View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2216_high_6 (Length: 319)
Name: NF2216_high_6
Description: NF2216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2216_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 11248400 - 11248701
Alignment:
| Q |
1 |
aaagagaagtaaaagaagcaaaagaaaagcatatccaatgaaaagggtaatcagaaatctgaaaccccattacttaaaaaagcaaatttttgagtaagca |
100 |
Q |
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| T |
11248400 |
aaagagaagtaaaagaagcaaaagaaaagcatatccaatgaaaagggtaatcagaaatctgaaaccccattacttaaaaaagcaaatttttgagtaagca |
11248499 |
T |
|
| Q |
101 |
agcaaaagggtatacgaatatagtataaagaacaaaaacaacaacgacaagaaaatcaaacacacgtttttaaaaatgttatgcagcaaagtgcaagaag |
200 |
Q |
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| T |
11248500 |
agtaaaagggtatacgaatatagtataaataacaaaaacaacaacgacaagaaaatcaaacacacgtttttaacaatgttatgcagcaaagtgcaagaag |
11248599 |
T |
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| Q |
201 |
tgtgtgtgcgatgatgactcactatgaaagcagcaatgatgcgatccaatgtgaaaaaactgtgacttgatgagattgaacgtggaaaagagtgaagtat |
300 |
Q |
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| T |
11248600 |
tgtgtgtgcgatgatgactcactatgaaagcagcaatgatgcgatccaatgtgaaaaaactgtgacttgatgagattgaacgtggaaaagagtgaagtat |
11248699 |
T |
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| Q |
301 |
tt |
302 |
Q |
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|| |
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| T |
11248700 |
tt |
11248701 |
T |
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