View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2218-Insertion-3 (Length: 733)

Name: NF2218-Insertion-3
Description: NF2218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2218-Insertion-3
NF2218-Insertion-3
[»] chr2 (2 HSPs)
chr2 (7-680)||(5272959-5273624)
chr2 (187-288)||(5268732-5268833)


Alignment Details
Target: chr2 (Bit Score: 547; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 547; E-Value: 0
Query Start/End: Original strand, 7 - 680
Target Start/End: Original strand, 5272959 - 5273624
Alignment:
Q  7 aataataatattattgtcagtgtcaaatcttctgtctcacaactaattaatcaaatttttcctnnnnnnnnn-ctaattaatcagaattatcatataatg 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||    
T  5272959 aataataatattattgtcagtgtcaaatcttctgtctcacaactaattaatcaaatttttcctaaaagaaaaactaattaatcagaattatcatataatg 5273058  T
Q  106 cactagcctagtttacctttctatgtccctgacaggtagtgtttgctacctatttgatatgaaaaatgttgtaacatcacattttctttccaactaaacg 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5273059 cactagcctagtttacctttctatgtccctgacaggtagtgtttgctacctatttgatatgaaaaatgttgtaacatcacattttctttccaactaaacg 5273158  T
Q  206 aaacctttcaccaatgagcatcctcaataaaagccaatcccttctccctcattcctcacataaggacacaaataaagtactatcaaatatcaatcaagta 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||    
T  5273159 aaacctttcaccaatgagcatcctcaataaaagccaatcccttctccctcattcctcacataaggacacaaataaagtactatcaa-------tcaagta 5273251  T
Q  306 gtaatctcaagtgtcctaaacactaatcaacattcaaaactctttaaaacaattacttactacaatgatgaaactacgatctcttttctttgcctcaatt 405  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5273252 gtaatctcaagtgtcctaaacactaatcaacattcaaaactctttaaa-caattacttactacaatgatgaaactacgatctcttttctttgcctcaatt 5273350  T
Q  406 ctacagctactaattctcaccctctactattccactaccacctcagcacaaatctcaccagttcaatctccacaagcctctacaccagcaccaggtttca 505  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5273351 ctacagctactaattctcaccctctactattccactaccacctcagcacaaatctcaccagttcaatctccacaagcctctacaccagcaccaggtttca 5273450  T
Q  506 acacagtcccccttgtaccagtaaccccgagtggggcccccaccccaaatattctcccaaaatcaccatccatagacattatccaaatcctcnnnnnnnn 605  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||            
T  5273451 acacagtcccccttgtaccagtaaccccgagtggggcccccacccctaatattctcccaaaatcaccatccatagacattatccaaatcctcaaaaaagc 5273550  T
Q  606 nnnnngattctcagttctcattcgtcttctccaaacaactcagttaataaaaccaactcagctcacaactagtta 680  Q
         |||||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||    
T  5273551 aaaaagattctcagttctcattcgtcttctcaaaacaactcagttaat-aaaccaactcaactcacaactagtta 5273624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 187 - 288
Target Start/End: Original strand, 5268732 - 5268833
Alignment:
Q  187 ttttctttccaactaaacgaaacctttcaccaatgagcatcctcaataaaagccaatcccttctccctcattcctcacataaggacacaaataaagtact 286  Q
    ||||||||| | |||||| ||||||| || |||| ||||||||||||||||| |||||| ||||||||||||||||||| |||||||| | | |||||||    
T  5268732 ttttctttctacctaaactaaaccttgcatcaattagcatcctcaataaaaggcaatccattctccctcattcctcacaaaaggacaccagttaagtact 5268831  T
Q  287 at 288  Q
    ||    
T  5268832 at 5268833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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