View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2216_high_10 (Length: 242)

Name: NF2216_high_10
Description: NF2216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2216_high_10
NF2216_high_10
[»] chr5 (8 HSPs)
chr5 (1-223)||(27497042-27497264)
chr5 (1-209)||(22909319-22909539)
chr5 (2-183)||(17977997-17978189)
chr5 (109-178)||(15811662-15811731)
chr5 (111-182)||(23342164-23342235)
chr5 (79-158)||(27950544-27950622)
chr5 (144-209)||(22910644-22910709)
chr5 (79-147)||(27347070-27347137)
[»] chr1 (3 HSPs)
chr1 (2-215)||(41384162-41384367)
chr1 (40-125)||(43253132-43253224)
chr1 (86-182)||(34551195-34551293)
[»] scaffold0127 (2 HSPs)
scaffold0127 (2-215)||(36243-36448)
scaffold0127 (6-223)||(29329-29538)
[»] chr6 (4 HSPs)
chr6 (40-162)||(12801402-12801524)
chr6 (40-125)||(12801681-12801766)
chr6 (88-223)||(20386013-20386147)
chr6 (86-162)||(19630518-19630593)
[»] scaffold0054 (1 HSPs)
scaffold0054 (101-209)||(16984-17092)
[»] scaffold0210 (1 HSPs)
scaffold0210 (40-209)||(6267-6435)
[»] chr4 (3 HSPs)
chr4 (40-161)||(23186628-23186749)
chr4 (84-182)||(49606717-49606814)
chr4 (130-209)||(8909766-8909845)
[»] chr3 (4 HSPs)
chr3 (40-215)||(12719531-12719705)
chr3 (40-224)||(54310152-54310333)
chr3 (92-179)||(1477370-1477457)
chr3 (40-104)||(3733059-3733123)
[»] chr8 (3 HSPs)
chr8 (40-183)||(4258190-4258331)
chr8 (87-182)||(28286361-28286455)
chr8 (109-182)||(14194832-14194905)
[»] chr2 (5 HSPs)
chr2 (40-182)||(16414913-16415062)
chr2 (80-215)||(16251739-16251875)
chr2 (101-208)||(21483137-21483240)
chr2 (40-147)||(32980649-32980759)
chr2 (40-80)||(37126028-37126068)
[»] scaffold0512 (1 HSPs)
scaffold0512 (54-150)||(11574-11674)


Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-104; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 27497042 - 27497264
Alignment:
Q  1 cagcattaagtgtagatataacctatgcttaaagaaattctataaatagcctccaaaatttcaccatttctcacaccatcccaccctctcctcctctttc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  27497042 cagcattaagtgtagatataacctatgcttaaagaaattctataaatagcctccaaaattccaccatttctcacaccatcccaccctctcctcctctttc 27497141  T
Q  101 ttctacgcacaatgtgtttccatcgccgtcctttcataaaaagaggctactttggaaactcaagaattatatgaacggtcaacagaaaaggtaacacgct 200  Q
    ||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||    
T  27497142 ttctatgcacaatgtgtttccatcgtcgccctttcataaaaagaggctactttggaaattcaaggattatatgaacggtcaacagaaaaggtaacgcgct 27497241  T
Q  201 gcaaagaagtacggtatgtctgg 223  Q
    ||||||||| |||||||||||||    
T  27497242 gcaaagaagcacggtatgtctgg 27497264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 22909539 - 22909319
Alignment:
Q  1 cagcattaagtgtagatataacctatgcttaaagaaattctataaatagcctccaaaat-ttcaccatttctcacaccatccc----accctctcctcct 95  Q
    |||| ||||||||||||||||||||||||||| |||||  ||||||||||||||||||  ||||| ||||||||||||||  |    || ||||||||||    
T  22909539 cagccttaagtgtagatataacctatgcttaacgaaatcttataaatagcctccaaaaccttcac-atttctcacaccatttctcaaactctctcctcct 22909441  T
Q  96 --------ctttcttctacgcacaatgtgtttccatcgccgtcctttcataaaaagaggctactttggaaactcaagaattatatgaacggtcaacagaa 187  Q
            ||| |||||| ||||||| |||||||||||  | | ||||||||||| ||||||||||| ||||||| | |||||||||||| ||||| |      
