View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2218-Insertion-4 (Length: 652)

Name: NF2218-Insertion-4
Description: NF2218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2218-Insertion-4
NF2218-Insertion-4
[»] chr7 (12 HSPs)
chr7 (8-647)||(7631134-7631773)
chr7 (248-385)||(7638024-7638158)
chr7 (173-248)||(23578097-23578172)
chr7 (135-247)||(11776403-11776514)
chr7 (141-238)||(2463445-2463541)
chr7 (167-220)||(36675211-36675264)
chr7 (547-647)||(7638368-7638468)
chr7 (140-236)||(27938762-27938857)
chr7 (135-239)||(33730108-33730211)
chr7 (143-200)||(7631020-7631076)
chr7 (175-216)||(8547326-8547367)
chr7 (138-238)||(21416200-21416299)
[»] chr2 (9 HSPs)
chr2 (135-248)||(19548134-19548246)
chr2 (160-248)||(40053444-40053531)
chr2 (167-252)||(28226323-28226408)
chr2 (135-251)||(19547856-19547972)
chr2 (135-195)||(10066574-10066633)
chr2 (170-238)||(39334462-39334530)
chr2 (167-238)||(13792581-13792652)
chr2 (21-135)||(40053297-40053408)
chr2 (135-205)||(40053195-40053264)
[»] chr8 (8 HSPs)
chr8 (135-249)||(2954564-2954677)
chr8 (135-238)||(5981498-5981600)
chr8 (167-248)||(2954312-2954393)
chr8 (188-247)||(23125199-23125258)
chr8 (135-244)||(5072975-5073084)
chr8 (21-125)||(5981645-5981747)
chr8 (135-203)||(5981790-5981856)
chr8 (61-125)||(22898166-22898229)
[»] chr6 (5 HSPs)
chr6 (142-238)||(7301647-7301742)
chr6 (142-240)||(15092057-15092154)
chr6 (21-100)||(7301502-7301580)
chr6 (174-220)||(11638107-11638153)
chr6 (140-232)||(28940818-28940911)
[»] chr5 (6 HSPs)
chr5 (181-249)||(26420849-26420917)
chr5 (135-196)||(27856171-27856231)
chr5 (179-236)||(21633404-21633461)
chr5 (179-236)||(21641651-21641708)
chr5 (135-196)||(28296083-28296143)
chr5 (21-84)||(41341350-41341411)
[»] chr3 (9 HSPs)
chr3 (135-238)||(43978631-43978733)
chr3 (135-249)||(43481578-43481690)
chr3 (167-252)||(53595946-53596031)
chr3 (167-252)||(53596261-53596346)
chr3 (138-238)||(43978928-43979027)
chr3 (135-203)||(40195876-40195943)
chr3 (167-238)||(16143438-16143509)
chr3 (135-248)||(32201029-32201141)
chr3 (213-249)||(28978989-28979025)
[»] chr1 (11 HSPs)
chr1 (142-248)||(43834485-43834590)
chr1 (135-248)||(11199913-11200025)
chr1 (169-247)||(8179758-8179836)
chr1 (135-244)||(38637504-38637612)
chr1 (135-203)||(6182407-6182474)
chr1 (135-238)||(4392248-4392350)
chr1 (135-238)||(15327856-15327958)
chr1 (169-247)||(5821717-5821795)
chr1 (135-252)||(26231711-26231825)
chr1 (135-196)||(50391947-50392007)
chr1 (174-238)||(12466283-12466347)
[»] chr4 (8 HSPs)
chr4 (135-236)||(47680623-47680723)
chr4 (22-138)||(26473513-26473628)
chr4 (167-204)||(10396450-10396487)
chr4 (135-204)||(11307635-11307703)
chr4 (138-237)||(11197227-11197325)
chr4 (135-248)||(8445845-8445957)
chr4 (21-138)||(47680753-47680868)
chr4 (135-203)||(51681284-51681352)
[»] scaffold0256 (1 HSPs)
scaffold0256 (143-238)||(13369-13463)
[»] scaffold0548 (1 HSPs)
scaffold0548 (135-197)||(4124-4185)


Alignment Details
Target: chr7 (Bit Score: 604; Significance: 0; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 604; E-Value: 0
Query Start/End: Original strand, 8 - 647
Target Start/End: Original strand, 7631134 - 7631773
Alignment:
Q  8 tagacaccacagcagcctgatccaggctaggatcccactctcgctccccctaccgagcttaaccagggctctaatactagtttgttggggagtccagaga 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  7631134 tagacaccacagcagcctgatccaggctaggatcccactctcgctccccctaccgagcttaaccagggctctaataccagtttgttggggagtccagaga 7631233  T
Q  108 gcgtcgggagcggcaatgtgccaaacgtccacccaaaaccttaagccattaggtatatggggtctcctctcttatatatccaacattttctccattttca 207  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7631234 gcgtcgggagcggcaatgtgccaaacgtccacccaaaagcttaagccattaggtatatggggtctcctctcttatatatccaacattttctccattttca 7631333  T
Q  208 gtagatgtgggacttaactactcacacttgaaacccaacaaatattccaattttacggaccaaatcaagtatttacgaaaatttcctctttttctcggca 307  Q
    || |||||||||||||||||||||||||||||||||||||||  || ||||||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  7631334 gtcgatgtgggacttaactactcacacttgaaacccaacaaaagttacaattttccggaccaaatcaagtatttatgaaaatttcctctttttctcggca 7631433  T
Q  308 cgttggtgtatgatgaaagtgagaattaaattttttaaaataatttgtcaccggcctgtttgtgttgttgatttcaccaatttcaccattttgatattta 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  7631434 cgttggtgtatgatgaaagtgagaattaaattttttaaaataatttgtcaccggtctgtttgtgttgttgatttcaccaatttcaccattttgatattta 7631533  T
Q  408 ctatgtcggtcagtgtatcatcgcatgttttatgtatcatttgtagccatactttttctgtatagatcatgggaggcatattgtcatctccagcaggctt 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7631534 ctatgtcggtcagtgtatcatcgcatgttttatgtatcatttgtagccatactttttctgtatagatcatgggaggcatattgtcatctccagcaggctt 7631633  T
