View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2218-Insertion-2 (Length: 765)
Name: NF2218-Insertion-2
Description: NF2218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2218-Insertion-2 |
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Alignment Details
Target: chr8 (Bit Score: 441; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 152 - 660
Target Start/End: Complemental strand, 36818545 - 36818037
Alignment:
| Q |
152 |
gtaagaaacttgaaaaggtactaaaacaacgtaataaattattacattatacttcaattaaggacaataggatgagtttggtccaccggaccagttcgtt |
251 |
Q |
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| T |
36818545 |
gtaagaacattgaaaaagtactaaaacaacgtaataaattattacattatacttcaattaaagacaatacgatgagtttggtccatcggaccagttcgtt |
36818446 |
T |
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| Q |
252 |
taatttgtcttttataaaaaggattgagattttgaattcgctactattagttgactgatccaacttatcccactagaataacgcggtggaggcaaggcag |
351 |
Q |
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| T |
36818445 |
taatttgtcttctataaaaagggttgagattttgaattcgcttctattagttgactgatccaacctatcccactagaataacgcggtggaggcaagacag |
36818346 |
T |
|
| Q |
352 |
ggctggccggcattccaggttagaaaactcttcttttacacttacttttacttataagtcactatattttctagttttcttctctataagtagagataac |
451 |
Q |
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| T |
36818345 |
ggctggccggcattccaggttagaaaactcttcttttacacttacttttacttataagtcactatattttctagttttcttctctataagtagagataac |
36818246 |
T |
|
| Q |
452 |
aaatccttcaatttaatcattttggtttcacaattttagtcttaagtttctaatagtttgtcaattggcgaattcgtgaacattttattttggttttaat |
551 |
Q |
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| T |
36818245 |
aaatccttaaatttaatcattttggtttcacaattttagtcttaagtttctaatagtttgtcaattggcgaattcgcgaacattttattctggttttaat |
36818146 |
T |
|
| Q |
552 |
gttggattaatataaatttttaaagtatttaacatggatgtctgaatgataatttccaattttttagtagacttattagtaacatattttggtgtcctta |
651 |
Q |
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| T |
36818145 |
gttggattaatgtaaatttttaaagtatttaacatggatgtctgaatgataatttccaattttttagtagactcgttagtaacatattttggtgtcctta |
36818046 |
T |
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| Q |
652 |
aattggttg |
660 |
Q |
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||||||||| |
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| T |
36818045 |
aattggttg |
36818037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 130; E-Value: 6e-67
Query Start/End: Original strand, 8 - 156
Target Start/End: Complemental strand, 36819297 - 36819148
Alignment:
| Q |
8 |
gttattcataaaatttactattatttccatcttt-aagtgacacaagttttatctctgtcttgtcaaaaaattaaaacatggttactctgagcaataaac |
106 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
36819297 |
gttattcataaaatttactattatttccatcttttaagtgacacaagttttctctctgtcttgtcaaaaaaataaaacatggttactctgagcaataaac |
36819198 |
T |
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| Q |
107 |
acgatatcatcccattagattttgtttgaaaattgagttttggaggtaag |
156 |
Q |
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| T |
36819197 |
acgatatcatcccattagattttgtttgagaattgagttttggaggtaag |
36819148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 723 - 765
Target Start/End: Complemental strand, 36817974 - 36817932
Alignment:
| Q |
723 |
ctcaaaataacattgacggatcaaccctatgggtgtaagagcc |
765 |
Q |
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| T |
36817974 |
ctcaaaataacattgacggatcaaccctatgggtgtaagagcc |
36817932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 461 - 518
Target Start/End: Original strand, 45226242 - 45226299
Alignment:
| Q |
461 |
aatttaatcattttggtttcacaattttagtcttaagtttctaatagtttgtcaattg |
518 |
Q |
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||||||||||||||| |||| |||||||| | || |||||||||| ||||||||||| |
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| T |
45226242 |
aatttaatcattttgatttcttaattttagccatatgtttctaataatttgtcaattg |
45226299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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