View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2217_high_3 (Length: 269)
Name: NF2217_high_3
Description: NF2217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2217_high_3 |
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| [»] scaffold0031 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 161; Significance: 6e-86; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 11 - 252
Target Start/End: Original strand, 2508503 - 2508744
Alignment:
| Q |
11 |
cagagaatcaaagagcaggaaccaaacacaaccagtcacgtcaaaaccacatattcaaccagatcgatgggtcaacataatagtcaccaaccataccctt |
110 |
Q |
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| T |
2508503 |
cagagaatcaaatagtaggaaccaaacacaaccagtcacgtcagaaccacatattgaaccagattgatgagtcaacataatagtcaccaaccataccctt |
2508602 |
T |
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| Q |
111 |
tcgggtttaaagaaccaacataccctttcgggcttatgaaaacaaccgccagccaggaaccgaacccaccccagtctctgaaagaaaaacgaacnnnnnn |
210 |
Q |
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| T |
2508603 |
tcgggtttaaagaaccaacataccatttcgggtttatgaaaacaaccacaagccaggaactgaacccaccccactctctgaaagaaaaacgaacgaaaag |
2508702 |
T |
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| Q |
211 |
ngcaacctacaatgaagaaggaacaaccgcgattgtgaaaca |
252 |
Q |
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| T |
2508703 |
agcaacctacgacgaagaaggaacaaccgcgattgtaaaaca |
2508744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 94 - 157
Target Start/End: Complemental strand, 7692907 - 7692844
Alignment:
| Q |
94 |
tcaccaaccataccctttcgggtttaaagaaccaacataccctttcgggcttatgaaaacaacc |
157 |
Q |
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| T |
7692907 |
tcaccaaccataccgtttcgggttaaaagaaccaacaaaccctttcgggtttacgaaaccaacc |
7692844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 49
Target Start/End: Complemental strand, 7692986 - 7692946
Alignment:
| Q |
11 |
cagagaatcaaagag--caggaaccaaacacaaccagtcac |
49 |
Q |
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| T |
7692986 |
cagagaatcaaagagaccaggaaccaaacacaaccagtcac |
7692946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 14 - 204
Target Start/End: Original strand, 44226418 - 44226610
Alignment:
| Q |
14 |
agaatcaaagag--caggaaccaaacacaaccagtcacgtcaaaaccacatattcaaccagatcgatgggtcaacataatagtcaccaaccatacccttt |
111 |
Q |
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|||||||||||| |||||||||| |||||||| || ||||| ||||||||||| |||||||||||| |||||||| ||||||| ||||||| ||||||| |
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| T |
44226418 |
agaatcaaagagaacaggaaccaaccacaaccaatctcgtcataaccacatattgaaccagatcgataggtcaacacaatagtcgccaaccaaacccttt |
44226517 |
T |
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| Q |
112 |
cgggtttaaagaaccaacataccctttcgggcttatgaaaacaaccgccagccaggaaccgaacccaccccagtctctgaaagaaaaacgaac |
204 |
Q |
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| T |
44226518 |
ctggttaaaagaaccaacataccctttcgagtttacgaaaccaaccacaagtcagtaaccgaaatcaccccagtctctgaaagaaaaacgaac |
44226610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 99 - 191
Target Start/End: Complemental strand, 1863227 - 1863136
Alignment:
| Q |
99 |
aaccataccctttcgggtttaaagaaccaacataccctttcgggcttatgaaaacaaccgccagccaggaaccgaacccaccccagtctctga |
191 |
Q |
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| T |
1863227 |
aaccataccctttcgggttaaaagaaccaacataccctttcgagtttacgaaaccaaccacaagtca-gaatcgaaaccaccccaatctctga |
1863136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0031 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0031
Description:
Target: scaffold0031; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 71
Target Start/End: Original strand, 96120 - 96182
Alignment:
| Q |
11 |
cagagaatcaaagag--caggaaccaaacacaaccagtcacgtcaaaaccacatattcaacca |
71 |
Q |
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| T |
96120 |
cagagaatcaaagagaacaggaaccaaacacaatcggtcacgtcaaaaccacatattgaacca |
96182 |
T |
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