Q  508 acataagctccaaatccaaaaacataacgcgggcgatgagaaagatatgatcagcaatttacctgatgatattctgcattatattctttgttttctccct 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7631634 acataagctccaaatccaaaaacataacgcgggcgatgagaaagatatgatcagcaatttacctgatgatattctgcattatattctttgttttctccct 7631733  T
Q  608 atccaagacgttgtccgaacttccatattagcaacaaagt 647  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  7631734 atccaagacgttgtccgaacttccatattagcaacaaagt 7631773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 248 - 385
Target Start/End: Original strand, 7638024 - 7638158
Alignment:
Q  248 aatattccaattttacggaccaaatcaagtatttacgaaaatttcctctttttctcggcacgttggtgtatgatgaaagtgagaattaaattttttaaaa 347  Q
    |||||| ||||||||| ||||||||||||||||||| ||||||  |||||||||||||||| ||||| | ||||   ||||| ||||||||||||  |||    
T  7638024 aatattacaattttactgaccaaatcaagtatttactaaaattatctctttttctcggcacattggtctgtgat-tgagtgaaaattaaattttt--aaa 7638120  T
Q  348 taatttgtcaccggcctgtttgtgttgttgatttcacc 385  Q
    |||||||||||| ||| |||||||| ||  ||||||||    
T  7638121 taatttgtcaccagccagtttgtgtcgtcaatttcacc 7638158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 173 - 248
Target Start/End: Original strand, 23578097 - 23578172
Alignment:
Q  173 cctctcttatatatccaacattttctccattttcagtagatgtgggacttaactactcacacttgaaacccaacaa 248  Q
    ||||||||||||||||||| ||||||||||||  | | ||||||||||||||  |||||||| |||||||||||||    
T  23578097 cctctcttatatatccaacgttttctccatttctactcgatgtgggacttaatcactcacacatgaaacccaacaa 23578172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 135 - 247
Target Start/End: Original strand, 11776403 - 11776514
Alignment:
Q  135 tccacccaaaaccttaagccattaggtatatggggtctcctctcttatatatccaacattttctccattttcagtagatgtgggacttaactactcacac 234  Q
    ||||||||||||||||||  |||| ||||||||| || |||||||||||||| |||  ||| |||||||   ||| |||||||||| |||  ||||||||    
T  11776403 tccacccaaaaccttaaggtattatgtatatggg-tcccctctcttatatattcaatgtttcctccattcctagttgatgtgggacataatcactcacac 11776501  T
Q  235 ttgaaacccaaca 247  Q
    ||||| |||||||    
T  11776502 ttgaatcccaaca 11776514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 238
Target Start/End: Complemental strand, 2463541 - 2463445
Alignment:
Q  141 caaaaccttaagccattaggtatatggggtctcctctcttatatatccaacattttctccattttcagtagatgtgggacttaactactcacacttga 238  Q
    |||||||||||| ||| ||||||||| | || |||||||||||||||||| |||| ||||||||  |    ||||||||| ||| |||||||||||||    
T  2463541 caaaaccttaaggcatcaggtatatgtg-tcccctctcttatatatccaatatttcctccatttctaaccaatgtgggacataattactcacacttga 2463445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 220
Target Start/End: Complemental strand, 36675264 - 36675211
Alignment:
Q  167 gggtctcctctcttatatatccaacattttctccattttcagtagatgtgggac 220  Q
    ||||||| ||||||||||||||||| ||||||||||||  ||| ||||||||||    
T  36675264 gggtctcatctcttatatatccaacgttttctccatttatagtcgatgtgggac 36675211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 547 - 647
Target Start/End: Original strand, 7638368 - 7638468
Alignment:
Q  547 gaaagatatgatcagcaatttacctgatgatattctgcattatattctttgttttctccctatccaagacgttgtccgaacttccatattagcaacaaag 646  Q
    |||||||||||| ||| | |||| ||  ||||||||||| |||||||| | ||| ||||||| | |||| ||| |  |||||||| ||||||||||||||    
T  7638368 gaaagatatgattagcgacttacatggcgatattctgcactatattctatctttgctccctaccaaagatgttataagaacttccgtattagcaacaaag 7638467  T
Q  647 t 647  Q
    |    
T  7638468 t 7638468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 140 - 236
Target Start/End: Complemental strand, 27938857 - 27938762
Alignment:
Q  140 ccaaaaccttaagccattaggtatatggggtctcctctcttatatatccaacattttctccattttcagtagatgtgggacttaactactcacactt 236  Q
    ||||||||||||| | ||||||||||| | |||||| |||||||||||||||  || ||| ||||||||  ||||| |||| |||  ||||||||||    
T  27938857 ccaaaaccttaaggctttaggtatatgag-tctcctttcttatatatccaacgattcctcaattttcagccgatgtcggacataatcactcacactt 27938762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 135 - 239
Target Start/End: Original strand, 33730108 - 33730211
Alignment:
Q  135 tccacccaaaaccttaagccattaggtatatggggtctcctctcttatatatccaacattttctccattttcagtagatgtgggacttaactactcacac 234  Q
    |||| ||||||||||||  |||||| | |||||| || |||||||| ||||||||||||||   |||||   ||| ||||||||||||||| |||| |||    
T  33730108 tccatccaaaaccttaatgcattagctctatggg-tcacctctcttttatatccaacatttaacccattcatagtcgatgtgggacttaaccactcgcac 33730206  T
Q  235 ttgaa 239  Q
    |||||    
T  33730207 ttgaa 33730211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 200
Target Start/End: Complemental strand, 7631076 - 7631020
Alignment:
