View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2218-Insertion-1 (Length: 769)
Name: NF2218-Insertion-1
Description: NF2218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2218-Insertion-1 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 742; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 742; E-Value: 0
Query Start/End: Original strand, 8 - 769
Target Start/End: Complemental strand, 31322266 - 31321506
Alignment:
| Q |
8 |
aatctagtatccaaatactcatacatcggacttgcaaatatctgacagaaataaaacacaggttattaaacacaaattgaataaaacatttaagtgtagc |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31322266 |
aatctagtatccaaatactcatacatcggacttgcaaatatctgacagaaataaaacacaggttattaaacacaaattgaataaaacatttaagtgtagc |
31322167 |
T |
|
| Q |
108 |
aaaagatttagtttagatttatgtacatgtaatgcaatgactgattgaaggaaggctgtaatattggccaaagctttcacccaagctggaccgttcacac |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31322166 |
aaaagatttagtttagatttatgtacatgtaatgcaatgactgattgaaggaaggctgtaatattggccaaagctttcacccaagctggaccgttcacac |
31322067 |
T |
|
| Q |
208 |
tattcagcaaataggtttctgtcttatttccataagcccagtatcctacaaaggtaaccatgtacattggtacaagtccaatggtaaactgaaaccacag |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31322066 |
tattcagcaaataggtttctgtcttatttccataagcccagtatcctgcaaaggtaaccatgtacattggtacaagtccaatggtaaactgaaaccacag |
31321967 |
T |
|
| Q |
308 |
ggatttcatcatgttcttgacaactggttgcttaattgtggcctgcaagttacattaacaaaataaatctcagttttgtattaagcttgaaacttaataa |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
31321966 |
ggatttcatcatgttcttgacaactggttgcttaattgtggcctgcaagttacattaacaaa-taaatctcagttttgtattaaacttgaaacttaataa |
31321868 |
T |
|
| Q |
408 |
gatatgcaaatatataaacttctatctgacctgtatctcaggaagcatgccggtattgtatgcgaacactagactagcagacgccccaattgttgtgaat |
507 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31321867 |
gatatgcaaatatataagcttctatctgacctgtatctcaggaagcatgccggtattgtatgcgaacactagactagcagacgccccaattgttgtgaat |
31321768 |
T |
|
| Q |
508 |
attttagttacaccatgttctggaacagcgtaatctcgagcaggtgaattcattcctggcaatgtattgttggttagttgtagaaatgtgtatcaactca |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31321767 |
attttagttacaccatgttctggaacagcgtaatctcgagcaggtgaattcattcctggcaatgtattgttggttagttgtagaaatgtgtatcaactca |
31321668 |
T |
|
| Q |
608 |
aatcaaactatatattcagatttataaagttaacagctaagaattttttataatttaaacattctgtaatatgcttcaaactgtatcctagtgtataact |
707 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31321667 |
aatcaaactatatattcagatttataaagttaacagctaagaattttttataatttaaacattctgtaatatgcttcaaactgtatcctagtgtataact |
31321568 |
T |
|
| Q |
708 |
gatggtagttaattactacaagtgaatgaatgattaatttgcaatcacagaaatgagatatt |
769 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31321567 |
gatggtagttaattactacaagtgaatgaatgattaatttgcaatcacagaaatgagatatt |
31321506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 75; Significance: 4e-34; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 131 - 337
Target Start/End: Complemental strand, 34978473 - 34978267
Alignment:
| Q |
131 |
tacatgtaatgcaatgactgattgaaggaaggctgtaatattggccaaagctttcacccaagctggaccgttcacactattcagcaaataggtttctgtc |
230 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||||||||||| |||| | |||||||||| |||||| || ||| ||||||||||| | |||| |||| |
|
|
| T |
34978473 |
tacatgcaatgcaatgactgattgaagaaaggctgtaatatttgccacaactttcacccagattggacccttgacattattcagcaaaaaagtttgtgtc |
34978374 |
T |
|
| Q |
231 |
ttatttccataagcccagtatcctacaaaggtaaccatgtacattggtacaagtccaatggtaaactgaaaccacagggatttcatcatgttcttgacaa |
330 |
Q |
| |
|
| ||||||||||||||||||| |||||||||||| || | ||| | || ||||| |||||||||||| | || | ||||||||||||||| |||| |
|
|
| T |
34978373 |
gaagatccataagcccagtatcctgcaaaggtaaccagatataatggcagaactccaacggtaaactgaaagtatagcgctttcatcatgttctttacaa |
34978274 |
T |
|
| Q |
331 |
ctggttg |
337 |
Q |
| |
|
||||||| |
|
|
| T |
34978273 |
ctggttg |
34978267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 436 - 513
Target Start/End: Complemental strand, 34978153 - 34978076
Alignment:
| Q |
436 |
acctgtatctcaggaagcatgccggtattgtatgcgaacactagactagcagacgccccaattgttgtgaatatttta |
513 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||||||||| ||| |||| || ||||||||||| || ||||||||| |
|
|
| T |
34978153 |
acctgtatctcaggaagcattcccgtattgtatgcgaacacgagattagcggatgccccaattgtcgtaaatatttta |
34978076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 14 - 50
Target Start/End: Complemental strand, 34978992 - 34978956
Alignment:
| Q |
14 |
gtatccaaatactcatacatcggacttgcaaatatct |
50 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| |
|
|
| T |
34978992 |
gtatccaaatactcgtacatcggacttgcaaatatct |
34978956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University