View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2218-Insertion-12 (Length: 91)
Name: NF2218-Insertion-12
Description: NF2218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2218-Insertion-12 |
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| [»] chr4 (7 HSPs) |
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| [»] scaffold0294 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 81; Significance: 1e-38; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 1e-38
Query Start/End: Original strand, 7 - 91
Target Start/End: Original strand, 11787789 - 11787873
Alignment:
| Q |
7 |
attgcagggactaggcttgttaacgttgtcggctatgcttccttccatcacattttgttctcctcagtcacaagttatcttattc |
91 |
Q |
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| T |
11787789 |
attgcagggactaggcttgttaacgttgtcggctatgctgccttccatcacattttgttctcctcagtcacaagttatcttattc |
11787873 |
T |
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Target: chr4; HSP #2
Raw Score: 81; E-Value: 1e-38
Query Start/End: Original strand, 7 - 91
Target Start/End: Original strand, 11799956 - 11800040
Alignment:
| Q |
7 |
attgcagggactaggcttgttaacgttgtcggctatgcttccttccatcacattttgttctcctcagtcacaagttatcttattc |
91 |
Q |
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| T |
11799956 |
attgcagggactaggcttgttaacgttgtcggctatgctgccttccatcacattttgttctcctcagtcacaagttatcttattc |
11800040 |
T |
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Target: chr4; HSP #3
Raw Score: 56; E-Value: 8e-24
Query Start/End: Original strand, 8 - 91
Target Start/End: Original strand, 11783959 - 11784042
Alignment:
| Q |
8 |
ttgcagggactaggcttgttaacgttgtcggctatgcttccttccatcacattttgttctcctcagtcacaagttatcttattc |
91 |
Q |
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| T |
11783959 |
ttgcagggactaggcttgttaacattgtcggctatgctgccttccattacaatttattctcctcagtcacaagtaatgttattc |
11784042 |
T |
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Target: chr4; HSP #4
Raw Score: 45; E-Value: 3e-17
Query Start/End: Original strand, 11 - 91
Target Start/End: Original strand, 11697775 - 11697855
Alignment:
| Q |
11 |
cagggactaggcttgttaacgttgtcggctatgcttccttccatcacattttgttctcctcagtcacaagttatcttattc |
91 |
Q |
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| T |
11697775 |
cagggactaggcttgttaacattatcagctatgcttccttcactcacatcttgttctactcaatcacaagtaatcttattc |
11697855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 45; E-Value: 3e-17
Query Start/End: Original strand, 11 - 91
Target Start/End: Original strand, 11707483 - 11707563
Alignment:
| Q |
11 |
cagggactaggcttgttaacgttgtcggctatgcttccttccatcacattttgttctcctcagtcacaagttatcttattc |
91 |
Q |
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| T |
11707483 |
cagggactaggcttgttaacattatcagctttgctcccttcactcacattttgttctcctcaatcacaagtaatcttattc |
11707563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 44; E-Value: 1e-16
Query Start/End: Original strand, 11 - 90
Target Start/End: Original strand, 11676260 - 11676339
Alignment:
| Q |
11 |
cagggactaggcttgttaacgttgtcggctatgcttccttccatcacattttgttctcctcagtcacaagttatcttatt |
90 |
Q |
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| T |
11676260 |
cagggactaggcttgttaacattatcagctatgcttccttctctcacatcctgttctcctgagtcacaagtaatcttatt |
11676339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 44; E-Value: 1e-16
Query Start/End: Original strand, 11 - 90
Target Start/End: Original strand, 11684539 - 11684618
Alignment:
| Q |
11 |
cagggactaggcttgttaacgttgtcggctatgcttccttccatcacattttgttctcctcagtcacaagttatcttatt |
90 |
Q |
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| T |
11684539 |
cagggactaggcttgttaacattatcagctatgcttccttctctcacatcctgttctcctgagtcacaagtaatcttatt |
11684618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 29; Significance: 0.0000001; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 91
Target Start/End: Original strand, 19547 - 19627
Alignment:
| Q |
11 |
cagggactaggcttgttaacgttgtcggctatgcttccttccatcacattttgttctcctcagtcacaagttatcttattc |
91 |
Q |
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| T |
19547 |
cagggactaggcttgttaacactatcaactattcttccttcactcgcatcttgttctactcaatcacaagtaatcttattc |
19627 |
T |
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