Q  143 aaaccttaagccattaggtatatggggtctcctctcttatatatccaacattttctcc 200  Q
    |||||||||| ||| ||||| ||||| |||| |||||||||||||| |||||||||||    
T  7631076 aaaccttaaggcatcaggtacatggg-tctcatctcttatatatccgacattttctcc 7631020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 175 - 216
Target Start/End: Original strand, 8547326 - 8547367
Alignment:
Q  175 tctcttatatatccaacattttctccattttcagtagatgtg 216  Q
    ||||| ||||||||||||||||||||||||| ||| ||||||    
T  8547326 tctctgatatatccaacattttctccatttttagttgatgtg 8547367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 138 - 238
Target Start/End: Original strand, 21416200 - 21416299
Alignment:
Q  138 acccaaaaccttaagccattaggtatatggggtctcctctcttatatatccaacattttctccattttcagtagatgtgggacttaactactcacacttg 237  Q
    |||||||||| |||| || | ||| |||||| |||||||||||||||||||||  |||  ||||| |  ||| |||||||||| |||  |||||||||||    
T  21416200 acccaaaaccctaaggcaatgggtttatggg-tctcctctcttatatatccaatttttgttccatgtctagttgatgtgggacataatcactcacacttg 21416298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 8e-29; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 135 - 248
Target Start/End: Complemental strand, 19548246 - 19548134
Alignment:
Q  135 tccacccaaaaccttaagccattaggtatatggggtctcctctcttatatatccaacattttctccattttcagtagatgtgggacttaactactcacac 234  Q
    |||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||| ||| ||||  ||| |||||||||| |||| |||||| |    
T  19548246 tccacccaaaaccttaagacattagatatatggg-tctcctctcttatatatccaacatttcctctatttctagtcgatgtgggacataaccactcacgc 19548148  T
Q  235 ttgaaacccaacaa 248  Q
    ||||||||||||||    
T  19548147 ttgaaacccaacaa 19548134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 160 - 248
Target Start/End: Complemental strand, 40053531 - 40053444
Alignment:
Q  160 gtatatggggtctcctctcttatatatccaacattttctccattttcagtagatgtgggacttaactactcacacttgaaacccaacaa 248  Q
    ||||||||| || ||||||||||||||||||||||| ||||||||| ||  |||||||||| ||| || ||||||||||  ||||||||    
T  40053531 gtatatgggttc-cctctcttatatatccaacatttcctccatttttagccgatgtgggacataattattcacacttgattcccaacaa 40053444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 167 - 252
Target Start/End: Complemental strand, 28226408 - 28226323
Alignment:
Q  167 gggtctcctctcttatatatccaacattttctccattttcagtagatgtgggac-ttaactactcacacttgaaacccaacaaatat 252  Q
    ||||||||||||||||||||||||| ||| ||||||||  ||| |||||||||| ||||| ||||||||||||   |||||||||||    
T  28226408 gggtctcctctcttatatatccaacgtttcctccatttctagtcgatgtgggacattaac-actcacacttgatttccaacaaatat 28226323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 135 - 251
Target Start/End: Complemental strand, 19547972 - 19547856
Alignment:
Q  135 tccacccaaaaccttaagccattaggtatatggggtctcc-tctcttatatatccaacattttctccattttcagtagatgtgggacttaactactcaca 233  Q
    ||||| |||||||||||  ||||| |||||| || ||||| |||||||||||||||||||||  |||||||  ||| ||| |  ||| ||| ||||||||    
T  19547972 tccacacaaaaccttaaagcattatgtatatagg-tctccctctcttatatatccaacatttcttccatttctagtcgatataagacataattactcaca 19547874  T
Q  234 cttgaaacccaacaaata 251  Q
    ||||||||| ||||||||    
T  19547873 cttgaaacctaacaaata 19547856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 195
Target Start/End: Complemental strand, 10066633 - 10066574
Alignment:
Q  135 tccacccaaaaccttaagccattaggtatatggggtctcctctcttatatatccaacattt 195  Q
    ||||||||||| |||||| |||||||||||| || |||||| |||||||||||||||||||    
T  10066633 tccacccaaaatcttaaggcattaggtatat-ggatctcctatcttatatatccaacattt 10066574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 170 - 238
Target Start/End: Original strand, 39334462 - 39334530
Alignment:
Q  170 tctcctctcttatatatccaacattttctccattttcagtagatgtgggacttaactactcacacttga 238  Q
    |||||||| || |||||||||||||| ||| ||||| ||||||||| ||||||||  ||||||||||||    
T  39334462 tctcctcttttttatatccaacatttcctcgatttttagtagatgtaggacttaatcactcacacttga 39334530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 167 - 238
Target Start/End: Original strand, 13792581 - 13792652
Alignment:
Q  167 gggtctcctctcttatatatccaacattttctccattttcagtagatgtgggacttaactactcacacttga 238  Q
    ||||||||||||||||||||| || |||| ||||||||  ||| |||||||||| |||  ||||||||||||    
T  13792581 gggtctcctctcttatatatcaaatatttcctccatttctagttgatgtgggacataatcactcacacttga 13792652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 21 - 135
Target Start/End: Complemental strand, 40053408 - 40053297
Alignment:
Q  21 agcctgatccaggctaggatcccactctcgctccccctaccgagcttaaccagggctctaatactagtttgttggggagtccagagagcgtcgggagcgg 120  Q
    ||||||||||||||||||||||||||  ||||||||  | ||||| |||  |||||||| |||| |  |||| ||||||||| | ||||| |||||||||    
