View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2216_low_7 (Length: 292)
Name: NF2216_low_7
Description: NF2216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2216_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 29361375 - 29361647
Alignment:
| Q |
1 |
tctaaagttgaggagcagttnnnnnnntttgtggaaatttaatagaaattacacattaatgttcctttaaagctgtctcaaatgcaatcatattccaagt |
100 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29361375 |
tctaaagttgaggagcagtttaaaaaatttgtggaaatttaatagaaattacacattaatgttcctttaaagctgtctcaaatgcaatcatattccaagt |
29361474 |
T |
|
| Q |
101 |
tcttaaaa-caaattctgacaaataaaggaaggattgatgacaatgatacaatagctttgaccaaggaatatagtcctataattaagatgaaattgcctt |
199 |
Q |
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|||||||| |||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29361475 |
tcttaaaaacaaattctgacaaataaaagaaggcttgatgacaatgatacaatagctttgaccaaggaatatagtcctataattaagatgaaattgcctt |
29361574 |
T |
|
| Q |
200 |
ccaaactcaaagaccctaaaagtttttcaattccatgcggcactggtaacatgaggtttgatcgtgctttaggt |
273 |
Q |
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||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
29361575 |
ccaaactcaaagaccct-aaagtttttcaattccatgtggcactggtaacatgaggtttgatcgtgctttaggt |
29361647 |
T |
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