T  22909440 ttcctcatcttccttctatgcacaatttgtttccatcgttggcttttcataaaaataggctactttgaaaactcagggattatatgaacgatcaacgggg 22909341  T
Q  188 aaggtaacacgctgcaaagaag 209  Q
    |||| ||| |||||||||||||    
T  22909340 aaggcaacgcgctgcaaagaag 22909319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 2 - 183
Target Start/End: Complemental strand, 17978189 - 17977997
Alignment:
Q  2 agcattaagtgtagatataacctatgcttaaagaaattctataaatagcctccaaaat-ttcaccatttctcacaccatcccacc---ctctcctcctct 97  Q
    ||||||||| |||||||||||| |||||||||||||| |||||||||||||||||||  ||||| ||||||||||| ||  | |    ||||||||||||    
T  17978189 agcattaagcgtagatataaccgatgcttaaagaaatcctataaatagcctccaaaaccttcac-atttctcacactatttctcaaatctctcctcctct 17978091  T
Q  98 ttc--------ttctacgcacaatgtgtttccatcgccgtcctttcataaaaagaggctactttggaaactcaagaattatatgaacggtcaac 183  Q
      |        ||||| ||||||||||||||||| |  | | ||||||||||||||| ||||||||||||||| | ||||||||||||||||||    
T  17978090 ccccatctgctttctatgcacaatgtgtttccattgttgacatttcataaaaagaggttactttggaaactcatggattatatgaacggtcaac 17977997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 109 - 178
Target Start/End: Complemental strand, 15811731 - 15811662
Alignment:
Q  109 acaatgtgtttccatcgccgtcctttcataaaaagaggctactttggaaactcaagaattatatgaacgg 178  Q
    |||||||||||||||||  | | ||||||||||||| ||||||||||||||||||| ||| |||||||||    
T  15811731 acaatgtgtttccatcgttggcatttcataaaaagatgctactttggaaactcaaggattgtatgaacgg 15811662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 182
Target Start/End: Complemental strand, 23342235 - 23342164
Alignment:
Q  111 aatgtgtttccatcgccgtcctttcataaaaagaggctactttggaaactcaagaattatatgaacggtcaa 182  Q
    ||||||||||||||   | ||||||||||||||||||| ||||||||||||| | ||  |||||||||||||    
T  23342235 aatgtgtttccatcattgacctttcataaaaagaggctgctttggaaactcagggatcgtatgaacggtcaa 23342164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 79 - 158
Target Start/End: Original strand, 27950544 - 27950622
Alignment:
Q  79 tcccaccctctcctcctctttcttctacgcacaatgtgtttccatcgccgtcctttcataaaaagaggctactttggaaa 158  Q
    |||||||||||||||||||| |||||||  || ||||||||||||||    ||||||||||||||||||  |||||||||    
T  27950544 tcccaccctctcctcctcttccttctac-aaccatgtgtttccatcgttagcctttcataaaaagaggcctctttggaaa 27950622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 209
Target Start/End: Complemental strand, 22910709 - 22910644
Alignment:
Q  144 aggctactttggaaactcaagaattatatgaacggtcaacagaaaaggtaacacgctgcaaagaag 209  Q
    ||||||||||||||||| | | |||||||||||||||||| | ||||| ||| ||||| |||||||    
T  22910709 aggctactttggaaacttagggattatatgaacggtcaacgggaaaggcaacgcgctggaaagaag 22910644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 147
Target Start/End: Complemental strand, 27347137 - 27347070
Alignment:
Q  79 tcccaccctctcctcctctttcttctacgcacaatgtgtttccatcgccgtcctttcataaaaagaggc 147  Q
    |||||||||||||||||||| |||||||  || ||||||||||||||  | ||||||||| ||||||||    
T  27347137 tcccaccctctcctcctcttccttctac-aaccatgtgtttccatcgttgacctttcatagaaagaggc 27347070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 89; Significance: 5e-43; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 2 - 215