T  40053408 agcctgatccaggctaggatcccacttccgctcccc--atcgagcctaatgagggctctgatacca-attgtaggggagtcctgggagcgacgggagcgg 40053312  T
Q  121 caatgtgccaaacgt 135  Q
    ||||| || ||||||    
T  40053311 caatgagctaaacgt 40053297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 135 - 205
Target Start/End: Complemental strand, 40053264 - 40053195
Alignment:
Q  135 tccacccaaaaccttaagccattaggtatatggggtctcctctcttatatatccaacattttctccatttt 205  Q
    |||||| ||||||||||| ||| | ||||||||| || ||||||||||| ||| |||||||||||||||||    
T  40053264 tccacctaaaaccttaagacatcatgtatatggg-tcccctctcttataaatctaacattttctccatttt 40053195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 3e-22; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 135 - 249
Target Start/End: Original strand, 2954564 - 2954677
Alignment:
Q  135 tccacccaaaaccttaagccattaggtatatggggtctcctctcttatatatccaacattttctccattttcagtagatgtgggacttaactactcacac 234  Q
    |||||| ||||||||||| ||| ||| ||||||| ||| ||||||||||||||||||||||||||||||   |||  ||||||||| |||  ||||||||    
T  2954564 tccaccgaaaaccttaaggcatcaggcatatggg-tcttctctcttatatatccaacattttctccattcctagtctatgtgggacataatcactcacac 2954662  T
Q  235 ttgaaacccaacaaa 249  Q
    |||||||||||||||    
T  2954663 ttgaaacccaacaaa 2954677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 135 - 238
Target Start/End: Original strand, 5981498 - 5981600
Alignment:
Q  135 tccacccaaaaccttaagccattaggtatatggggtctcctctcttatatatccaacattttctccattttcagtagatgtgggacttaactactcacac 234  Q
    |||||||||||||||||| ||| ||||| ||||| || ||||||||||||||||||| |||||||||||   ||| |||||||||| |||  ||||||||    
T  5981498 tccacccaaaaccttaaggcatcaggtacatggg-tcccctctcttatatatccaacgttttctccattcctagtcgatgtgggacataatcactcacac 5981596  T
Q  235 ttga 238  Q
    ||||    
T  5981597 ttga 5981600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 167 - 248
Target Start/End: Original strand, 2954312 - 2954393
Alignment:
Q  167 gggtctcctctcttatatatccaacattttctccattttcagtagatgtgggacttaactactcacacttgaaacccaacaa 248  Q
    |||||||||||||||||||||||||||||||||||||   ||| |||||||||  |||  ||||||||||||||| ||||||    
T  2954312 gggtctcctctcttatatatccaacattttctccattcctagtcgatgtgggaaataatcactcacacttgaaactcaacaa 2954393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 188 - 247
Target Start/End: Complemental strand, 23125258 - 23125199
Alignment:
Q  188 caacattttctccattttcagtagatgtgggacttaactactcacacttgaaacccaaca 247  Q
    ||||||||| |||||||  ||| ||||| ||||||||| |||||||||||||||||||||    
T  23125258 caacattttatccatttatagttgatgtaggacttaaccactcacacttgaaacccaaca 23125199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 135 - 244
Target Start/End: Complemental strand, 5073084 - 5072975
Alignment:
Q  135 tccacccaaaaccttaagccattaggtatatggggtctcctctcttatatatccaaca-ttttctccattttcagtagatgtgggacttaactactcaca 233  Q
    |||||||||||||||||| ||||| ||||||| |  | |||||||||||||||||||| ||||  |||||   |   |||||| || |||||||||||||    
T  5073084 tccacccaaaaccttaaggcattacgtatatgaga-cgcctctcttatatatccaacatttttacccattcataaccgatgtgagatttaactactcaca 5072986  T
Q  234 cttgaaaccca 244  Q
    |||||||||||    
T  5072985 cttgaaaccca 5072975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 125
Target Start/End: Original strand, 5981645 - 5981747
Alignment:
Q  21 agcctgatccaggctaggatcccactctcgctccccctaccgagcttaaccagggctctaatactagtttgttggggagtccagagagcgtcgggagcgg 120  Q
    |||||||||||  |||||||||| ||| | ||||||  ||||||| ||||||||| ||| |||| | ||  | ||||||||| | |||||||| ||||||    
T  5981645 agcctgatccacactaggatcccgctcccactcccc--accgagcctaaccagggttctgataccatttcttgggggagtccggggagcgtcgagagcgg 5981742  T
Q  121 caatg 125  Q
    |||||    
T  5981743 caatg 5981747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 135 - 203
Target Start/End: Original strand, 5981790 - 5981856
Alignment:
Q  135 tccacccaaaaccttaagccattaggtatatggggtctcctctcttatatatccaacattttctccatt 203  Q
    |||||||||||||||||| || | ||| |||||| || ||||||||||||||||||| ||| |||||||    
T  5981790 tccacccaaaaccttaaggcaat-ggtttatggg-tcccctctcttatatatccaacgtttcctccatt 5981856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 61 - 125
Target Start/End: Complemental strand, 22898229 - 22898166
Alignment:
Q  61 cgagcttaaccagggctctaatactagtttgttggggagtccagagagcgtcgggagcggcaatg 125  Q
    |||| ||||| ||||||||||||| | | ||||||||||| ||| |||||||| |||||||||||    
T  22898229 cgagtttaacaagggctctaatacca-tatgttggggagttcagggagcgtcgagagcggcaatg 22898166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 1e-18; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 142 - 238
Target Start/End: Original strand, 7301647 - 7301742
Alignment:
Q  142 aaaaccttaagccattaggtatatggggtctcctctcttatatatccaacattttctccattttcagtagatgtgggacttaactactcacacttga 238  Q
    |||||||||||  |||||||||||| | || ||||| ||||||||| ||||||||||||||||| ||| |||||||||| ||| |||||||||||||    
T  7301647 aaaaccttaagatattaggtatatgtg-tcccctcttttatatatctaacattttctccatttttagtcgatgtgggacataattactcacacttga 7301742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 142 - 240
Target Start/End: Complemental strand, 15092154 - 15092057
Alignment:
Q  142 aaaaccttaagccattaggtatatggggtctcctctcttatatatccaacattttctccattttcagtagatgtgggacttaactactcacacttgaaa 240  Q
    ||||||||||  ||| ||||||||||  || |||||| |||||||||||||||||||| ||||  | | ||||||| | ||||| ||||||||||||||    
T  15092154 aaaaccttaaagcatcaggtatatgga-tcccctctcgtatatatccaacattttctcaatttctaatcgatgtggtatttaaccactcacacttgaaa 15092057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 100
Target Start/End: Original strand, 7301502 - 7301580
Alignment:
Q  21 agcctgatccaggctaggatcccactctcgctccccctaccgagcttaaccagggctctaatactagtttgttggggagt 100  Q
    |||||||||||   ||||||||| ||| | ||||||| | ||||| |||||| |||||| ||||||||||||||||||||    
T  7301502 agcctgatccacattaggatcccgctcccactccccc-atcgagcctaaccatggctctgatactagtttgttggggagt 7301580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 174 - 220
Target Start/End: Original strand, 11638107 - 11638153
Alignment:
Q  174 ctctcttatatatccaacattttctccattttcagtagatgtgggac 220  Q
    ||||||||||||||||| |||||||||||||  ||| ||||||||||    
T  11638107 ctctcttatatatccaatattttctccatttctagttgatgtgggac 11638153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 140 - 232
Target Start/End: Original strand, 28940818 - 28940911
Alignment:
Q  140 ccaaaaccttaagccattaggtatatggggtctcctctcttatatatccaaca-ttttctccattttc-agtagatgtgggacttaactactcac 232  Q
    |||||| |||||| ||||||||||| | | |||| |||||||||| ||||||| |||||| ||||||| ||| |||||| ||||||||| |||||    
T  28940818 ccaaaatcttaagacattaggtatacgag-tctcttctcttatatgtccaacatttttcttcattttctagtcgatgtgagacttaactgctcac 28940911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 3e-16; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 181 - 249
Target Start/End: Original strand, 26420849 - 26420917
Alignment:
Q  181 atatatccaacattttctccattttcagtagatgtgggacttaactactcacacttgaaacccaacaaa 249  Q
    ||||||||||||||| ||||||||  ||| |||||||||||||||||||||||||||||  ||||||||    
T  26420849 atatatccaacatttcctccatttctagtcgatgtgggacttaactactcacacttgaattccaacaaa 26420917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 196
Target Start/End: Complemental strand, 27856231 - 27856171
Alignment:
Q  135 tccacccaaaaccttaagccattaggtatatggggtctcctctcttatatatccaacatttt 196  Q
    |||||||||||| ||||| ||||||||||||| |  | ||||||||||||||||||||||||    
T  27856231 tccacccaaaactttaaggcattaggtatatgagc-cacctctcttatatatccaacatttt 27856171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 236
Target Start/End: Original strand, 21633404 - 21633461
Alignment:
Q  179 ttatatatccaacattttctccattttcagtagatgtgggacttaactactcacactt 236  Q
    |||||||||||| |||||||||||||| | | ||||||| ||||||  ||||||||||    
T  21633404 ttatatatccaatattttctccatttttaattgatgtggaacttaaacactcacactt 21633461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 236
Target Start/End: Original strand, 21641651 - 21641708
Alignment:
Q  179 ttatatatccaacattttctccattttcagtagatgtgggacttaactactcacactt 236  Q
    |||||||||||| |||||||||||||| | | ||||||| ||||||  ||||||||||    
T  21641651 ttatatatccaatattttctccatttttaattgatgtggaacttaaacactcacactt 21641708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 196
Target Start/End: Original strand, 28296083 - 28296143
Alignment:
Q  135 tccacccaaaaccttaagccattaggtatatggggtctcctctcttatatatccaacatttt 196  Q
    ||||||||||||||||||  ||||||||||| ||||| ||||||||||| || ||| |||||    
T  28296083 tccacccaaaaccttaagagattaggtatat-gggtcacctctcttatacattcaatatttt 28296143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 21 - 84
Target Start/End: Complemental strand, 41341411 - 41341350
Alignment:
Q  21 agcctgatccaggctaggatcccactctcgctccccctaccgagcttaaccagggctctaatac 84  Q
    |||||||||||  |||||||||| ||||||||||||  || |||| |||||| |||||||||||    
T  41341411 agcctgatccacactaggatcccgctctcgctcccc--actgagcctaaccacggctctaatac 41341350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 135 - 238
Target Start/End: Original strand, 43978631 - 43978733
Alignment:
Q  135 tccacccaaaaccttaagccattaggtatatggggtctcctctcttatatatccaacattttctccattttcagtagatgtgggacttaactactcacac 234  Q
    |||||||||||||||||| || |||||||||| | |||||||||||||||||||||  ||| |||||||   ||| |||||||||| |||  ||||||||    
