View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2216_high_4 (Length: 381)

Name: NF2216_high_4
Description: NF2216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2216_high_4
NF2216_high_4
[»] chr6 (3 HSPs)
chr6 (13-363)||(4323680-4324030)
chr6 (89-139)||(8623179-8623229)
chr6 (63-131)||(17168842-17168910)
[»] chr5 (1 HSPs)
chr5 (66-138)||(41542507-41542579)
[»] chr3 (1 HSPs)
chr3 (83-143)||(51733112-51733172)
[»] chr7 (1 HSPs)
chr7 (97-143)||(31924408-31924454)
[»] chr8 (3 HSPs)
chr8 (178-219)||(34489292-34489333)
chr8 (67-139)||(4786373-4786445)
chr8 (101-141)||(26671470-26671510)
[»] chr1 (3 HSPs)
chr1 (65-112)||(22881678-22881725)
chr1 (87-140)||(21057755-21057808)
chr1 (97-153)||(3523373-3523429)
[»] scaffold0011 (1 HSPs)
scaffold0011 (82-140)||(240055-240113)
[»] chr4 (2 HSPs)
chr4 (97-137)||(20974733-20974773)
chr4 (184-216)||(22016067-22016099)


Alignment Details
Target: chr6 (Bit Score: 339; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 13 - 363
Target Start/End: Complemental strand, 4324030 - 4323680
Alignment:
Q  13 aatattgaatttataatccagtgctcacaaaacaaacatgaacactcttgatctatgaagcaccaatatagacacggacaccgaacacgatactgacacg 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4324030 aatattgaatttataatccagtgctcacaaaacaaacatgaacactcttgatctatgaagcaccaatatagacacggacaccgaacacgatactgacacg 4323931  T
Q  113 ttgacaacgataataatttaagaaaatagaaggggttgaatatactacatgtgccagtgtgccatacaccagacacaccttcaatctaaagtgtcagtgc 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4323930 ttgacaacgataataatttaagaaaatagaaggggttgaatatactacatgtgccagtgtgccatacaccagacacaccttcaatctaaagtgtcagtgc 4323831  T
Q  213 tacaaagctcttgatcaagtgagagaaatttccttgcagcatttattgagggatgaaagtttgtatagtgaaacaatccaatcaataaattcaaacagaa 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||     
T  4323830 tacaaagctcttgatcaagtgagagaaatttccttgcagcatttattgagggatgaaagtttgcttagtgaaacaatccaatcaataaattcaaacagag 4323731  T
Q  313 ccctattgtagaccaaataaacactcatctgataagcatgtaagctataag 363  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4323730 ccctattgtagaccaaataaacactcatctgataagcatgtaagctataag 4323680  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 139
Target Start/End: Original strand, 8623179 - 8623229
Alignment:
Q  89 gacaccgaacacgatactgacacgttgacaacgataataatttaagaaaat 139  Q
    ||||||| |||||| ||||||||||||||| |||||| ||||| |||||||    
T  8623179 gacaccggacacgacactgacacgttgacaccgataacaattttagaaaat 8623229  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 131
Target Start/End: Original strand, 17168842 - 17168910
Alignment:
Q  63 atctatgaagcaccaatatagacacggacaccgaacacgatactgacacgttgacaacgataataattt 131  Q
    |||||||||||||  ||  ||||||||||||||||||||| ||  |||||| ||||  |||||||||||    
T  17168842 atctatgaagcacagattcagacacggacaccgaacacgacacaaacacgtcgacattgataataattt 17168910  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 66 - 138
Target Start/End: Complemental strand, 41542579 - 41542507
Alignment:
Q  66 tatgaagcaccaatatagacacggacaccgaacacgatactgacacgttgacaacgataataatttaagaaaa 138  Q
    |||||||||| || | ||||||||||||||   | |||||||||||||||||| |||||||||||| ||||||    
T  41542579 tatgaagcacaaacacagacacggacaccggttatgatactgacacgttgacaccgataataatttgagaaaa 41542507  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 83 - 143
Target Start/End: Original strand, 51733112 - 51733172
Alignment:
Q  83 gacacggacaccgaacacgatactgacacgttgacaacgataataatttaagaaaatagaa 143  Q
    ||||| ||||||||| |||||||||||| ||||||| ||||||||| || |||||||||||    
