View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2216_high_3 (Length: 406)
Name: NF2216_high_3
Description: NF2216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2216_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 295; Significance: 1e-165; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 11 - 385
Target Start/End: Original strand, 25795401 - 25795775
Alignment:
| Q |
11 |
cataggtgttgtgattgtgagatgttattaaatattataggtcatgtttttgtgttaccaaaagaagcttcagctgaaagaaataagcttgtatggttaa |
110 |
Q |
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| T |
25795401 |
cataggtgttgtgattgtgagatgttattaaatattataggtcatgtttttgtgttaccaaaagaagcttcagctgaaagaaataagcttgtatggttaa |
25795500 |
T |
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| Q |
111 |
gttatatagttcagaaccttatagaataagttacatgaatgaaatacctggctctgtgggcacaagtgccagcttcattctcagattaggccaaaccttg |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |
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| T |
25795501 |
gttatatagttcagaaccttatagaataagttacatgaatgaaatacctggctctgtgggcacaagtgccagcttcattctcagattaggccagactttg |
25795600 |
T |
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| Q |
211 |
ttttcatctgcttcccttctttttatgtctttgggggttgaattctacagctacacagctttctggtaccnnnnnnnnnnnngttattctctttgttatg |
310 |
Q |
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|||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||| | |||||||||||||||| |
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| T |
25795601 |
ttttcatctgcttcccttctctttatgtctttgggagttgaattctatagctacacagctttctggtaccttttatctttttgctattctctttgttatg |
25795700 |
T |
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| Q |
311 |
atgataatcttaatttatgtagcacagataacttagactgaaattgtgttcggtttctaacacatcactaacata |
385 |
Q |
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|||||||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||| |||||||||| |
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| T |
25795701 |
atgataatcttaatttatgtagcacatataactcagactgaaattgtgtttggtttctaacacgccactaacata |
25795775 |
T |
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