View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2216_low_13 (Length: 223)

Name: NF2216_low_13
Description: NF2216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2216_low_13
NF2216_low_13
[»] chr5 (6 HSPs)
chr5 (1-223)||(27496680-27496904)
chr5 (14-215)||(22909684-22909890)
chr5 (107-215)||(23251286-23251394)
chr5 (26-115)||(15728452-15728542)
chr5 (14-104)||(17978433-17978524)
chr5 (26-115)||(15812104-15812193)
[»] chr3 (8 HSPs)
chr3 (14-215)||(33844327-33844531)
chr3 (14-215)||(24628580-24628783)
chr3 (14-176)||(23333264-23333427)
chr3 (133-215)||(3733308-3733390)
chr3 (118-214)||(1477031-1477127)
chr3 (14-176)||(12719143-12719308)
chr3 (72-215)||(54310516-54310669)
chr3 (6-86)||(10493208-10493288)
[»] chr7 (3 HSPs)
chr7 (18-207)||(1380423-1380615)
chr7 (18-207)||(1386527-1386719)
chr7 (14-215)||(1853951-1854157)
[»] chr2 (2 HSPs)
chr2 (14-214)||(21483501-21483703)
chr2 (14-147)||(37126321-37126456)
[»] scaffold0127 (1 HSPs)
scaffold0127 (14-221)||(36593-36800)
[»] scaffold0064 (1 HSPs)
scaffold0064 (12-221)||(61309-61520)
[»] chr1 (1 HSPs)
chr1 (14-186)||(41368183-41368356)
[»] chr4 (3 HSPs)
chr4 (14-176)||(23186238-23186402)
chr4 (123-207)||(39806836-39806920)
chr4 (39-176)||(12692356-12692496)
[»] chr8 (1 HSPs)
chr8 (138-215)||(4258516-4258593)
[»] scaffold0054 (1 HSPs)
scaffold0054 (118-214)||(17346-17442)
[»] scaffold0210 (1 HSPs)
scaffold0210 (43-164)||(6624-6748)


Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 27496680 - 27496904
Alignment:
Q  1 catggttttattttgtggtttctgattatgaacacaaagacgcctatttatagaggtccatgggtgtcctagaccacataaactgtctgtgcatgtggac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||    
T  27496680 catggttttattttgtggtttctgattatgaacacaaagacgcctatttatagaggtccatgagtgtcctggaccacataaactgtctatgcatgtggac 27496779  T
Q  101 cacatgaaaa--aatcaaatttcagattgtataatccgaaatgtccctcaccccacagaaggtgcgcaacttccttcagtttggcccaatattgtaaaaa 198  Q
    ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  27496780 cacatgaaaaaaaatcaaatttcagattgtataatccgaaatgtccctcaccccacagaaggtgcgcaacttccttcagtttggcccaatatcgtaaaaa 27496879  T
Q  199 ttcggattacgtaatccataaacta 223  Q
    |||||||||||||||||||||||||    
T  27496880 ttcggattacgtaatccataaacta 27496904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 14 - 215
Target Start/End: Complemental strand, 22909890 - 22909684
Alignment:
Q  14 tgtggtttctgattatgaacacaaagacgcctatttatagaggtccatgggtgtcctagaccacataaactgtctgtgca-tgtggaccacatgaaaaaa 112  Q
    ||||||||||| |||||||||||  ||| | ||||||||||||||| |||| ||||| ||||||| |||||||| ||||| |||||||||||||||||||    
T  22909890 tgtggtttctggttatgaacacagtgacacatatttatagaggtccctgggcgtcctggaccacagaaactgtcggtgcaatgtggaccacatgaaaaaa 22909791  T
Q  113 tcaaattt----cagattgtataatccgaaatgtccctcaccccacagaaggtgcgcaacttccttcagtttggcccaatattgtaaaaattcggattac 208  Q
      |||| |    | ||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||| |||||||||||||||||    
T  22909790 aaaaatatgttccggattgtataatccgaaatgtccctcaccccacagaagatgcgcagcatccttcagtttggcccaatatcgtaaaaattcggattac 22909691  T