Target Start/End: Original strand, 41384162 - 41384367
Alignment:
Q  2 agcattaagtgtagatataacctatgcttaaagaaattctataaatagcctccaaaatttcaccatttctcacaccatcccaccctctcctcctctttct 101  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||  ||||| ||||||       || |||||||||||| |||||||    
T  41384162 agcattaagtgtagatataacctatgcttaaagaaatcctataaatagcctccaaaccttcac-atttct-------tcacaccctctcctc-tctttct 41384252  T
Q  102 tctacgcacaatgtgtttccatcgccgtcctttcataaaaagaggctac-tttggaaactcaagaattatatgaacggtcaacagaaaaggtaacacgct 200  Q
    |||| |||||||||||||||||||| | ||||||||||||||||||||| |||| ||||||| |  ||||| || || ||||| |  |||| ||||||||    
T  41384253 tctatgcacaatgtgtttccatcgctgacctttcataaaaagaggctacttttgtaaactcagggtttataagaccgatcaacggggaaggcaacacgct 41384352  T
Q  201 gcaaagaagtacggt 215  Q
    ||||||||| |||||    
T  41384353 gcaaagaagcacggt 41384367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 125
Target Start/End: Original strand, 43253132 - 43253224
Alignment:
Q  40 ctataaatagcctccaaaatttcaccatttctcacacca----tcccaccctctcctcctctttcttctacgcaca---atgtgtttccatcg 125  Q
    ||||||||| |||| |||  | ||||||||||||||| |    |||||||||||||||||||| |||||||| |||   ||||||||||||||    
T  43253132 ctataaataccctctaaacctccaccatttctcacacaacctctcccaccctctcctcctcttccttctacgtacaaccatgtgtttccatcg 43253224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 182
Target Start/End: Original strand, 34551195 - 34551293
Alignment:
Q  86 ctctcctcctctttcttctacgcacaatgtgtttccatcgccgtcctttcataaaaaga-ggcta--ctttggaaactcaagaattatatgaacggtcaa 182  Q
    ||||||||||||| |||||||  ||||||||||| || ||  | ||||||||||||||| |||||  ||||||||| ||| | ||| |||||||||||||    
T  34551195 ctctcctcctcttccttctaca-acaatgtgttttcaccgttggcctttcataaaaagatggctatactttggaaattcagggattgtatgaacggtcaa 34551293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 2 - 215
Target Start/End: Complemental strand, 36448 - 36243
Alignment:
Q  2 agcattaagtgtagatataacctatgcttaaagaaattctataaatagcctccaaaatttcaccatttctcacaccatcccaccctctcctcctctttct 101  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||  |||| |||||||       || ||||||||||| ||||||||    
T  36448 agcattaagtgtagatataacctatgcttaaagaaatcctataaatagcctccaaaccttca-catttct-------tcacaccctctcct-ctctttct 36358  T
Q  102 tctacgcacaatgtgtttccatcgccgtcctttcataaaaagaggcta-ctttggaaactcaagaattatatgaacggtcaacagaaaaggtaacacgct 200  Q
    |||| |||||||||||||||||||| | ||||||||||||||||||||  |||| ||||||| |  ||||| || || ||||| |  | || ||||||||    
T  36357 tctatgcacaatgtgtttccatcgctgacctttcataaaaagaggctatttttgtaaactcagggtttataagaccgatcaacggggagggcaacacgct 36258  T
Q  201 gcaaagaagtacggt 215  Q
    ||||||||| |||||    
T  36257 gcaaagaagcacggt 36243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 6 - 223
Target Start/End: Complemental strand, 29538 - 29329
Alignment:
Q  6 ttaagtgtagatataacctatgcttaaagaaattctataaatagcctccaaaatttcaccatttctcacaccatcccaccctctcctcctctttcttcta 105  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||  ||||| | ||||       || |||||||||||| |||||||||||    
T  29538 ttaagtgtagatataacctatgcttaaagaaatcctataaatagcctccaaaccttcac-acttct-------tcacaccctctcctc-tctttcttcta 29448  T
