View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2216_high_2 (Length: 494)
Name: NF2216_high_2
Description: NF2216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2216_high_2 |
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| [»] scaffold0272 (1 HSPs) |
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| [»] scaffold0060 (1 HSPs) |
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Alignment Details
Target: scaffold0272 (Bit Score: 442; Significance: 0; HSPs: 1)
Name: scaffold0272
Description:
Target: scaffold0272; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 1 - 482
Target Start/End: Original strand, 2629 - 3111
Alignment:
| Q |
1 |
atgtcggcgagtttgtattacgaatgatgttggaaccctagggagtgtctgattcgttcagggtgtggtttcggaagatcggaggttgaggctggggtat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2629 |
atgtcggcgagtttgtattacgaatgatgttggaaccctagggagtgtctgattcgttcagggtgtggtttcggaagatcggaggttgaggctggggtat |
2728 |
T |
|
| Q |
101 |
gcggtgcgtgcagtttgcgttttggtgtactgcagtttggtatatgttagcctcaggtctgctgttctgttagcagtggcagttttctggtttttctgcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2729 |
gcggtgcgtgcagtttgcgttttggtgtactgcagtttggtatatgttagcctcaggtctgctgttctgttagcagtggcagttttctggtttttctgcc |
2828 |
T |
|
| Q |
201 |
tacaagcttgatgtcatgcgctgtgggagtttttgttgtagttttgtgaggtttctggtaaattttgtattgtccctgtgctgctgtccgtgaattttgt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2829 |
tacaagcttgatgtcatgcgctgtgggagtttttgttgtagttttgtgaggtttctggtaaattttgtattgtccctgtgctgctgtccgtgaattttgt |
2928 |
T |
|
| Q |
301 |
tgtgcttcttgtacatgctcgtttcgaataaattttgttgattctaatt-nnnnnnnnnnngcaaagcatctagcacatggaaggttcggaaacaaccaa |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
2929 |
tgtgcttcttgtacatgctcgtttcgaataaattttgttgattctaattaaaaaaaaaaaagcaaagcatctagcacatggaaggttcggaaacaaccaa |
3028 |
T |
|
| Q |
400 |
gagggagcattacctataaaggacccttctttacgtgttggctaagtaaatgttggtaaacaatcaattgttcacatttgtga |
482 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3029 |
gagggagcattacctataaaggacccttctttacgtgttggctaagtaaatgttggtaaacaatcaattgttcacatttgtga |
3111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 174; Significance: 2e-93; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 2 - 347
Target Start/End: Complemental strand, 47644662 - 47644298
Alignment:
| Q |
2 |
tgtcggcgagtttgtattacgaatgatgttggaaccctagggagtgtctgattcgttcagggtgtggtttcggaagatcggaggttgaggctggggtatg |
101 |
Q |
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|||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||| |
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| T |
47644662 |
tgtcggcgggtttgtattacgaatggtgttggagccctagggagtgtctgattcgttaagggagaggtttcggaagatcggaggttgaggctggggtatg |
47644563 |
T |
|
| Q |
102 |
cggtgcgtgcagtttgcgttttggtgtactgcagtttggtatatgttagcctcaggtctgctgttctgttagcagtggcag--------ttttctggttt |
193 |
Q |
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|||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
47644562 |
cggtgcatgcagtttcagatttggtgtactgcagtttggtatatgttagcctcaggtctgctgttctgttagcagtggcagtttttttgttttctggttt |
47644463 |
T |
|
| Q |
194 |
tt-ctgcctacaagcttgatgtcatgcgctgtgggag--tttttgttgtagttttgtgaggtttctggtaaat---------tttgtattgtccctgtgc |
281 |
Q |
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|| || |||||| ||||| |||||||||||| ||||| ||||||||| | |||||||||||||||||| | |||||||||| ||||||| |
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| T |
47644462 |
ttgcttcctacacgcttgctgtcatgcgctgagggagcttttttgttgctg-tttgtgaggtttctggtatttcagcgcctgtttgtattgttcctgtgc |
47644364 |
T |
|
| Q |
282 |
tgctgtccgtgaattttgttgtgcttcttgtacatgctcgtttcgaataaattttgttgattctaa |
347 |
Q |
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|||||||||||| |||||||||| |||||| ||| ||||||| |||||||||||| ||||||||| |
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| T |
47644363 |
tgctgtccgtgagttttgttgtgtttcttgcacacgctcgttgcgaataaattttactgattctaa |
47644298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 126; Significance: 9e-65; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 5 - 234
Target Start/End: Original strand, 5038120 - 5038356
Alignment:
| Q |
5 |
cggcgagtttgtattacgaatgatgttggaaccctagggagtgtctgattcgttcagggtgtggtttcggaagatcggaggttgaggctggggtatgcgg |
104 |
Q |
| |
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||||||||||||||||| |||| || |||| ||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||| |
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| T |
5038120 |
cggcgagtttgtattacaaatggtgctggagccctagggagtgtctgattcgttaagggagccatttcggaagatcggaggttgaggctggggtatgcgg |
5038219 |
T |
|
| Q |
105 |
tgcgtgcagtttgcgttttggtgtactgcagtttggtatatgttagcctcaggtctgctgttctgttagcagtggc------agttttctggttttt-ct |
197 |
Q |
| |
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|| ||||||| |||| |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||||||||||||| || |
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| T |
5038220 |
tgtgtgcagtgtgcggtttggtgtactgcagttttgtatatgttagcctcaagtctgctgttctgttagcagtggctgttttcgttttctggtttttgct |
5038319 |
T |
|
| Q |
198 |
gcctacaagcttgatgtcatgcgctgtgggagttttt |
234 |
Q |
| |
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|||||| |||| |||||||||||||||||| |||| |
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| T |
5038320 |
tcctacaggctttctgtcatgcgctgtgggagctttt |
5038356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 121 - 260
Target Start/End: Complemental strand, 34514961 - 34514821
Alignment:
| Q |
121 |
tttggtgtactgcagtttggtatatgttagcctcaggtctgctgttctgttagcagtggcagttttctggttttt-ctgcctacaagcttgatgtcatgc |
219 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| || | |||| |||| |||||||| |
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| T |
34514961 |
tttggtgtactgcagttttgtatatgttagcctcaggtctgctgttctgttagcagtttttgttttctggtttttgcttcttacaggctttctgtcatgc |
34514862 |
T |
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| Q |
220 |
gctgtgggag-tttttgttgtagttttgtgaggtttctggta |
260 |
Q |
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| |||||||| ||||||||| | |||||| ||||||||||| |
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| T |
34514861 |
gttgtgggagctttttgttgctg-tttgtggggtttctggta |
34514821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 381 - 483
Target Start/End: Original strand, 34902 - 35000
Alignment:
| Q |
381 |
aaggttcggaaacaaccaagagggagcattacctataaaggacccttctttacgtgttggctaagtaaatgttggtaaacaatcaattgttcacatttgt |
480 |
Q |
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||||||| ||| ||||||| || ||||||||||| |||||||||||||||||| | |||||||| ||| |||| || |||||||| ||||||||||| |
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| T |
34902 |
aaggttccgaagcaaccaaaagtgagcattacctttaaaggacccttctttacatattggctaaataactgttcgt----aatcaattattcacatttgt |
34997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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