Q  209 gtaatcc 215  Q
     ||||||    
T  22909690 ataatcc 22909684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 107 - 215
Target Start/End: Original strand, 23251286 - 23251394
Alignment:
Q  107 aaaaaatcaaatttcagattgtataatccgaaatgtccctcaccccacagaaggtgcgcaacttccttcagtttggcccaatattgtaaaaattcggatt 206  Q
    |||||||||  |||| |||||||||||||||||||||||||||||||   ||||||||||  |||||||| ||| ||||| ||| ||| ||| |||||||    
T  23251286 aaaaaatcatgtttcggattgtataatccgaaatgtccctcaccccaagtaaggtgcgcagtttccttcaattttgcccagtatcgtataaactcggatt 23251385  T
Q  207 acgtaatcc 215  Q
    || ||||||    
T  23251386 acataatcc 23251394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 26 - 115
Target Start/End: Complemental strand, 15728542 - 15728452
Alignment:
Q  26 ttatgaacacaaagacgcctatttatagaggtccatgggtgtcctagaccacataaactgtctgtgc-atgtggaccacatgaaaaaatca 115  Q
    ||||||| |||| ||| ||||||||||||||| | ||||||||||| | ||||||||||||| |||| ||| ||||||||  |||||||||    
T  15728542 ttatgaaaacaaggacacctatttatagaggtacttgggtgtcctatagcacataaactgtcggtgcaatgcggaccacagaaaaaaatca 15728452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 104
Target Start/End: Complemental strand, 17978524 - 17978433
Alignment:
Q  14 tgtggtttctgattatgaacacaaagacgcctatttatagaggtccatgggtgtcctagaccacataaactgtctgtgc-atgtggaccaca 104  Q
    ||||||||||| ||||||||| |||| | |||||||||  |||||| |  | ||||| ||||||| |||||||| |||| ||||||||||||    
T  17978524 tgtggtttctgcttatgaacataaaggcacctatttattaaggtccctaagcgtcctggaccacagaaactgtcggtgcaatgtggaccaca 17978433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 115
Target Start/End: Complemental strand, 15812193 - 15812104
Alignment:
Q  26 ttatgaacacaaagacgcctatttatagaggtccatgggtgtcctagaccacataaactgtctgtgc-atgtggaccacatgaaaaaatca 115  Q
    ||||||| |||  ||| ||||||||||||||| | |||||||| |  | ||||||||||||| |||| |||||||||||| ||||||||||    
T  15812193 ttatgaaaacagggacacctatttatagaggtacttgggtgtcttgtagcacataaactgtcggtgcaatgtggaccaca-gaaaaaatca 15812104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 110; Significance: 1e-55; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 14 - 215
Target Start/End: Original strand, 33844327 - 33844531
Alignment:
Q  14 tgtggtttctgattatgaacacaaagacgcctatttatagaggtccatgggtgtcctagaccacataaactgtctgtgca-tgtggaccacatgaaaaaa 112  Q
    ||||||||||| ||||||||||| |||| ||||||||||||||||| |||| ||||| ||||||| |||||||| ||||| |||||||||||||||||||    
T  33844327 tgtggtttctggttatgaacacatagacacctatttatagaggtccctgggcgtcctggaccacaaaaactgtcggtgcaatgtggaccacatgaaaaaa 33844426  T
Q  113 --tcaaatttcagattgtataatccgaaatgtccctcaccccacagaaggtgcgcaacttccttcagtttggcccaatattgtaaaaattcggattacgt 210  Q
      |||  || ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||| | ||| ||||||||||| ||||| |    
T  33844427 aatcatgttccagattgtataatccgaaatgtccctcaccccacaaaaggtgagcaacttccttcaatttggccaagtatcgtaaaaattcgaattacat 33844526  T
Q  211 aatcc 215  Q
    |||||    
T  33844527 aatcc 33844531  T