Q  106 cgcacaatgtgtttccatcgccgtcctttcataaaaagaggcta-ctttggaaactcaagaattatatgaacggtcaacagaaaaggtaacacgctgcaa 204  Q
     |||||||||||||||||||| | ||||||||||||||||||||  |||| ||||||| |  ||||| || || ||||| |  | || ||||||||||||    
T  29447 tgcacaatgtgtttccatcgctgacctttcataaaaagaggctatttttgtaaactcagggtttataagaccgatcaacggggagggcaacacgctgcaa 29348  T
Q  205 agaagtacggtatgtctgg 223  Q
    ||||| ||||| |||||||    
T  29347 agaagcacggtctgtctgg 29329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 7e-30; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 40 - 162
Target Start/End: Complemental strand, 12801524 - 12801402
Alignment:
Q  40 ctataaatagcctccaaaatttcaccatttctcacaccatcccaccctctcctcctctttcttctacgcacaatgtgtttccatcgccgtcctttcataa 139  Q
    ||||||||| ||||||||||  ||||||||| ||||||||| |||| ||||| |||||| |||||| |||||||||||||||||||| | ||||||||||    
T  12801524 ctataaataacctccaaaatgccaccatttcccacaccatcacaccttctccccctcttccttctatgcacaatgtgtttccatcgctgacctttcataa 12801425  T
Q  140 aaagaggctactttggaaactca 162  Q
    ||||| | ||||||| |||||||    
T  12801424 aaagacgttactttgaaaactca 12801402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 40 - 125
Target Start/End: Complemental strand, 12801766 - 12801681
Alignment:
Q  40 ctataaatagcctccaaaatttcaccatttctcacaccatcccaccctctcctcctctttcttctacgcacaatgtgtttccatcg 125  Q
    ||||||||| ||||||||||  ||||||||| ||||||||| |||| ||||| |||||| |||||| |||||||||||||||||||    
T  12801766 ctataaataacctccaaaatgccaccatttcccacaccatcacaccttctccccctcttccttctatgcacaatgtgtttccatcg 12801681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 88 - 223
Target Start/End: Complemental strand, 20386147 - 20386013
Alignment:
Q  88 ctcctcctctttcttctacgcacaatgtgtttccatcgccgtcctttcataaaaagaggctactttggaaactcaagaattatatgaacggtcaacagaa 187  Q
    ||||||||||| |||||||  ||||||||||| ||||   | |||||||||||||||| |||||||| ||| ||| ||||| ||| |||||||||  | |    
T  20386147 ctcctcctcttccttctaca-acaatgtgttttcatcattgacctttcataaaaagagactactttgaaaattcaggaattgtataaacggtcaatggga 20386049  T
Q  188 aaggtaacacgctgcaaagaagtacggtatgtctgg 223  Q
    | ||| || ||||||||||||| ||||| |||||||    
T  20386048 atggtgacgcgctgcaaagaagcacggtttgtctgg 20386013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 162
Target Start/End: Original strand, 19630518 - 19630593
Alignment:
Q  86 ctctcctcctctttcttctacgcacaatgtgtttccatcgccgtcctttcataaaaagaggctactttggaaactca 162  Q
    ||||||||||||| |||||||  ||||||||||| |||||  | ||||||||||||| | |||||||||| ||||||    
T  19630518 ctctcctcctcttccttctaca-acaatgtgttttcatcgttgacctttcataaaaatatgctactttgggaactca 19630593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 101 - 209
Target Start/End: Complemental strand, 17092 - 16984
Alignment:
Q  101 ttctacgcacaatgtgtttccatcgccgtcctttcataaaaagaggctactttggaaactcaagaattatatgaacggtcaacagaaaaggtaacacgct 200  Q
    ||||| ||||||| |||||||||||| |  |||||||||||||||||||||||||||||||| | ||||||||||||||||||||  |||  ||||||||    
T  17092 ttctatgcacaatatgtttccatcgctggtctttcataaaaagaggctactttggaaactcagggattatatgaacggtcaacagggaagacaacacgct 16993  T
Q  201 gcaaagaag 209  Q
    |||||||||    
