View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2218-Insertion-10 (Length: 154)
Name: NF2218-Insertion-10
Description: NF2218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2218-Insertion-10 |
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Alignment Details
Target: chr7 (Bit Score: 126; Significance: 3e-65; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 126; E-Value: 3e-65
Query Start/End: Original strand, 8 - 137
Target Start/End: Original strand, 32910303 - 32910432
Alignment:
| Q |
8 |
ctactcttgttaatgcctgcaatcacttcctcacaatatttaggaaacaacctactcactaatcgaaagattttccaacaacaagaaacaatttcctctt |
107 |
Q |
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| T |
32910303 |
ctactcttgttaatgcctgcaatcacttcctcacaatatttaggaaacaacctactcactaatcgaaagattttccaaaaacaagaaacaatttcctctt |
32910402 |
T |
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| Q |
108 |
atgctgtcgtgtttgatgctggtagcactg |
137 |
Q |
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| T |
32910403 |
atgctgtcgtgtttgatgctggtagcactg |
32910432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 89; E-Value: 3e-43
Query Start/End: Original strand, 9 - 137
Target Start/End: Original strand, 32932156 - 32932284
Alignment:
| Q |
9 |
tactcttgttaatgcctgcaatcacttcctcacaatatttaggaaacaacctactcactaatcgaaagattttccaacaacaagaaacaatttcctctta |
108 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | | ||||| |
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| T |
32932156 |
tactcttgttaatgcctgcaatcacttcctcccaatatttaggaaacaacctactcactaatcgaaagattttccaaaaacaagaaaccttaacatctta |
32932255 |
T |
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| Q |
109 |
tgctgtcgtgtttgatgctggtagcactg |
137 |
Q |
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| T |
32932256 |
cgctgtcatatttgatgctggtagcactg |
32932284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 60 - 137
Target Start/End: Original strand, 32921744 - 32921821
Alignment:
| Q |
60 |
tactcactaatcgaaagattttccaacaacaagaaacaatttcctcttatgctgtcgtgtttgatgctggtagcactg |
137 |
Q |
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| T |
32921744 |
tactcactaaccgtaagattttcccaaaacaagaaccaatttcctcttatgctgttgtgtttgatgctggtagcactg |
32921821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 8 - 135
Target Start/End: Original strand, 32940383 - 32940510
Alignment:
| Q |
8 |
ctactcttgttaatgcctgcaatcacttcctcacaatatttaggaaacaacctactcactaatcgaaagat-tttccaacaacaagaaacaatttcctct |
106 |
Q |
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| T |
32940383 |
ctactcttcttgatgcctacaatctcttcctcccaatatcttggaaacaatatactcaccaatcgtaaaatatttccaa-aacaagaaactctaacctcg |
32940481 |
T |
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| Q |
107 |
tatgctgtcgtgtttgatgctggtagcac |
135 |
Q |
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| T |
32940482 |
tacgctgtcgtctttgatgctggtagcac |
32940510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 2e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 60 - 137
Target Start/End: Original strand, 11822264 - 11822341
Alignment:
| Q |
60 |
tactcactaatcgaaagattttccaacaacaagaaacaatttcctcttatgctgtcgtgtttgatgctggtagcactg |
137 |
Q |
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|||||||||| || |||||||||| | |||||||||||||||||||||| ||||| |||||||||||||||||||||| |
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| T |
11822264 |
tactcactaaccgtaagattttcccaaaacaagaaacaatttcctcttacgctgttgtgtttgatgctggtagcactg |
11822341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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