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Target: chr3; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 14 - 215
Target Start/End: Complemental strand, 24628783 - 24628580
Alignment:
Q  14 tgtggtttctgattatgaacacaaagacgcctatttatagaggtccatgggtgtcctagaccacataaactgtctgtgca-tgtggaccacatgaaaaaa 112  Q
    ||||||||||| ||||||||||| |||| ||||||||||||||||  |||| ||||| ||||||| |||| ||| ||||| |||||||||||||||||||    
T  24628783 tgtggtttctggttatgaacacagagacacctatttatagaggtctctgggcgtcctggaccacagaaacagtcggtgcaatgtggaccacatgaaaaaa 24628684  T
Q  113 tcaaatttcag-attgtataatccgaaatgtccctcaccccacagaaggtgcgcaacttccttcagtttggcccaatattgtaaaaattcggattacgta 211  Q
     | |  ||| | ||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||  |||||  ||||| ||    
T  24628683 accatgttccggattgtattatctgaaatgtccctcaccccacagaaggtgcgcagcttccttcagtttggcccattatcgtattaattcaaattacata 24628584  T
Q  212 atcc 215  Q
    ||||    
T  24628583 atcc 24628580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 14 - 176
Target Start/End: Complemental strand, 23333427 - 23333264
Alignment:
Q  14 tgtggtttctgattatgaacacaaagacgcctatttatagaggtccatgggtgtcctagaccacataaactgtctgtgca-tgtggaccacatgaaaaaa 112  Q
    ||||||||||| |||||| ||||  ||| ||||||||| |||||   |||| ||||| |||||||  ||||||| ||||| ||||||||||||||||||     
T  23333427 tgtggtttctggttatgagcacagggacacctatttattgaggtttttgggcgtcctggaccacaggaactgtcggtgcaatgtggaccacatgaaaaat 23333328  T
Q  113 tcaaatttcagattgtataatccgaaatgtccctcaccccacagaaggtgcgcaacttccttca 176  Q
    |||  |||| |||||||||||| |||||||||||||||  ||| ||||||||||| ||||||||    
T  23333327 tcatgtttcggattgtataatctgaaatgtccctcaccttacataaggtgcgcaatttccttca 23333264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 133 - 215
Target Start/End: Complemental strand, 3733390 - 3733308
Alignment:
Q  133 tccgaaatgtccctcaccccacagaaggtgcgcaacttccttcagtttggcccaatattgtaaaaattcggattacgtaatcc 215  Q
    |||| |||| ||||||||||||| ||||||||||||||||||||||||| || | ||| ||||||||||||||||| ||||||    
T  3733390 tccggaatgcccctcaccccacaaaaggtgcgcaacttccttcagtttgtcctagtatcgtaaaaattcggattacataatcc 3733308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 118 - 214
Target Start/End: Original strand, 1477031 - 1477127
Alignment:
Q  118 tttcagattgtataatccgaaatgtccctcaccccacagaaggtgcgcaacttccttcagtttggcccaatattgtaaaaattcggattacgtaatc 214  Q
    |||| |||| |||||||||||||||||||||||||| | |||||||||  ||||||||||||| ||||| |||  || ||||||||||||| |||||    
T  1477031 tttcggattatataatccgaaatgtccctcaccccatataaggtgcgcggcttccttcagttttgcccagtatcatataaattcggattacataatc 1477127  T

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Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 176
Target Start/End: Original strand, 12719143 - 12719308
Alignment:
Q  14 tgtggtttctgattatgaacacaaagacgcctatttatagaggtccatgggtgtcctagaccacataaactgtctgtgc-atgtggaccacatg--aaaa 110  Q
    ||||||| ||| ||||||| |||  ||| ||||||||||||||||  |  ||||||| ||||||| |||||||| |||| ||| |||||||| |  ||||    
