View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2216_low_14 (Length: 222)
Name: NF2216_low_14
Description: NF2216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2216_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 16 - 207
Target Start/End: Complemental strand, 37902700 - 37902509
Alignment:
| Q |
16 |
aattgaagtttgaacttcttgtctttgaaactgagttgttcatattctattttctatatattacggggatgaaaatggaaaatgagatctttgttttgtg |
115 |
Q |
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| T |
37902700 |
aattgaagtttgaacttcttgtctttgaaactgagttgttcatattctattttctatatattacggggatgaaaatggaaaatgagatctttgttttgtg |
37902601 |
T |
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| Q |
116 |
ttgtatgcaggtttacttgggtgagcaatatgtaaacaatcctaaactttctgatgtcacattcatagttgaaggtaaataagctgccacag |
207 |
Q |
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| T |
37902600 |
ttgtatgcaggtttacttgggtgagcaatacgtaaacaatcctaaactttctgatgtcacattcatagttgaaggtaaataagctgccacag |
37902509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 16 - 207
Target Start/End: Complemental strand, 37909211 - 37909020
Alignment:
| Q |
16 |
aattgaagtttgaacttcttgtctttgaaactgagttgttcatattctattttctatatattacggggatgaaaatggaaaatgagatctttgttttgtg |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37909211 |
aattgaagtttgaacttcttgtctttgaaactgagttgttcatattctattttctatatattacggggatgaaaatggaaaatgagatctttgttttgtg |
37909112 |
T |
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| Q |
116 |
ttgtatgcaggtttacttgggtgagcaatatgtaaacaatcctaaactttctgatgtcacattcatagttgaaggtaaataagctgccacag |
207 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37909111 |
ttgtatgcaggtttacttgggtgagcaatacgtaaacaatcctaaactttctgatgtcacattcatagttgaaggtaaataagctgccacag |
37909020 |
T |
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