321)||(2077225-2077300)
chr1 (107-152)||(15496015-15496060)
chr1 (107-157)||(2077362-2077412)
[»] chr2 (2 HSPs)
chr2 (182-311)||(9910838-9910966)
chr2 (107-157)||(9910758-9910808)
[»] chr8 (1 HSPs)
chr8 (108-157)||(23635972-23636021)
[»] scaffold0092 (1 HSPs)
scaffold0092 (107-155)||(23312-23360)


Alignment Details
Target: chr5 (Bit Score: 179; Significance: 3e-96; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 412 - 590
Target Start/End: Complemental strand, 40599582 - 40599404
Alignment:
Q  412 tttatatgcccacagattttccgaaccaagattaataattgaagtaggaccccattctatcttctctgtattttcgttgaagaaacaaaccaggttgact 511  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40599582 tttatatgcccacagattttccgaaccaagattaataattgaagtaggaccccattctatcttctctgtattttcgttgaagaaacaaaccaggttgact 40599483  T
Q  512 acttgtttctttcttgtaagttttggtgagttcaagtttgaatcagcttcttatttataaatgaagcttcctatgaaat 590  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40599482 acttgtttctttcttgtaagttttggtgagttcaagtttgaatcagcttcttatttataaatgaagcttcctatgaaat 40599404  T

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Target: chr5; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 182 - 321
Target Start/End: Complemental strand, 40599845 - 40599708
Alignment:
Q  182 ccaactcacaagcttctcaacatcaacaccaaaatatcaccaccatgcnnnnnnnngacaccattacattccaactaccaacccaagtgcaaaaacctta 281  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||    
T  40599845 ccaactcacaagcttctcaacatcaacaccaaaatatcaccaccatgcaaaaaa--gacaccattacattccaactaccaacccaagtgcaaaaacctta 40599748  T
Q  282 tgtaaccaacactaataaccacccacatcatcgttaactc 321  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  40599747 tgtaaccaacactaataaccacccacatcatcgttgactc 40599708  T

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Target: chr5; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 182 - 321
Target Start/End: Complemental strand, 42268749 - 42268611
Alignment:
Q  182 ccaactcacaagcttctcaacatcaacaccaaaatatcaccaccatgcnnnnnnnngacaccatt-acattccaactaccaacccaagtgcaaaaacctt 280  Q
    |||||||||||| |||| | ||| ||||||||||||||||||||| ||        ||||||||| || || ||||| |||||||||   |||||||  |    
T  42268749 ccaactcacaagtttctaatcattaacaccaaaatatcaccaccacgcaaaaaa--gacaccatttacgtttcaactcccaacccaacaacaaaaacaat 42268652  T
Q  281 atgtaaccaacactaataaccacccacatcatcgttaactc 321  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  42268651 atgtaaccaacaccaataaccacccacatcatcgttaactc 42268611  T

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Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 107 - 155
Target Start/End: Complemental strand, 40599920 - 40599872
Alignment:
Q  107 gacctagtatcaacaccaccgtgaaaaccaccacgaaacaccacaaacg 155  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  40599920 gacctagtatcaacaccaccgtgaaaaccaccacgaagcaccacaaacg 40599872  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 152
Target Start/End: Original strand, 40681012 - 40681057
Alignment:
Q  107 gacctagtatcaacaccaccgtgaaaaccaccacgaaacaccacaa 152  Q
    |||| ||||||||||||||| | |||||||||| ||||||||||||    
T  40681012 gaccaagtatcaacaccaccataaaaaccaccatgaaacaccacaa 40681057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 114 - 154
Target Start/End: Original strand, 12156496 - 12156536
Alignment:
Q  114 tatcaacaccaccgtgaaaaccaccacgaaacaccacaaac 154  Q
    ||||||||||||| || ||||||||||||| ||||||||||    
T  12156496 tatcaacaccaccatggaaaccaccacgaaccaccacaaac 12156536  T

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Target: chr7 (Bit Score: 57; Significance: 2e-23; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 182 - 317
Target Start/End: Complemental strand, 43032415 - 43032282
Alignment:
Q  182 ccaactcacaagcttctcaacatcaacaccaaaatatcaccaccatgcnnnnnnnngacaccatt-acattccaactaccaacccaagtgcaaaaacctt 280  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||| ||         |||||||| |||||| |||| |||||||||  |||||| ||||    
T  43032415 ccaacacacaagcttctcatcatcaacaccaaaatatcaccaccacgcaaaaaat--acaccatttacattctaactcccaacccaacagcaaaa-cctt 43032319  T
Q  281 atgtaaccaacactaataaccacccacatcatcgtta 317  Q
    ||||||||||||| |||||||||||||||||||||||    
T  43032318 atgtaaccaacaccaataaccacccacatcatcgtta 43032282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 182 - 321
Target Start/End: Original strand, 24718209 - 24718346
Alignment:
Q  182 ccaactcacaagcttctcaacatcaacaccaaaatatcaccaccatgcnnnnnnnngacaccatt-acattccaactaccaacccaagtgcaaaaacctt 280  Q
    ||||||||||||||||| | ||| || ||||||||||||||||||  |        ||||||||| || || ||||| |||||||||   |||||||       
T  24718209 ccaactcacaagcttctaatcattaataccaaaatatcaccacca--cacaaaaaagacaccatttacgtttcaactcccaacccaacaacaaaaacaa- 24718305  T
Q  281 atgtaaccaacactaataaccacccacatcatcgttaactc 321  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  24718306 atgtaaccaacaccaataaccacccacatcatcgttaactc 24718346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 107 - 155
Target Start/End: Complemental strand, 43032493 - 43032445
Alignment:
Q  107 gacctagtatcaacaccaccgtgaaaaccaccacgaaacaccacaaacg 155  Q
    |||| ||||||||||||||| |  ||||||||||||| |||||||||||    
T  43032493 gaccgagtatcaacaccaccatataaaccaccacgaagcaccacaaacg 43032445  T