T  12719143 tgtggttactggttatgaaaacagggacacctatttatagaggtctctacgtgtcctggaccacaaaaactgtcggtgcaatgcggaccacaggaaaaaa 12719242  T
Q  111 aatcaaatttcagattgtataatccgaaatgtccctcaccccacagaaggtgcgcaacttccttca 176  Q
    ||||| | |||||||  || ||||| ||||||||||||||||||| ||| || |||  ||||||||    
T  12719243 aatcataattcagataataaaatccaaaatgtccctcaccccacataagatgtgcagtttccttca 12719308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 72 - 215
Target Start/End: Complemental strand, 54310669 - 54310516
Alignment:
Q  72 gaccacataaactgtctgtgca-tgtggaccacatgaaaaaa-----tcaaatttcagattgtataatccgaaatgtccctcac----cccacagaaggt 161  Q
    ||||||||||||||||  |||| |||||||| ||||||||||     |||  || |||||||||||||| || |||||||||||    |||| | |||||    
T  54310669 gaccacataaactgtcgatgcaatgtggaccgcatgaaaaaaaataatcatgttacagattgtataatctgagatgtccctcactcaccccatataaggt 54310570  T
Q  162 gcgcaacttccttcagtttggcccaatattgtaaaaattcggattacgtaatcc 215  Q
    | ||||||||||||| ||||||||| ||| |||| |||| ||||||| ||||||    
T  54310569 gtgcaacttccttcaatttggcccagtatcgtaataatttggattacataatcc 54310516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 86
Target Start/End: Complemental strand, 10493288 - 10493208
Alignment:
Q  6 ttttattttgtggtttctgattatgaacacaaagacgcctatttatagaggtccatgggtgtcctagaccacataaactgt 86  Q
    |||| ||||||||||||||  |||||| |||  ||| |||||||||||| ||| ||||| |||||  |||||| |||||||    
T  10493288 tttttttttgtggtttctggatatgaaaacagggacacctatttatagaagtctatgggcgtcctgaaccacaaaaactgt 10493208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 90; Significance: 1e-43; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 18 - 207
Target Start/End: Original strand, 1380423 - 1380615
Alignment:
Q  18 gtttctgattatgaacacaaagacgcctatttatagaggtccatgggtgtcctagaccacataaactgtctgtgca-tgtggaccacatgaaaaaa--tc 114  Q
    ||||||| ||||||||||| |||| |||||||||||||||||||||| ||||| ||||| | ||| |||| ||||| |||||||||||||||||||  ||    
T  1380423 gtttctggttatgaacacagagacacctatttatagaggtccatgggcgtcctggaccatagaaattgtcggtgcaatgtggaccacatgaaaaaaaatc 1380522  T
Q  115 aaatttcagattgtataatccgaaatgtccctcaccccacagaaggtgcgcaacttccttcagtttggcccaatattgtaaaaattcggatta 207  Q
    |  |||||||||||||||| |||||||||||||||||||||||||||| |||  |||||| | ||| ||||| |||  |||||||||||||||    
T  1380523 atgtttcagattgtataattcgaaatgtccctcaccccacagaaggtgggcagtttcctttaattttgcccagtatcctaaaaattcggatta 1380615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 18 - 207
Target Start/End: Original strand, 1386527 - 1386719
Alignment:
Q  18 gtttctgattatgaacacaaagacgcctatttatagaggtccatgggtgtcctagaccacataaactgtctgtgca-tgtggaccacatgaaaaaa--tc 114  Q
    ||||||| ||||||||||| |||| |||||||||||||||||||||| ||||| ||||| | ||| |||| ||||| |||||||||||||||||||  ||    
T  1386527 gtttctggttatgaacacagagacacctatttatagaggtccatgggcgtcctggaccatagaaattgtcggtgcaatgtggaccacatgaaaaaaaatc 1386626  T
Q  115 aaatttcagattgtataatccgaaatgtccctcaccccacagaaggtgcgcaacttccttcagtttggcccaatattgtaaaaattcggatta 207  Q
    |  |||||||||||||||| |||||||||||||||||||||||||||| |||  |||||| | ||| ||||| |||  |||||||||||||||    
