View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2217_low_9 (Length: 217)

Name: NF2217_low_9
Description: NF2217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2217_low_9
NF2217_low_9
[»] chr6 (2 HSPs)
chr6 (93-203)||(30372873-30372981)
chr6 (14-95)||(30373012-30373093)
[»] chr2 (3 HSPs)
chr2 (12-95)||(3769267-3769350)
chr2 (148-203)||(3769095-3769150)
chr2 (147-203)||(44911680-44911736)
[»] chr1 (2 HSPs)
chr1 (12-95)||(3928340-3928423)
chr1 (147-203)||(3928566-3928622)
[»] chr4 (2 HSPs)
chr4 (12-91)||(6353697-6353769)
chr4 (147-203)||(6353916-6353972)
[»] chr3 (1 HSPs)
chr3 (16-85)||(36501562-36501632)


Alignment Details
Target: chr6 (Bit Score: 92; Significance: 7e-45; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 93 - 203
Target Start/End: Complemental strand, 30372981 - 30372873
Alignment:
Q  93 ttctcttctttgtcacgagagaaaaagggttactcacaacaacaccatagaaaaagggtcaggaatttaactaccatagaacctccaatttaccgttcat 192  Q
    ||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  30372981 ttctcttctttgtcacgaga--aaaagggttactcacaacaacaccatagaaaaagggtcaggaatttaactaccatagatcctccaatttaccgttcat 30372884  T
Q  193 gccattcatct 203  Q
    | |||||||||    
T  30372883 gtcattcatct 30372873  T

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Target: chr6; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 14 - 95
Target Start/End: Complemental strand, 30373093 - 30373012
Alignment:
Q  14 ttacaacccttggatcaatcttaacggttcaaaatgaaactttacttctgtggtctctcacctctggattatcgcttctttc 95  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  30373093 ttacaacccttggatcaatcttaacggttcaaaatgaaactttacttatgtggtctctcacctctggattatcgcttctttc 30373012  T

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Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 12 - 95
Target Start/End: Complemental strand, 3769350 - 3769267
Alignment:
Q  12 agttacaacccttggatcaatcttaacggttcaaaatgaaactttacttctgtggtctctcacctctggattatcgcttctttc 95  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  3769350 agttacaacccttggatcaatcttaacggttcaaaatgaaactttacttctgtggtctctcacctctgaattatcgcttctttc 3769267  T

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Target: chr2; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 148 - 203
Target Start/End: Complemental strand, 3769150 - 3769095
Alignment:
Q  148 gggtcaggaatttaactaccatagaacctccaatttaccgttcatgccattcatct 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3769150 gggtcaggaatttaactaccatagaacctccaatttaccgttcatgccattcatct 3769095  T

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Target: chr2; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 147 - 203
Target Start/End: Original strand, 44911680 - 44911736
Alignment:
Q  147 agggtcaggaatttaactaccatagaacctccaatttaccgttcatgccattcatct 203  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  44911680 agggtcaggaatttaactaccataaaacatccaatttaccgttcatgccattcatct 44911736  T

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Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 12 - 95
Target Start/End: Original strand, 3928340 - 3928423
Alignment:
Q  12 agttacaacccttggatcaatcttaacggttcaaaatgaaactttacttctgtggtctctcacctctggattatcgcttctttc 95  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  3928340 agttacaacccttggatcaatcttaacggttcaaaatgaaactttacttttgtggtctctcacctctggattatcgcttctttc 3928423  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 147 - 203
Target Start/End: Original strand, 3928566 - 3928622
Alignment:
Q  147 agggtcaggaatttaactaccatagaacctccaatttaccgttcatgccattcatct 203  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  3928566 agggtcaggaatttaactaccatagaaccttcaatttaccgttcatgtcattcatct 3928622  T

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Target: chr4 (Bit Score: 50; Significance: 8e-20; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 12 - 91
Target Start/End: Original strand, 6353697 - 6353769
Alignment:
Q  12 agttacaacccttggatcaatcttaacggttcaaaatgaaactttacttctgtggtctctcacctctggattatcgcttc 91  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||    
T  6353697 agttataacccttggatcaatcttaacggttcaaaatgaaactttac-------gtctctcacctctggattatcgcttc 6353769  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 147 - 203
Target Start/End: Original strand, 6353916 - 6353972
Alignment:
Q  147 agggtcaggaatttaactaccatagaacctccaatttaccgttcatgccattcatct 203  Q
    ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  6353916 agggtcatgaattaaactaccatagaacctccaatttaccgttcatgccattcatct 6353972  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 36501632 - 36501562
Alignment:
Q  16 acaacccttggatcaatcttaacggttcaaaatgaaactt-tacttctgtggtctctcacctctggattat 85  Q
    ||||||||||||||||||||||| |||||| ||||||||| ||||| ||||| |||||   ||||||||||    
T  36501632 acaacccttggatcaatcttaactgttcaagatgaaacttgtacttatgtggcctctcgtttctggattat 36501562  T

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