T  16992 gcaaagaag 16984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0210 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 40 - 209
Target Start/End: Complemental strand, 6435 - 6267
Alignment:
Q  40 ctataaatagcctccaaaatttcaccatttctcacaccatcccaccctctcctcctctttcttctacgcacaatgtgtttccatcgccgtcctttcataa 139  Q
    ||||||||||||| ||||||  |||||||| |||||||||| | ||||||| ||||||| |||||| |||| ||||||||||||||  |  |||||||||    
T  6435 ctataaatagcctacaaaatgccaccatttttcacaccatcacgccctctcatcctcttccttctatgcacgatgtgtttccatcgttggtctttcataa 6336  T
Q  140 aaagaggctactttggaaactcaagaattatatgaacggtcaacagaaaaggtaacacgctgcaaagaag 209  Q
    ||||||  | |||||||||||||    || |||||||| ||||||   |||| |||||||| ||||||||    
T  6335 aaagagtat-ctttggaaactcagtgtttgtatgaacgatcaacaaggaaggcaacacgcttcaaagaag 6267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 40 - 161
Target Start/End: Original strand, 23186628 - 23186749
Alignment:
Q  40 ctataaatagcctccaaaatttcaccatttctcacaccatcccaccctctcctcctctttcttctacgcacaatgtgtttccatcgccgtcctttcataa 139  Q
    ||||||||||||||||||||  |||||||||||||   ||| |||||| || ||||||| |||||| ||||||||||||||  ||   | ||||||||||    
T  23186628 ctataaatagcctccaaaatcccaccatttctcaccggatcacaccctttcatcctcttccttctatgcacaatgtgtttcagtcattggcctttcataa 23186727  T
Q  140 aaagaggctactttggaaactc 161  Q
    ||||| ||||||||||||||||    
T  23186728 aaagatgctactttggaaactc 23186749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 84 - 182
Target Start/End: Original strand, 49606717 - 49606814
Alignment:
Q  84 ccctctcctcctctttcttctacgcacaatgtgtttccatcgccgtcctttcataaaaagaggctactttggaaactcaagaattatatgaacggtcaa 182  Q
    ||||||||||||||||||| |||  ||||||||||| ||||   | ||||||||||||| ||| ||||||||||||||||  ||| ||||||| |||||    
T  49606717 ccctctcctcctctttcttataca-acaatgtgttttcatcattgacctttcataaaaatagggtactttggaaactcaaagattgtatgaactgtcaa 49606814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 209
Target Start/End: Complemental strand, 8909845 - 8909766
Alignment:
Q  130 cctttcataaaaagaggctactttggaaactcaagaattatatgaacggtcaacagaaaaggtaacacgctgcaaagaag 209  Q
    ||||||||||||||| ||||||||||||||||| |  || |||||||||||||||   |||| ||| || ||||||||||    
T  8909845 cctttcataaaaagatgctactttggaaactcagggtttgtatgaacggtcaacaaggaaggcaacgcgttgcaaagaag 8909766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 40 - 215
Target Start/End: Original strand, 12719531 - 12719705
Alignment:
Q  40 ctataaatagcctccaaaatttcaccatttctcacaccatcccaccctctcctcctctttcttctacgcacaatgtgtttccatcgccgtcctttcataa 139  Q
    ||||||||||||| ||||||  |||||||| ||| |||||| | ||||||| ||||||| |||||| ||||||||||||||| |||  |  |||||||||    
T  12719531 ctataaatagcctacaaaatgccaccatttttcaaaccatcacgccctctcatcctcttccttctatgcacaatgtgtttccttcgttggtctttcataa 12719630  T
Q  140 aaagaggctactttggaaactcaagaattatatgaacggtcaacagaaaaggtaacacgctgcaaagaagtacggt 215  Q
    ||||||  | |||||||||||||    || |||||||  ||||||  ||||| |||||||| |||||||| |||||    
T  12719631 aaagagtat-ctttggaaactcagtgtttgtatgaacaatcaacaagaaaggcaacacgcttcaaagaagcacggt 12719705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 40 - 224
Target Start/End: Complemental strand, 54310333 - 54310152
Alignment:
Q  40 ctataaatagcctccaaaat-ttcaccatttctcacaccatcccaccctctcctcctctttcttctacgcacaatgtgtttccatcgccgtcctttcata 138  Q