T  1386627 atgtttcagattgtataattcgaaatgtccctcaccccacagaaggtgggcagtttcctttaattttgcccagtatcctaaaaattcggatta 1386719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 14 - 215
Target Start/End: Original strand, 1853951 - 1854157
Alignment:
Q  14 tgtggtttctgattatgaacacaaagacgcctatttatagaggtccatgggtgtcctagaccacataaactgtctgtgca-tgtggaccacatgaaaaaa 112  Q
    ||||||||||| ||||||||||| |||| ||||||||||||||||| |||| ||||| ||||||| ||| |||| ||||| ||| ||||| |||||||||    
T  1853951 tgtggtttctggttatgaacacagagacacctatttatagaggtccctgggcgtcctggaccacacaaattgtcggtgcaatgttgaccatatgaaaaaa 1854050  T
Q  113 ----tcaaatttcagattgtataatccgaaatgtccctcaccccacagaaggtgcgcaacttccttcagtttggcccaatattgtaaaaattcggattac 208  Q
        |||  |||  |||||||||||| ||||||||||| |||||||  |||||||||||||||||| | |||  |||||||| ||| ||||| | |||||    
T  1854051 aaaatcatgttttcgattgtataatctgaaatgtccctaaccccacgtaaggtgcgcaacttcctttaatttttcccaatatcgtataaatttgtattac 1854150  T
Q  209 gtaatcc 215  Q
     ||||||    
T  1854151 ataatcc 1854157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 14 - 214
Target Start/End: Complemental strand, 21483703 - 21483501
Alignment:
Q  14 tgtggtttctgattatgaacacaaagacgcctatttatagaggtccatgggtgtcctagaccacataaactgtctgtgca-tgtggaccacatgaaaaaa 112  Q
    ||||||||||| |||||||||||||  | ||||||||||||||||  |||| ||| | ||||||| ||| |||| || || |||||||||||||||||||    
T  21483703 tgtggtttctggttatgaacacaaaatcacctatttatagaggtctctgggcgtcgtggaccacagaaattgtcggtccaatgtggaccacatgaaaaaa 21483604  T
Q  113 -tcaaatttcagattgtataatccgaaatgtccctcaccccacagaaggtgcgcaacttccttcagtttggcccaatattgtaaaaattcggattacgta 211  Q
     |||  ||   ||||||||||||||| |||||| | ||||||||||||||||| | ||||||||| |||||||   ||||||||||||||||||||| ||    
T  21483603 atcatgttctggattgtataatccgagatgtccgttaccccacagaaggtgcgtagcttccttcaatttggccttgtattgtaaaaattcggattacata 21483504  T
Q  212 atc 214  Q
    |||    
T  21483503 atc 21483501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 14 - 147
Target Start/End: Complemental strand, 37126456 - 37126321
Alignment:
Q  14 tgtggtttctgattatgaacacaaagacgcctatttatagaggtccatgggtgtcctagaccacataaactgtctgtgc-atgtggaccacatgaaaaaa 112  Q
    ||||||||||| ||||||| |||  ||| |||||||||||||||   |||| ||||| ||||||| |||||||| |||| | |||||| |||  ||||||    
T  37126456 tgtggtttctggttatgaaaacagggacacctatttatagaggtatctgggcgtcctggaccacagaaactgtcagtgcaaagtggacaacaaaaaaaaa 37126357  T
Q  113 -tcaaatttcagattgtataatccgaaatgtccctc 147  Q
     |||  ||||||||| ||||||| ||||||||||||    
T  37126356 ttcatgtttcagattatataatctgaaatgtccctc 37126321  T

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Target: scaffold0127 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 14 - 221
Target Start/End: Complemental strand, 36800 - 36593
Alignment:
Q  14 tgtggtttctgattatgaacacaaagacgcctatttatagaggtccatgggtgtcctagaccacataaactgtctgtgca-tgtggaccacatgaaaaaa 112  Q
    |||||||| |||||||||||| | |||  ||||||||||||||||| |||| ||||| ||||||| ||| | || ||||| |||  ||||||||||||||    
