View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2215_low_5 (Length: 573)
Name: NF2215_low_5
Description: NF2215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2215_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 467; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 16 - 541
Target Start/End: Complemental strand, 45636522 - 45635995
Alignment:
| Q |
16 |
atgcagagaaatcttagaggatccgctnnnnnnngagttttttcatttgcaaaacgacctaacaaaattcgaaagaactaattcttctaaagtccttttc |
115 |
Q |
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| T |
45636522 |
atgcagagaaatcgtagaggatccgctaaaaaaagagttttttcatttgcaaaacgacctaacaaaattcgaaagaactaattcttctaaagtccttttc |
45636423 |
T |
|
| Q |
116 |
atgttgagaatctacttatttgaaaagatgatcaaatcatttgatttgttggtcacaagttggcaagtgttaaggcaagagaaagagataaaggtttgtt |
215 |
Q |
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| T |
45636422 |
atgttgagaatctacttatttgaaaagatgatcaaatcatttgatttgttggtcacaagttggcaagtgttaaggcaagagaaagagataaaggtttgtt |
45636323 |
T |
|
| Q |
216 |
taaagggaaacttgggagaatggacagaaaaataactcaattatgtgaaaaattgtttgagttgagtcaaaacatagataatgatacaattgattttcgt |
315 |
Q |
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| T |
45636322 |
taaagggaaacttgagagaatggacagaaaaataactcaattatgtgaaaaattgtttgagttgagtcaaaacatagataatgatacaattgattttctt |
45636223 |
T |
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| Q |
316 |
aaaaacatttggtaacaatgaacatattactggtaatgtaaagaataatattattgattccgtgcagtaaagaaaggataatattctaatggactgattt |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
45636222 |
aaaaacatttggtaacaatgaacatattactggtaatgtaaagaataatattattgattccgtgcagtaaagaaaggataatattctaatgcactgattt |
45636123 |
T |
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| Q |
416 |
gtgtggctaggaatttggagcctttaaacaaa-tggtttgaagtttgatttttgccgaaaaaatttgtttgtttattgaagatctaacatgctacaattt |
514 |
Q |
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| T |
45636122 |
gcgtggctaggaatttggagcctttaaacaaattggttagaagtttgatttttgccgaaaaaatttgtttgtttattgaagatctaacatgctacaattt |
45636023 |
T |
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| Q |
515 |
t-aacattgaacaaagtataacttagaa |
541 |
Q |
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| T |
45636022 |
taaacattgaacaaagtataacttagaa |
45635995 |
T |
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