    |||||||||||||||||||  ||||| |||||||||||  || |  ||||||||| |||| ||| || ||||||||||||| ||||   | ||||||  |    
T  54310333 ctataaatagcctccaaaaccttcac-atttctcacactctctcctcctctcctcatcttccttttatgcacaatgtgttttcatctttgacctttccca 54310235  T
Q  139 aaaagaggctactttggaaactcaagaattatatgaacggtcaacagaaaaggtaacacgctgcaaagaagtacggtatgtctggt 224  Q
     ||||||||||||||| |||||||   ||||||| ||||||||||||  ||||   | ||||||||||||| ||||| ||||||||    
T  54310234 gaaagaggctactttgaaaactcagagattatataaacggtcaacagggaagg---cgcgctgcaaagaagcacggtttgtctggt 54310152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 179
Target Start/End: Original strand, 1477370 - 1477457
Alignment:
Q  92 tcctctttcttctacgcacaatgtgtttccatcgccgtcctttcataaaaagaggctactttggaaactcaagaattatatgaacggt 179  Q
    |||||||  ||||| |||||||||||||||||||  |  ||||||||||| | |||| |||||||||||||   ||||||||||||||    
T  1477370 tcctcttcattctatgcacaatgtgtttccatcgttggtctttcataaaatgcggctcctttggaaactcagtgattatatgaacggt 1477457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 3733123 - 3733059
Alignment:
Q  40 ctataaatagcctccaaaatttcaccatttct-cacaccatcccaccctctcctcctctttcttct 104  Q
    ||||||||||| |||||| |||||| |||||| ||||||||| ||| ||||||||||||| |||||    
T  3733123 ctataaatagcatccaaactttcac-atttcttcacaccatcacactctctcctcctcttccttct 3733059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 40 - 183
Target Start/End: Complemental strand, 4258331 - 4258190
Alignment:
Q  40 ctataaatagcctccaaaatttcaccatttct-cacaccatcccaccctctcctcctctttcttctacgcacaatgtgtttccatcgccgtcctttcata 138  Q
    ||||||||||| |||||| |||||  |||||| ||||||||| |||  | |||||||||| ||||| |  |||||||||||||||||  | |||||||||    
T  4258331 ctataaatagcatccaaactttcat-atttcttcacaccatcacactttatcctcctcttccttcttc--acaatgtgtttccatcgttgacctttcata 4258235  T
Q  139 aaaagaggctactttggaaactcaagaattatatgaacggtcaac 183  Q
    ||| |||||||||||||||||| | |  |||||||| ||||||||    
T  4258234 aaacgaggctactttggaaacttaggggttatatgaccggtcaac 4258190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 87 - 182
Target Start/End: Original strand, 28286361 - 28286455
Alignment:
Q  87 tctcctcctctttcttctacgcacaatgtgtttccatcgccgtcctttcataaaaagaggctactttggaaactcaagaattatatgaacggtcaa 182  Q
    |||| ||||||| |||||||  |||||||| ||||||||  |  |||||||||||||||||||||||||||||| | | ||| |||||||||||||    
T  28286361 tctcttcctcttccttctaca-acaatgtgattccatcgttggtctttcataaaaagaggctactttggaaacttagggattgtatgaacggtcaa 28286455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 182
Target Start/End: Original strand, 14194832 - 14194905
Alignment:
Q  109 acaatgtgtttccatcgccgtcctttcataaaaagaggctactttggaaactcaagaattatatgaacggtcaa 182  Q
    ||||||||||||||||  || ||||| | ||||||||| ||||||||||| ||||| ||| |||||||| ||||    
T  14194832 acaatgtgtttccatcatcgaccttttagaaaaagaggttactttggaaattcaaggattgtatgaacgatcaa 14194905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 182
Target Start/End: Original strand, 16414913 - 16415062
Alignment:
Q  40 ctataaatagcctccaaaatttcaccatttctcacacca-----tcccaccc-tctcctcctctttcttctacgcacaatgtgtttccatcgccgtcctt 133  Q
