View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2216_high_12 (Length: 232)

Name: NF2216_high_12
Description: NF2216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2216_high_12
NF2216_high_12
[»] chr4 (1 HSPs)
chr4 (17-98)||(35181759-35181840)
[»] scaffold0198 (1 HSPs)
scaffold0198 (17-89)||(18424-18496)
[»] chr3 (2 HSPs)
chr3 (17-89)||(14959181-14959253)
chr3 (17-89)||(39491086-39491158)
[»] chr2 (2 HSPs)
chr2 (17-89)||(2224050-2224122)
chr2 (17-89)||(27585519-27585591)
[»] chr7 (2 HSPs)
chr7 (110-197)||(9785106-9785196)
chr7 (23-94)||(1249509-1249580)


Alignment Details
Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 17 - 98
Target Start/End: Complemental strand, 35181840 - 35181759
Alignment:
Q  17 atttgaatggttaaaaactatgagatatatgtaattcgtgatttattcttgaagtttttaatcgtgatatataacagtgttg 98  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  35181840 atttgaatggttaaaaactaggagatatatgtaattcgtgatttattcttaaagtttttaatcgtgatatatagcagtgttg 35181759  T

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Target: scaffold0198 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: scaffold0198
Description:

Target: scaffold0198; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 18496 - 18424
Alignment:
Q  17 atttgaatggttaaaaactatgagatatatgtaattcgtgatttattcttgaagtttttaatcgtgatatata 89  Q
    |||||| |||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||| ||||||    
T  18496 atttgagtggttaaaaactatgaaatatatgtgattcgtgatttattcttgaagtatttaatcgtggtatata 18424  T

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Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 14959253 - 14959181
Alignment:
Q  17 atttgaatggttaaaaactatgagatatatgtaattcgtgatttattcttgaagtttttaatcgtgatatata 89  Q
    |||||| |||||||||||||||  |||||||| |||||||||||||||||||||| |||||||||| ||||||    
T  14959253 atttgagtggttaaaaactatggaatatatgtgattcgtgatttattcttgaagtatttaatcgtggtatata 14959181  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 39491158 - 39491086
Alignment:
Q  17 atttgaatggttaaaaactatgagatatatgtaattcgtgatttattcttgaagtttttaatcgtgatatata 89  Q
    |||||| |||||||||||||||  |||||||| |||||||||||||||||||||| |||||||||| ||||||    
T  39491158 atttgagtggttaaaaactatggaatatatgtgattcgtgatttattcttgaagtatttaatcgtggtatata 39491086  T

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Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 2224122 - 2224050
Alignment:
Q  17 atttgaatggttaaaaactatgagatatatgtaattcgtgatttattcttgaagtttttaatcgtgatatata 89  Q
    ||||||||||| ||||||||||| |||||||| |||||||||||||||||||| | |||||||||| ||||||    
T  2224122 atttgaatggtcaaaaactatgaaatatatgtgattcgtgatttattcttgaaatatttaatcgtggtatata 2224050  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 27585519 - 27585591
Alignment:
Q  17 atttgaatggttaaaaactatgagatatatgtaattcgtgatttattcttgaagtttttaatcgtgatatata 89  Q
    |||||| |||||||||||||||  |||||||| |||||||||||||||||||||| |||||| ||| ||||||    
T  27585519 atttgagtggttaaaaactatggaatatatgtgattcgtgatttattcttgaagtatttaattgtggtatata 27585591  T

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Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 110 - 197
Target Start/End: Original strand, 9785106 - 9785196
Alignment:
Q  110 gtaaaattagaattgaattcaaacacaataagnnnnnnnnnntgtgtgttaataat---gtataatgtcataaatacttttgaacctataa 197  Q
    ||||||||||||||||||||||||||||||||          ||||||||||||||   ||||||||||||||||||||||||||||||||    
T  9785106 gtaaaattagaattgaattcaaacacaataagaaaaaaaaaatgtgtgttaataatcatgtataatgtcataaatacttttgaacctataa 9785196  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 94
Target Start/End: Complemental strand, 1249580 - 1249509
Alignment:
Q  23 atggttaaaaactatgagatatatgtaattcgtgatttattcttgaagtttttaatcgtgatatataacagt 94  Q
    |||||||| |||||||  |||||||| |||| |||||||||| | |||| ||||||||||||||||| ||||    
T  1249580 atggttaacaactatggaatatatgtgattcatgatttattcgtaaagtatttaatcgtgatatatagcagt 1249509  T

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