View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2217_high_1 (Length: 420)
Name: NF2217_high_1
Description: NF2217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2217_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-122; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 16 - 403
Target Start/End: Complemental strand, 31982108 - 31981725
Alignment:
| Q |
16 |
ataaagcaactacatttaaacttgaaaacaataaacccaagtgaaaattgtgagaaattaataggnnnnnnnnnnnntgcaggttttaattgaagnnnnn |
115 |
Q |
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| T |
31982108 |
ataaagcaactacatttaaacttaaaaacaataaacccaagtgaaaattgggagaaattaataggaaaaacaaaaaatgcaggttttaattgaagaaaaa |
31982009 |
T |
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| Q |
116 |
nntgagaataccagaagaagaagaagatgaagcggcagagcaagagagtgtaaacttggtgagagagggttttggtttgaatggagaagaaagaaggttg |
215 |
Q |
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| T |
31982008 |
aatgagaataccagaagaagaaga---tgaagcggcagagcaagtgagtgtaaacttggtgagagagggttttggtttgaatggagaagaaagaaggttg |
31981912 |
T |
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| Q |
216 |
aagcaattggattgttgaaataaggaggaagatttccatcctaaaccactgtacaatagaacaaattcacaagtcagaatctcaattcaattaatttc-- |
313 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31981911 |
aagcaattggattgttgaaataagggggaagatttccatcctaaaccactgtacaatagaacaaattcacaagtcagaatctcaattcaattaatttcag |
31981812 |
T |
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| Q |
314 |
nnnnnnnnnnnnnnnnnaaaggaaaacctgttgatggaagtaggaatggtttccatgaggaggaattggagtgatgagagaaatttcttt |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
31981811 |
agagagagagagagagtgaaggaaaacctgttgatggaagtaggaatggtttccat---gaggaattggagtgatgagagaaatttcttt |
31981725 |
T |
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