T  43978631 tccacccaaaaccttaaggcaataggtatatgag-tctcctctcttatatatccaatgtttcctccattcctagtcgatgtgggacataatcactcacac 43978729  T
Q  235 ttga 238  Q
    ||||    
T  43978730 ttga 43978733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 135 - 249
Target Start/End: Complemental strand, 43481690 - 43481578
Alignment:
Q  135 tccacccaaaaccttaagccattaggtatatggggtctcctctcttatatatccaacattttctccattttcagtagatgtgggacttaactactcacac 234  Q
    |||||| |||| |||||  ||| ||||||||||| || ||||||||||||||||||||||| |||||||   ||| |||||| ||| |||  ||||||||    
T  43481690 tccacctaaaatcttaatgcatcaggtatatggg-tcccctctcttatatatccaacatttcctccattcctagtcgatgtgagacataatcactcacac 43481592  T
Q  235 ttgaaacccaacaaa 249  Q
    ||| |||||||||||    
T  43481591 ttg-aacccaacaaa 43481578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 167 - 252
Target Start/End: Complemental strand, 53596031 - 53595946
Alignment:
Q  167 gggtctcctctcttatatatccaacattttctccattttcagtagatgtgggacttaactactcacacttgaaacccaacaaatat 252  Q
    ||||||||||||||||||||||||||||||||| ||||  |||  ||||||||| |||  |||| |||||||   |||||||||||    
T  53596031 gggtctcctctcttatatatccaacattttctctatttctagtcaatgtgggacataatcactcgcacttgatttccaacaaatat 53595946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 167 - 252
Target Start/End: Complemental strand, 53596346 - 53596261
Alignment:
Q  167 gggtctcctctcttatatatccaacattttctccattttcagtagatgtgggacttaactactcacacttgaaacccaacaaatat 252  Q
    ||||||||||||||||||||||||||||||||| ||||  |||  ||||||||| |||  |||| |||||||   |||||||||||    
T  53596346 gggtctcctctcttatatatccaacattttctctatttctagtcaatgtgggacataatcactcgcacttgatttccaacaaatat 53596261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 238
Target Start/End: Original strand, 43978928 - 43979027
Alignment:
Q  138 acccaaaaccttaagccattaggtatatggggtctcctctcttatatatccaacattttctccattttcagtagatgtgggacttaactactcacacttg 237  Q
    ||||||||||||||| || |||||||| |||| ||||||||||||| | ||||| ||| ||||||| | ||| |||||||||| |||  ||||||| |||    
T  43978928 acccaaaaccttaaggcaataggtatacgggg-ctcctctcttatacacccaacgtttcctccattcttagtcgatgtgggacataatcactcacatttg 43979026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 135 - 203
Target Start/End: Original strand, 40195876 - 40195943
Alignment:
Q  135 tccacccaaaaccttaagccattaggtatatggggtctcctctcttatatatccaacattttctccatt 203  Q
    ||||||||||||||  || ||| | ||||||||| |||||||||||||||||||||| ||| |||||||    
T  40195876 tccacccaaaacctctaggcatcatgtatatggg-tctcctctcttatatatccaacgtttcctccatt 40195943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 167 - 238
Target Start/End: Complemental strand, 16143509 - 16143438
Alignment:
Q  167 gggtctcctctcttatatatccaacattttctccattttcagtagatgtgggacttaactactcacacttga 238  Q
    ||||||| ||||||||||||||||||||| ||||||||  || |||||||| || | |  ||||||||||||    
T  16143509 gggtctcgtctcttatatatccaacatttgctccatttctagcagatgtggaacattatcactcacacttga 16143438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 248
Target Start/End: Complemental strand, 32201141 - 32201029
Alignment:
Q  135 tccacccaaaaccttaagccattaggtatatggggtctcctctcttatatatccaacattttctccattttcagtagatgtgggacttaactactcacac 234  Q
    ||||||||||| |||||| ||| | ||||||  | ||||||||||| |||||| ||||||| || |||||| ||| |||||| ||| |||  |||||||     
T  32201141 tccacccaaaatcttaaggcatcaagtatatatg-tctcctctcttgtatatcaaacatttccttcatttttagtcgatgtgagacataatcactcacat 32201043  T
Q  235 ttgaaacccaacaa 248  Q
    ||||  ||||||||    
T  32201042 ttgattcccaacaa 32201029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 213 - 249
Target Start/End: Complemental strand, 28979025 - 28978989
Alignment:
Q  213 tgtgggacttaactactcacacttgaaacccaacaaa 249  Q
    |||| |||||||| |||||||||||||||||||||||    
T  28979025 tgtgagacttaaccactcacacttgaaacccaacaaa 28978989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 142 - 248
Target Start/End: Complemental strand, 43834590 - 43834485
Alignment:
Q  142 aaaaccttaagccattaggtatatggggtctcctctcttatatatccaacattttctccattttcagtagatgtgggacttaactactcacacttgaaac 241  Q
    ||||||||||| |||||||||||| ||||| |||||||||||||| ||||||||  |||||| | ||  |||||| ||  |||  |||||||||||||||    
T  43834590 aaaaccttaagacattaggtatat-gggtcccctctcttatatattcaacatttcatccattcttagccgatgtgagatataatcactcacacttgaaac 43834492  T
Q  242 ccaacaa 248  Q
    |||||||    
T  43834491 ccaacaa 43834485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 135 - 248
Target Start/End: Complemental strand, 11200025 - 11199913
Alignment:
Q  135 tccacccaaaaccttaagccattaggtatatggggtctcctctcttatatatccaacattttctccattttcagtagatgtgggacttaactactcacac 234  Q
    |||||||||||||||||| ||||||| ||||| | || ||||||||||||||||||||||||  | |||   ||   ||||| |||||||| ||||||||    