T  36800 tgtggttt-tgattatgaacatagagaaacctatttatagaggtccttgggcgtcctggaccacagaaattatcggtgcaatgttaaccacatgaaaaaa 36702  T
Q  113 -tcaaatttcagattgtataatccgaaatgtccctcaccccacagaaggtgcgcaacttccttcagtttggcccaatattgtaaaaattcggattacgta 211  Q
     |||  ||||||||||||||||| ||  |||||||||||||||| ||| || ||| ||||||||| || ||||||||||||||||||||| |||||| ||    
T  36701 atcatgtttcagattgtataatctgag-tgtccctcaccccacaaaagttgtgcagcttccttcacttgggcccaatattgtaaaaattccgattacata 36603  T
Q  212 atccataaac 221  Q
    ||||| ||||    
T  36602 atccaaaaac 36593  T

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Target: scaffold0064 (Bit Score: 72; Significance: 6e-33; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 12 - 221
Target Start/End: Complemental strand, 61520 - 61309
Alignment:
Q  12 tttgtggtttctgattatgaacacaaagacgcctatttatagaggtccatgggtgtcctagaccacataaactgtctgtgca-tgtggaccacatgaaaa 110  Q
    ||||| ||| ||| ||||||| |||  ||| | |||||||||| |||| |||| |||||||||||||||||||||| ||||| ||||||||| |||||||    
T  61520 tttgttgttactggttatgaaaacagggacacttatttatagaagtccctgggcgtcctagaccacataaactgtcggtgcaatgtggaccaaatgaaaa 61421  T
Q  111 aatcaaatttcag-attgtataatccgaaatgtccctcaccccacagaaggtgcgcaacttccttcagtttggcccaatattgtaaaaattcggattacg 209  Q
    ||  ||  ||| | |||  ||||| || | |||||||||||||| |||||||||||||||||||| |||||  |||||||| ||||||||| |||||||     
T  61420 aaaaaatgttccggattacataatgcggagtgtccctcaccccatagaaggtgcgcaacttcctttagtttaccccaatatcgtaaaaatttggattaca 61321  T
Q  210 taatccataaac 221  Q
    |||| |||||||    
T  61320 taatacataaac 61309  T

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Target: chr1 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 14 - 186
Target Start/End: Original strand, 41368183 - 41368356
Alignment:
Q  14 tgtggtttctgattatgaacacaaagacgcctatttatagaggtccatgggtgtcctagaccacataaactgtctgtgca-tgtggaccacatgaaaaaa 112  Q
    |||||||| |||||||||||| | |||  ||||||||||||||||| |||||||||| ||||| | ||| | || ||||| |||  ||||||||||||||    
T  41368183 tgtggttt-tgattatgaacatagagaaacctatttatagaggtccttgggtgtcctggaccatagaaattatcggtgcaatgttaaccacatgaaaaaa 41368281  T
Q  113 -tcaaatttcagattgtataatccgaaatgtccctcaccccacagaaggtgcgcaacttccttcagtttggccca 186  Q
     |||  ||||||||||||||||| |||||||||||||||||||||||| || ||| ||||||||| || ||||||    
T  41368282 atcatgtttcagattgtataatctgaaatgtccctcaccccacagaagttgtgcagcttccttcacttgggccca 41368356  T

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Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 14 - 176
Target Start/End: Original strand, 23186238 - 23186402
Alignment:
Q  14 tgtggtttctgattatgaacacaaagacgcctatttatagaggtccatgggtgtcctagaccacataaactgtctgtgca-tgtggaccacatgaaaaaa 112  Q
    ||||||||||| |||||||||||  ||| ||||||||||||||||  |||| | |||  |||| ||||| |||| ||||| |||||||||||||||||||    
T  23186238 tgtggtttctggttatgaacacagggacacctatttatagaggtctttgggcggcctgaaccatataaattgtcggtgcaatgtggaccacatgaaaaaa 23186337  T
Q  113 -tcaaatttcagattgtataatccgaaatgtccctcaccccacagaaggtgcgcaacttccttca 176  Q
