View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2218-Insertion-5 (Length: 615)

Name: NF2218-Insertion-5
Description: NF2218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2218-Insertion-5
NF2218-Insertion-5
[»] chr6 (2 HSPs)
chr6 (8-615)||(1180820-1181423)
chr6 (42-245)||(1186228-1186434)
[»] chr4 (2 HSPs)
chr4 (130-223)||(10202876-10202969)
chr4 (135-296)||(49610963-49611124)
[»] chr8 (9 HSPs)
chr8 (135-367)||(5183508-5183740)
chr8 (130-463)||(5174917-5175250)
chr8 (130-303)||(5193807-5193980)
chr8 (130-301)||(6230501-6230672)
chr8 (130-301)||(5204066-5204237)
chr8 (207-305)||(1797160-1797258)
chr8 (403-466)||(5194080-5194143)
chr8 (403-466)||(6230774-6230837)
chr8 (156-372)||(5170742-5170958)
[»] chr7 (4 HSPs)
chr7 (130-236)||(8552671-8552777)
chr7 (127-236)||(5177410-5177519)
chr7 (130-236)||(8305866-8305972)
chr7 (403-466)||(5177695-5177758)


Alignment Details
Target: chr6 (Bit Score: 559; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 8 - 615
Target Start/End: Original strand, 1180820 - 1181423
Alignment:
Q  8 ttcaagtcttgagaatttttgttacaataccaagaattacggtgcaccatctaagattgattttgataggtgtagaaatttaaaagagttatactcgtgg 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  1180820 ttcaagtcttgagaatttttgttacaataccaagaattacggtgcaccatctaagattgattttgataggtgtagaaatttaaaagagttatacttgtgg 1180919  T
Q  108 tctgtggagagtacttcaacaaacaagtggtttcttgaattgtttccgaaattcccttttcttgagattttgaaattaaacaattgtaaaatgcctaaga 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  1180920 tctgtggagagtacttcaacaaacaagtggtttcttgaattgtttccgaaattcccttttcttgagagtttgaaattaaacaattgtaaaatgcctaaga 1181019  T
Q  208 agattgatatttcaagtgttcgacttaagagattggagtttatgcattcctctaacttgaaggagcttaatattgattctccaaatctaatatcatttgg 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1181020 agattgatatttcaagtgttcgacttaagagattggagtttatgcattcctctaacttgaaggagcttaatattgattctccaaatctaatatcatttgg 1181119  T
Q  308 atatagcggtttgggtgcttcagaacctaccatatcttttttgaaaaattctagtcaactggaagcctgtattcatattgcggttgaatataaggatctt 407  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  1181120 atatagcggttggggtgcttcagaacctaccatatcttttttgaaaaattctagtcaactggaagcccgtattcatattgcggttgaatataaggatctt 1181219  T
Q  408 tgcaacttgaggaaattcgtgcaaaacattaaacctaacaatgttttgccatcactatctgtagccattggggagtcatatgtggtgagtatgaattaat 507  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    |||    
T  1181220 tgcaacttgagggaattcgtgcaaaacattaaacctaacaatgttttgccatcactatctgtagccattgcggagtcatatgtggtgagtatg----aat 1181315  T
Q  508 taagtacttgattcattattggttaattcaatttgtatgtttagttattaatttttgtgtatacttgccccgtcatatatatgtaggatgcattggacct 607  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  1181316 taagtacttgattcattattggttaattcgatttgtatgtttagttattaatttttgtgtatacttgccccgtcatatatatgtaggatgcattgggcct 1181415  T
Q  608 agttgttt 615  Q
    ||||||||    
T  1181416 agttgttt 1181423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 42 - 245
Target Start/End: Original strand, 1186228 - 1186434
Alignment:
Q  42 aattacggtgcaccatctaagattgattttgataggtgtagaaatttaaaagagttatactcgtggtctgtggagagtacttca---acaaacaagtggt 138  Q
    |||||||||| ||||||||  || ||| |||||||||| |||||||| ||||||||||  | | ||||||||| ||||||||     || ||||||||||    
T  1186228 aattacggtgtaccatctattatcgatattgataggtgcagaaattttaaagagttatttttgaggtctgtggcgagtacttttttcaccaacaagtggt 1186327  T
Q  139 ttcttgaattgtttccgaaattcccttttcttgagattttgaaattaaacaattgtaaaatgcctaagaagattgatatttcaagtgttcgacttaagag 238  Q