T  11200025 tccacccaaaaccttaaggcattaggcatatgag-tcacctctcttatatatccaacattttacctattcataggcaatgtgagacttaaccactcacac 11199927  T
Q  235 ttgaaacccaacaa 248  Q
    || |||||||||||    
T  11199926 ttaaaacccaacaa 11199913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 169 - 247
Target Start/End: Original strand, 8179758 - 8179836
Alignment:
Q  169 gtctcctctcttatatatccaacattttctccattttcagtagatgtgggacttaactactcacacttgaaacccaaca 247  Q
    ||||||| ||||||||||| ||||||||||||||||| | | |||||| |||||||  ||| |||||  ||||||||||    
T  8179758 gtctcctatcttatatatcaaacattttctccattttaaatcgatgtgtgacttaatcactaacactcaaaacccaaca 8179836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 244
Target Start/End: Complemental strand, 38637612 - 38637504
Alignment:
Q  135 tccacccaaaaccttaagccattaggtatatggggtctcctctcttatatatccaacattttctccattttcagtagatgtgggacttaactactcacac 234  Q
    ||||||||| |||||||| ||||||||||||  |||| |||| |||||||  |||||||||| |||||||  ||   || ||||||||||| || |||||    
T  38637612 tccacccaataccttaaggcattaggtatat-aggtcacctcacttatatggccaacattttatccatttataggcaatttgggacttaaccacccacac 38637514  T
Q  235 ttgaaaccca 244  Q
    || |||||||    
T  38637513 ttaaaaccca 38637504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 135 - 203
Target Start/End: Complemental strand, 6182474 - 6182407
Alignment:
Q  135 tccacccaaaaccttaagccattaggtatatggggtctcctctcttatatatccaacattttctccatt 203  Q
    ||||||||||| |||||| ||| |||||||| |  ||| ||||| ||||||||||||||||||||||||    
T  6182474 tccacccaaaatcttaaggcatcaggtatataga-tcttctctcatatatatccaacattttctccatt 6182407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 135 - 238
Target Start/End: Original strand, 4392248 - 4392350
Alignment:
Q  135 tccacccaaaaccttaagccattaggtatatggggtctcctctcttatatatccaacattttctccattttcagtagatgtgggacttaactactcacac 234  Q
    |||| |||||| |||||| ||| ||||||||||| |||||||| ||||||||||||  ||| |||||||   ||| |||||| ||| |||  ||||||||    
T  4392248 tccatccaaaatcttaaggcatcaggtatatggg-tctcctctgttatatatccaatgtttcctccattcatagtcgatgtgagacataatcactcacac 4392346  T
Q  235 ttga 238  Q
    ||||    
T  4392347 ttga 4392350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 135 - 238
Target Start/End: Complemental strand, 15327958 - 15327856
Alignment:
Q  135 tccacccaaaaccttaagccattaggtatatggggtctcctctcttatatatccaacattttctccattttcagtagatgtgggacttaactactcacac 234  Q
    |||||||||||||| ||| ||  ||||||||||| || ||||||||||||||| ||| ||| |||||||   ||| |||||| ||| |||  ||||||||    
T  15327958 tccacccaaaacctcaagacaacaggtatatggg-tcccctctcttatatatctaacgtttcctccattcctagtcgatgtgagacataatcactcacac 15327860  T
Q  235 ttga 238  Q
    ||||    
T  15327859 ttga 15327856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 169 - 247
Target Start/End: Complemental strand, 5821795 - 5821717
Alignment:
Q  169 gtctcctctcttatatatccaacattttctccattttcagtagatgtgggacttaactactcacacttgaaacccaaca 247  Q
    |||| |||||||||||||||||  ||| ||||||| ||  | |||||| ||| |||  |||||||||||||||||||||    
T  5821795 gtcttctctcttatatatccaatgtttcctccattctcgatcgatgtgagacataatcactcacacttgaaacccaaca 5821717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 135 - 252
Target Start/End: Original strand, 26231711 - 26231825
Alignment:
Q  135 tccacccaaaaccttaagccattaggtatatggggtctcctctcttatatatccaacattttctccattttcagtagatgtgggacttaactactcacac 234  Q
    ||||||||||||||||||  | | ||||||| ||||| ||||||||||||||  ||||||| ||| |||   | | |||||||||| ||| |||| ||||    
T  26231711 tccacccaaaaccttaaggtaattggtatat-gggtcccctctcttatatat--aacatttcctcaattcctaatcgatgtgggacataattacttacac 26231807  T
Q  235 ttgaaacccaacaaatat 252  Q
    || |||||||||| ||||    
T  26231808 ttaaaacccaacatatat 26231825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 196
Target Start/End: Original strand, 50391947 - 50392007
Alignment:
Q  135 tccacccaaaaccttaagccattaggtatatggggtctcctctcttatatatccaacatttt 196  Q
    |||| ||||||||||||| |||||||||||| | ||| | | ||||||||||||||||||||    
T  50391947 tccatccaaaaccttaagacattaggtatat-gagtcacatatcttatatatccaacatttt 50392007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 174 - 238
Target Start/End: Complemental strand, 12466347 - 12466283
Alignment:
Q  174 ctctcttatatatccaacattttctccattttcagtagatgtgggacttaactactcacacttga 238  Q
    ||||| |||||||||||| ||||||||||||  ||| |||||||||| |||  ||| ||||||||    
T  12466347 ctctcgtatatatccaacgttttctccatttctagttgatgtgggacataatcacttacacttga 12466283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 135 - 236
Target Start/End: Complemental strand, 47680723 - 47680623
Alignment:
Q  135 tccacccaaaaccttaagccattaggtatatggggtctcctctcttatatatccaacattttctccattttcagtagatgtgggacttaactactcacac 234  Q
