View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2216_high_8 (Length: 253)
Name: NF2216_high_8
Description: NF2216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2216_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 9 - 241
Target Start/End: Complemental strand, 40059784 - 40059552
Alignment:
| Q |
9 |
agatgaacaccccagaaaaatatcacacataaattaccaaccaaactttacccatagttccattcagcacaaacatatggaccgatgcggagatgcacat |
108 |
Q |
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| T |
40059784 |
agatgaacaccccagaaaaatatcacacataaattaccaaccaaactttacccatagttccattcagcacaaacatatggaccgatgcggagatgcacat |
40059685 |
T |
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| Q |
109 |
atagtcccgcctcagccactgccttcacaaatttcactaaatccttcctctcatcaaaatcatactgcaaaaatccatttcatttcagtgaattataata |
208 |
Q |
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| T |
40059684 |
atagtcccgcctcagccactgccttcacaaatttcactaaatccttcctcccatcaaaatcatactgcaaaaatccatttcatttcagtgaattataata |
40059585 |
T |
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| Q |
209 |
gtctttctaaccttacagtagatcaacaccatg |
241 |
Q |
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| T |
40059584 |
gtctttctaaccttacagtagatcaacaccatg |
40059552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 48 - 223
Target Start/End: Complemental strand, 40077827 - 40077652
Alignment:
| Q |
48 |
accaaactttacccatagttccattcagcacaaacatatggaccgatgcggagatgcacatatagtcccgcctcagccactgccttcacaaatttcacta |
147 |
Q |
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| T |
40077827 |
accaaactttacccgtagttccattcagcacacacatatggaccgatccggagatgcacatatagtcctgcctcagccactgcctttacaaatttcacta |
40077728 |
T |
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| Q |
148 |
aatccttcctctcatcaaaatcatactgcaaaaatccatttcatttcagtgaattataatagtctttctaacctta |
223 |
Q |
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| T |
40077727 |
aatccttcctcccatcaaaatcatactgcaaaaatccatttcatttcaatgaattataatagtctttctaacctta |
40077652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 11 - 234
Target Start/End: Complemental strand, 40085665 - 40085446
Alignment:
| Q |
11 |
atgaacaccccagaaaaatatcacacataaattaccaaccaaactttacccatagttccattcagcacaaacatatggaccgatgcggagatgcacatat |
110 |
Q |
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|||||||||| |||| ||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| || ||||||||||||||| |
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| T |
40085665 |
atgaacaccctcgaaatataatacacataaatta----ccaaactttacccatagttccattcagaacaaacatatggaccaatccggagatgcacatat |
40085570 |
T |
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| Q |
111 |
agtcccgcctcagccactgccttcacaaatttcactaaatccttcctctcatcaaaatcatactgcaaaaatccatttcatttcagtgaattataatagt |
210 |
Q |
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| T |
40085569 |
agacctgcctcagctactgctttcacaaatttcaccaaatccttcctcccatcaaaatcatactgcaaaaatccatttcatttcaatgaattaagataga |
40085470 |
T |
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| Q |
211 |
ctttctaaccttacagtagatcaa |
234 |
Q |
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|||||| | |||| |||||||||| |
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| T |
40085469 |
ctttcttagcttatagtagatcaa |
40085446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 55 - 140
Target Start/End: Original strand, 22015825 - 22015910
Alignment:
| Q |
55 |
tttacccatagttccattcagcacaaacatatggaccgatgcggagatgcacatatagtcccgcctcagccactgccttcacaaat |
140 |
Q |
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||||||| || |||||||||||||| |||||||||||||| |||||||||||||||| || || | || ||||||||||||||| |
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| T |
22015825 |
tttacccgtaattccattcagcacacacatatggaccgatccggagatgcacatataaacctgctgctgctactgccttcacaaat |
22015910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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