    ||||||||||||||||||||||||| |||||||||| |||||||||| | |||||| |||| ||| ||| ||||||||||||||||||||||||||||||    
T  1186328 ttcttgaattgtttccgaaattcccctttcttgagagtttgaaattagaaaattgtgaaattcctgagaggattgatatttcaagtgttcgacttaagag 1186427  T
Q  239 attggag 245  Q
     ||||||    
T  1186428 gttggag 1186434  T

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Target: chr4 (Bit Score: 50; Significance: 3e-19; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 130 - 223
Target Start/End: Original strand, 10202876 - 10202969
Alignment:
Q  130 acaagtggtttcttgaattgtttccgaaattcccttttcttgagattttgaaattaaacaattgtaaaatgcctaagaagattgatatttcaag 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||| |  |||||   |||| | |||||| | |||||||||||||||||    
T  10202876 acaagtggtttcttgaattgtttccgaaattcccttttcttgagagttttattttaaattcttgtgacatgcctgaaaagattgatatttcaag 10202969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 135 - 296
Target Start/End: Original strand, 49610963 - 49611124
Alignment:
Q  135 tggtttcttgaattgtttccgaaattcccttttcttgagattttgaaattaaacaattgtaaaatgcctaagaagattgatatttcaagtgttcgactta 234  Q
    ||||||||||| ||||||  |||||||||||| |||||||| ||||||||   |||||| | |||| || ||| |||| ||||||||||||||| |||||    
T  49610963 tggtttcttgatttgtttttgaaattccctttccttgagatattgaaatttgccaattgcacaatgtctgagacgattaatatttcaagtgttcaactta 49611062  T
Q  235 agagattggagtttatgcattcctctaacttgaaggagcttaatattgattctccaaatcta 296  Q
    ||   ||||||||    |||| |  ||||||||||||| |||| |||||| |||||||||||    
T  49611063 aggtgttggagttatctcattgccttaacttgaaggaggttaacattgatgctccaaatcta 49611124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 1e-18; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 135 - 367
Target Start/End: Original strand, 5183508 - 5183740
Alignment:
Q  135 tggtttcttgaattgtttccgaaattcccttttcttgagattttgaaattaaacaattgtaaaatgcctaagaagattgatatttcaagtgttcgactta 234  Q
    |||||||||||| ||||| |  |||  ||||| ||||||| ||| |||||  |  ||||||||||| || ||| |||| ||||||||||||||| |||||    
T  5183508 tggtttcttgaactgttttcagaatatcctttccttgagagtttaaaattgcattattgtaaaatggctgagacgattaatatttcaagtgttcaactta 5183607  T
Q  235 agagattggagtttatgcattcctctaacttgaaggagcttaatattgattctccaaatctaatatcatttggatatagcggtttgggtgcttcagaacc 334  Q
    ||   ||| ||||     |||  ||||||||||||||| ||||||||||| ||||||||||| |||||| || |||| ||| |   | || |||||| ||    
T  5183608 aggtgttgaagttatctaattgttctaacttgaaggaggttaatattgatgctccaaatctattatcatgtgtatattgcgatggtgttgattcagagcc 5183707  T
Q  335 taccatatcttttttgaaaaattctagtcaact 367  Q
    ||  ||||||||||||| || ||||||||||||    
T  5183708 tattatatcttttttgacaagttctagtcaact 5183740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 130 - 463
Target Start/End: Original strand, 5174917 - 5175250
Alignment:
Q  130 acaagtggtttcttgaattgtttccgaaattcccttttcttgagattttgaaattaaacaattgtaaaatgcctaagaagattgatatttcaagtgttcg 229  Q
    |||| |||||||||||| ||||||| ||||| ||||| ||||||| |||||||||  ||||||| |  ||| |  |||||||| |||||||||||||||     
T  5174917 acaaatggtttcttgaactgtttcctaaatttcctttccttgagagtttgaaattggacaattgcactatgtccgagaagattaatatttcaagtgttca 5175016  T
Q  230 acttaagagattggagtttatgcattcctctaacttgaaggagcttaatattgattctccaaatctaatatcatttggatatagcggtttgggtgcttca 329  Q
    |||||||   |||||| |  |  |||  ||||||||||||||| | || |||||| | ||||||||| |||  | || |||| ||||| | |||  ||||    
T  5175017 acttaaggtgttggagctatttgattgttctaacttgaaggaggtcaacattgatgcgccaaatctattattgtgtgtatattgcggtgttggtagttca 5175116  T