    |||||||||||||||||| ||| |||||||| |||||||||||| ||||||| |||  ||| ||||||||  | | |||||||||| |||  ||||||||    
T  47680723 tccacccaaaaccttaaggcatcaggtatat-gggtctcctctcatatatattcaatgtttcctccatttataatcgatgtgggacataatcactcacac 47680625  T
Q  235 tt 236  Q
    ||    
T  47680624 tt 47680623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 138
Target Start/End: Original strand, 26473513 - 26473628
Alignment:
Q  22 gcctgatccaggctaggatcccactctcgctccccctaccgagcttaaccagggctctaatactagtttgttggggagtccagagagcgtcgggagcggc 121  Q
    ||||||||||| | |||||||| ||| ||||||||| |||||||||||||| |||||| |||| |  ||| |||||||| | | ||||| |||||| | |    
T  26473513 gcctgatccagacaaggatcccgctcccgctccccccaccgagcttaaccaaggctctgatacca-attgctggggagttcggggagcgccgggagtgcc 26473611  T
Q  122 aatgtgccaaacgtcca 138  Q
    |||| || |||||||||    
T  26473612 aatgggctaaacgtcca 26473628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 204
Target Start/End: Complemental strand, 10396487 - 10396450
Alignment:
Q  167 gggtctcctctcttatatatccaacattttctccattt 204  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  10396487 gggtctcctctcttatatatccaacatttcctccattt 10396450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 204
Target Start/End: Original strand, 11307635 - 11307703
Alignment:
Q  135 tccacccaaaaccttaagccattaggtatatggggtctcctctcttatatatccaacattttctccattt 204  Q
    |||||||||||| ||||| ||| ||||||||| | || ||||||| ||||||||||||||| ||||||||    
T  11307635 tccacccaaaacattaagacatgaggtatatgtg-tcccctctctcatatatccaacatttcctccattt 11307703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 138 - 237
Target Start/End: Complemental strand, 11197325 - 11197227
Alignment:
Q  138 acccaaaaccttaagccattaggtatatggggtctcctctcttatatatccaacattttctccattttcagtagatgtgggacttaactactcacacttg 237  Q
    |||||||||| |||| || | ||| |||||| |||||||||||||||||||||| ||| ||||||||  ||| |||||| | | |||  |||||||||||    
T  11197325 acccaaaaccctaaggcaatgggtttatggg-tctcctctcttatatatccaacgtttcctccatttctagtcgatgtgaggcataatcactcacacttg 11197227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 248
Target Start/End: Complemental strand, 8445957 - 8445845
Alignment:
Q  135 tccacccaaaaccttaagccattaggtatatggggtctcctctcttatatatccaacattttctccattttcagtagatgtgggacttaactactcacac 234  Q
    |||||| ||||||||||| ||| | ||||||| |  ||| ||||||||||||||||||||| || |||| |  |  |||||||||| |||  ||| | ||    
T  8445957 tccacctaaaaccttaaggcatcatgtatatgtgtcctc-tctcttatatatccaacatttccttcattgtgtgccgatgtgggacataatcacttagac 8445859  T
Q  235 ttgaaacccaacaa 248  Q
    ||||||||||||||    
T  8445858 ttgaaacccaacaa 8445845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 138
Target Start/End: Complemental strand, 47680868 - 47680753
Alignment:
Q  21 agcctgatccaggctaggatcccactctcgctccccctaccgagcttaaccagggctctaatactagtttgttggggagtccagagagcgtcgggagcgg 120  Q
    ||||||||||   |||||||||||||| ||||||||| || |||| ||||||||||||| |||| || ||||||||| |||    |||| |||||||||     
T  47680868 agcctgatcctcactaggatcccactcccgctccccc-actgagcctaaccagggctctgataccag-ttgttggggtgtctgaggagcatcgggagcga 47680771  T
Q  121 caatgtgccaaacgtcca 138  Q
    ||||| |  |||||||||    
T  47680770 caatgagttaaacgtcca 47680753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 135 - 203
Target Start/End: Complemental strand, 51681352 - 51681284
Alignment:
Q  135 tccacccaaaaccttaagccattaggtatatggggtctcctctcttatatatccaacattttctccatt 203  Q
    ||||||||||||||||||  ||  ||||||||||  | ||| ||||||||||||||  |||||||||||    
T  51681352 tccacccaaaaccttaaggtatatggtatatgggtccccctttcttatatatccaatgttttctccatt 51681284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 143 - 238
Target Start/End: Complemental strand, 13463 - 13369
Alignment:
Q  143 aaaccttaagccattaggtatatggggtctcctctcttatatatccaacattttctccattttcagtagatgtgggacttaactactcacacttga 238  Q
    |||||||||  |||||||||||| ||||| |||||||| || ||| ||||||| ||||||||  ||| |||||| |||||||  | ||||||||||    
T  13463 aaaccttaaagcattaggtatat-gggtcacctctcttttaaatctaacatttcctccatttctagtcgatgtgtgacttaatcattcacacttga 13369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0548 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0548
Description:

Target: scaffold0548; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 135 - 197
Target Start/End: Original strand, 4124 - 4185
Alignment:
Q  135 tccacccaaaaccttaagccattaggtatatggggtctcctctcttatatatccaacattttc 197  Q
    |||||||||||| ||||| ||| ||||||||| | || ||||||| |||||||||||||||||    
T  4124 tccacccaaaacattaagacatgaggtatatgtg-tcccctctctcatatatccaacattttc 4185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University