T  51733112 gacacagacaccgaatacgatactgacaggttgacaccgataataacttgagaaaatagaa 51733172  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 143
Target Start/End: Original strand, 31924408 - 31924454
Alignment:
Q  97 acacgatactgacacgttgacaacgataataatttaagaaaatagaa 143  Q
    |||||| | ||||||||||||| ||||||||||||||||||||||||    
T  31924408 acacgaaattgacacgttgacaccgataataatttaagaaaatagaa 31924454  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 178 - 219
Target Start/End: Original strand, 34489292 - 34489333
Alignment:
Q  178 acaccagacacaccttcaatctaaagtgtcagtgctacaaag 219  Q
    |||| ||||||||||||||||||||||||| |||||||||||    
T  34489292 acacgagacacaccttcaatctaaagtgtcggtgctacaaag 34489333  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 139
Target Start/End: Complemental strand, 4786445 - 4786373
Alignment:
Q  67 atgaagcaccaatatagacacggacaccgaacacgatactgacacgttgacaacgataataatttaagaaaat 139  Q
    |||||||||  ||| |||||| |||||||||||||| |||||||||  |||| |  |||||||||||||||||    
T  4786445 atgaagcacggatacagacactgacaccgaacacgacactgacacgccgacaccattaataatttaagaaaat 4786373  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 141
Target Start/End: Complemental strand, 26671510 - 26671470
Alignment:
Q  101 gatactgacacgttgacaacgataataatttaagaaaatag 141  Q
    |||| |||||||| ||||||||||||||||| |||||||||    
T  26671510 gatattgacacgtagacaacgataataatttgagaaaatag 26671470  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 65 - 112
Target Start/End: Complemental strand, 22881725 - 22881678
Alignment:
Q  65 ctatgaagcaccaatatagacacggacaccgaacacgatactgacacg 112  Q
    |||||||||||  |||||||||||||||||| |||||| |||||||||    
T  22881725 ctatgaagcacggatatagacacggacaccggacacgacactgacacg 22881678  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 140
Target Start/End: Original strand, 21057755 - 21057808
Alignment:
Q  87 cggacaccgaacacgatactgacacgttgacaacgataataatttaagaaaata 140  Q
    |||||||||||||||  |||||||||| |||| || ||||||||| ||||||||    
T  21057755 cggacaccgaacacggcactgacacgtcgacaccgctaataattttagaaaata 21057808  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 153
Target Start/End: Original strand, 3523373 - 3523429
Alignment:
Q  97 acacgatactgacacgttgacaacgataataatttaagaaaatagaaggggttgaat 153  Q
    |||||| |||||||||| |||| |||||||||||| | |||||||||| | ||||||    
T  3523373 acacgacactgacacgtagacaccgataataatttgataaaatagaagtgattgaat 3523429  T

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Target: scaffold0011 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 140
Target Start/End: Complemental strand, 240113 - 240055
Alignment:
Q  82 agacacggacaccgaacacgatactgacacgttgacaacgataataatttaagaaaata 140  Q
    |||||||||||||| ||| || || |||| ||||||||| |||||||||| ||||||||    
T  240113 agacacggacaccggacatgacacggacatgttgacaactataataatttgagaaaata 240055  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 137
Target Start/End: Original strand, 20974733 - 20974773
Alignment:
Q  97 acacgatactgacacgttgacaacgataataatttaagaaa 137  Q
    ||||||||||||||| ||||||  |||||||||||||||||    
T  20974733 acacgatactgacacattgacactgataataatttaagaaa 20974773  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 216
Target Start/End: Original strand, 22016067 - 22016099
Alignment:
Q  184 gacacaccttcaatctaaagtgtcagtgctaca 216  Q
    |||||||||||||||||||||||| ||||||||    
T  22016067 gacacaccttcaatctaaagtgtcggtgctaca 22016099  T

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