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Target: chr3 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 182 - 317
Target Start/End: Original strand, 31699417 - 31699551
Alignment:
Q  182 ccaactcacaagcttctcaacatcaacaccaaaatatcaccaccatgcnnnnnnnngacacca-ttacattccaactaccaacccaagtgcaaaaacctt 280  Q
    ||||||||||||||||| | |||||||||||||||||||||||||| |        ||||||| |||| |||||||| |||||||||   ||||||||||    
T  31699417 ccaactcacaagcttctaatcatcaacaccaaaatatcaccaccatac--aaaaaagacaccatttacgttccaactcccaacccaacaacaaaaacctt 31699514  T
Q  281 atgtaaccaacactaataaccacccacatcatcgtta 317  Q
    | ||| |||||||  |||| |||||||||||||||||    
T  31699515 acgtagccaacacctataagcacccacatcatcgtta 31699551  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 245 - 321
Target Start/End: Complemental strand, 2077300 - 2077225
Alignment:
Q  245 ttacattccaactaccaacccaagtgcaaaaaccttatgtaaccaacactaataaccacccacatcatcgttaactc 321  Q
    ||||||||||| | |||||||||   ||||||||| ||||||||| ||| |||||||||||||||||||||||||||    
T  2077300 ttacattccaaatcccaacccaacatcaaaaacct-atgtaaccatcaccaataaccacccacatcatcgttaactc 2077225  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 107 - 152
Target Start/End: Original strand, 15496015 - 15496060
Alignment:
Q  107 gacctagtatcaacaccaccgtgaaaaccaccacgaaacaccacaa 152  Q
    |||| ||||||| ||||||| |||||||||||||||||||||||||    
T  15496015 gaccaagtatcagcaccaccatgaaaaccaccacgaaacaccacaa 15496060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 107 - 157
Target Start/End: Complemental strand, 2077412 - 2077362
Alignment:
Q  107 gacctagtatcaacaccaccgtgaaaaccaccacgaaacaccacaaacgga 157  Q
    |||| ||||||||||||||| || |||||||||||||  ||||||||||||    
T  2077412 gacccagtatcaacaccaccatggaaaccaccacgaagtaccacaaacgga 2077362  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 182 - 311
Target Start/End: Original strand, 9910838 - 9910966
Alignment:
Q  182 ccaactcacaagcttctcaacatcaacaccaaaatatcaccaccatgcnnnnnnnngacaccattaca-ttccaactaccaacccaagtgcaaaaacctt 280  Q
    |||||| |||||||||| | ||||||||||||||||||||||||| ||         ||||||||  | ||| |||| |||||||||  | |||||||||    
T  9910838 ccaacttacaagcttctaatcatcaacaccaaaatatcaccaccacgcaaaaaat--acaccatttaagttcaaactcccaacccaacaggaaaaacctt 9910935  T
Q  281 atgtaaccaacactaataaccacccacatca 311  Q
    |||||||||||||  ||||||||||||||||    
T  9910936 atgtaaccaacacctataaccacccacatca 9910966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 107 - 157
Target Start/End: Original strand, 9910758 - 9910808
Alignment:
Q  107 gacctagtatcaacaccaccgtgaaaaccaccacgaaacaccacaaacgga 157  Q
    |||| ||||||||||||| | || ||||||||||||| |||||||||||||    
T  9910758 gacccagtatcaacaccatcatggaaaccaccacgaagcaccacaaacgga 9910808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 108 - 157
Target Start/End: Original strand, 23635972 - 23636021
Alignment:
Q  108 acctagtatcaacaccaccgtgaaaaccaccacgaaacaccacaaacgga 157  Q
    ||||||||||||||||||| || ||||||||| ||| |||||||||||||    
T  23635972 acctagtatcaacaccaccatggaaaccaccatgaagcaccacaaacgga 23636021  T

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Target: scaffold0092 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 107 - 155
Target Start/End: Original strand, 23312 - 23360
Alignment:
Q  107 gacctagtatcaacaccaccgtgaaaaccaccacgaaacaccacaaacg 155  Q
    |||||||||||| ||||||| || |||||||||| || |||||||||||    
T  23312 gacctagtatcagcaccaccatggaaaccaccacaaagcaccacaaacg 23360  T

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