    |||||||||| || ||||| ||| ||||||||||||| |     |||||||| |||||||||||| |||||||  || ||||||||||||||  | ||||    
T  16414913 ctataaataggcttcaaaagttctccatttctcacacaaacctctcccacccctctcctcctcttccttctaca-accatgtgtttccatcgttggcctt 16415011  T
Q  134 tcataaaaagaggctactttggaaa--ctcaagaattatatgaacggtcaa 182  Q
    ||||| ||||||||  |||||||||   ||||| ||| |||||||||||||    
T  16415012 tcatagaaagaggcatctttggaaattttcaaggattgtatgaacggtcaa 16415062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 80 - 215
Target Start/End: Complemental strand, 16251875 - 16251739
Alignment:
Q  80 cccaccctctcctcctctttcttctacgcacaatgtgtttccatcgccgtcctttcataaaaagaggctactttggaaa--ctcaagaattatatgaacg 177  Q
    ||||||||||||||||||| |||||||   || |||||||||||||  | ||||||||| ||||||||  |||||||||   ||||| ||| ||||||||    
T  16251875 cccaccctctcctcctcttccttctacaatca-tgtgtttccatcgttggcctttcatagaaagaggcatctttggaaattttcaaggattgtatgaacg 16251777  T
Q  178 gtcaacagaaaaggtaacacgctgcaaagaagtacggt 215  Q
    |||||  | || || | | |||||||||||||| ||||    
T  16251776 gtcaatgggaatggaaccgcgctgcaaagaagtgcggt 16251739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 208
Target Start/End: Complemental strand, 21483240 - 21483137
Alignment:
Q  101 ttctacgcacaatgtgtttccatcgccgtcctttcataaaaagaggctactttggaaactcaagaattatatgaacggtcaacagaaaaggtaacacgct 200  Q
    ||||| ||| ||||||||| ||| |  | ||||||||||||||||| |||||||||||||     ||||||||| |||||||| |  |||| ||| ||||    
T  21483240 ttctatgcaaaatgtgttttcattgttggcctttcataaaaagaggatactttggaaact----gattatatgaccggtcaacggggaaggcaacgcgct 21483145  T
Q  201 gcaaagaa 208  Q
    ||||||||    
T  21483144 gcaaagaa 21483137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 147
Target Start/End: Original strand, 32980649 - 32980759
Alignment:
Q  40 ctataaatagcctccaaaatttcaccatttctcacacca----tcccaccctctcctcctctttcttctacgcacaatgtgtttccatcgccgtcctttc 135  Q
    ||||||||| ||| | ||| ||||||||||||||||| |    || ||||||||||||||||| |||||||  ||||||| |||||||||  |  |||||    
T  32980649 ctataaatatccttccaaacttcaccatttctcacacaacatctcacaccctctcctcctcttccttctac-aacaatgtttttccatcgttggtctttc 32980747  T
Q  136 ataaaaagaggc 147  Q
    ||| ||||||||    
T  32980748 atagaaagaggc 32980759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 80
Target Start/End: Complemental strand, 37126068 - 37126028
Alignment:
Q  40 ctataaatagcctccaaaatttcaccatttctcacaccatc 80  Q
    ||||||||| ||||||||  |||||||||||||||||||||    
T  37126068 ctataaataccctccaaaccttcaccatttctcacaccatc 37126028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0512 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0512
Description:

Target: scaffold0512; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 150
Target Start/End: Original strand, 11574 - 11674
Alignment:
Q  54 caaaatttcaccatttctcacaccatcc-----caccctctcctcctctttcttctacgcacaatgtgtttccatcgccgtcctttcataaaaagaggct 148  Q
    |||| ||||||||||||||||||||||      ||| ||||||||||||| |||||||  |||||||||||||||||    |||||||||||||||| ||    
T  11574 caaactttcaccatttctcacaccatcatctcacactctctcctcctcttccttctac-aacaatgtgtttccatcgttaacctttcataaaaagagact 11672  T
Q  149 ac 150  Q
    ||    
T  11673 ac 11674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University