     |||  |||| |||||||||||| |||||||||||||||| ||| |||||| |||| ||||||||    
T  23186338 atcatgtttcggattgtataatctgaaatgtccctcaccctacataaggtgtgcaatttccttca 23186402  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 123 - 207
Target Start/End: Complemental strand, 39806920 - 39806836
Alignment:
Q  123 gattgtataatccgaaatgtccctcaccccacagaaggtgcgcaacttccttcagtttggcccaatattgtaaaaattcggatta 207  Q
    |||| ||||||| ||||||||||||||||||   |||||||||||||||||||| ||| ||||| ||| ||| ||||| ||||||    
T  39806920 gattatataatctgaaatgtccctcaccccaagtaaggtgcgcaacttccttcatttttgcccattatcgtataaatttggatta 39806836  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 176
Target Start/End: Complemental strand, 12692496 - 12692356
Alignment:
Q  39 gacgcctatttatagaggtccatgggtgtcctagaccacataaactgtctgtgc-atgtggaccacatg--aaaaaatcaaatttcagattgtataatcc 135  Q
    ||||||||||||||||||||  | || ||| | ||||||| ||| |||| |||| ||||  ||||||||  |||||||||  |||| |||| |||||||     
T  12692496 gacgcctatttatagaggtctctaggcgtcttggaccacagaaaatgtcggtgcaatgtaaaccacatgaaaaaaaatcatgtttcggattatataatct 12692397  T
Q  136 gaaatgtccctcaccccacagaaggtgcgcaacttccttca 176  Q
    |||||||||| ||||| ||| ||||| ||||  ||||||||    
T  12692396 gaaatgtcccgcaccctacataaggtacgcagtttccttca 12692356  T

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Target: chr8 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 138 - 215
Target Start/End: Complemental strand, 4258593 - 4258516
Alignment:
Q  138 aatgtccctcaccccacagaaggtgcgcaacttccttcagtttggcccaatattgtaaaaattcggattacgtaatcc 215  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||||| ||||||    
T  4258593 aatgtccctcaccccacagaaggtgcgcaacttccttcagtttaccccaattttgtaaaaattcggattacataatcc 4258516  T

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Target: scaffold0054 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 118 - 214
Target Start/End: Complemental strand, 17442 - 17346
Alignment:
Q  118 tttcagattgtataatccgaaatgtccctcaccccacagaaggtgcgcaacttccttcagtttggcccaatattgtaaaaattcggattacgtaatc 214  Q
    |||| |||||||||||| ||||| ||||||||||||||||||| ||||| |||||||||||||| |||| |||  ||||||||||||| || |||||    
T  17442 tttcggattgtataatctgaaatatccctcaccccacagaaggagcgcagcttccttcagtttgacccagtatcataaaaattcggatgacataatc 17346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0210 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 164
Target Start/End: Complemental strand, 6748 - 6624
Alignment:
Q  43 cctatttatagaggtccatgggtgtcctagaccacataaactgtctgtgca-tgtggaccacatgaaaaaa--tcaaatttcagattgtataatccgaaa 139  Q
    ||||||||||||||||  |||||||| | ||||||| ||| |||| ||||| || |||||||| |||||||  |||  ||||||||| || | || ||||    
T  6748 cctatttatagaggtctctgggtgtcttggaccacaaaaattgtcggtgcaatgcggaccacaagaaaaaaaatcatgtttcagattataaattctgaaa 6649  T
Q  140 tgtccctcaccccacagaaggtgcg 164  Q
    |||||||||||||||| ||| ||||    
T  6648 tgtccctcaccccacataagatgcg 6624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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