Q  330 gaacctaccatatcttttttgaaaaattctagtcaactggaagcctgtattcatattgcggttgaatataaggatctttgcaacttgaggaaattcgtgc 429  Q
    || ||||  ||||| ||| | | || ||||||||||||  ||| |  |||  ||||| |  || | |||    ||||||| ||||||||| |||| ||||    
T  5175117 gagcctattatatcctttctaagaagttctagtcaactaaaagtcaatatagatattcccattcattatcgtcatctttgtaacttgagggaatttgtgc 5175216  T
Q  430 aaaacattaaacctaacaatgttttgccatcact 463  Q
    ||||||| |||||| | ||||||||| |||||||    
T  5175217 aaaacatcaaacctcaaaatgttttgacatcact 5175250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 130 - 303
Target Start/End: Original strand, 5193807 - 5193980
Alignment:
Q  130 acaagtggtttcttgaattgtttccgaaattcccttttcttgagattttgaaattaaacaattgtaaaatgcctaagaagattgatatttcaagtgttcg 229  Q
    |||| |||||||| ||| ||||||| ||||| ||||| ||||||| ||||||||| ||||| |||| |||| |  ||| ||||||||||||||||| ||     
T  5193807 acaaatggtttctcgaactgtttccaaaatttcctttccttgagagtttgaaattgaacaactgtacaatggccgagaggattgatatttcaagtgatca 5193906  T
Q  230 acttaagagattggagtttatgcattcctctaacttgaaggagcttaatattgattctccaaatctaatatcat 303  Q
    |||||||   |||| |||     |||  ||||||||||||||| | || |||||| ||||||||||| ||||||    
T  5193907 acttaaggtgttggggttatctaattgttctaacttgaaggaggtcaacattgatgctccaaatctattatcat 5193980  T

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Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 130 - 301
Target Start/End: Original strand, 6230501 - 6230672
Alignment:
Q  130 acaagtggtttcttgaattgtttccgaaattcccttttcttgagattttgaaattaaacaattgtaaaatgcctaagaagattgatatttcaagtgttcg 229  Q
    |||| |||||||||||| |||||   ||||| | ||| ||||||| |||||||||  |  |||||| |||| |  ||| |||| |||||||||||||||     
T  6230501 acaaatggtttcttgaactgtttagaaaatttcgtttccttgagagtttgaaattggatgattgtacaatggccgagaggattaatatttcaagtgttca 6230600  T
Q  230 acttaagagattggagtt-tatgcattcctctaacttgaaggagcttaatattgattctccaaatctaatatc 301  Q
    |||||||   |||||||| | || |||  ||||||||||||||| ||||||||||| ||||||||||| ||||    
T  6230601 acttaaggtgttggagttatctg-attgttctaacttgaaggaggttaatattgatgctccaaatctattatc 6230672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 130 - 301
Target Start/End: Original strand, 5204066 - 5204237
Alignment:
Q  130 acaagtggtttcttgaattgtttccgaaattcccttttcttgagattttgaaattaaacaattgtaaaatgcctaagaagattgatatttcaagtgttcg 229  Q
    |||| |||||||||||| ||||| | ||||| ||||| ||||||| |||||| || ||||||||||  |||    ||| |||| |||||||||||||||     
T  5204066 acaaatggtttcttgaactgttttcaaaatttcctttccttgagagtttgaagttgaacaattgtaggatgttcgagaggattaatatttcaagtgttca 5204165  T
Q  230 acttaagagattggagtttatgcattcctctaacttgaaggagcttaatattgattctccaaatctaatatc 301  Q
    |||||||   ||||||||     |||  ||||||||||||||| | || |||||  ||||||||||| ||||    
T  5204166 acttaaggtgttggagttatctaattgttctaacttgaaggaggtcaacattgacgctccaaatctattatc 5204237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 207 - 305
Target Start/End: Complemental strand, 1797258 - 1797160
Alignment:
Q  207 aagattgatatttcaagtgttcgacttaagagattggagtttatgcattcctctaacttgaaggagcttaatattgattctccaaatctaatatcattt 305  Q
    |||||| ||||||||||||||| |||||||   ||||||||    ||||  ||||||||||||||| | || |||||| ||||||||||| ||||||||    
T  1797258 aagattaatatttcaagtgttcaacttaaggtgttggagttatctcattgttctaacttgaaggaggtcaacattgatgctccaaatctattatcattt 1797160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 466
Target Start/End: Original strand, 5194080 - 5194143
Alignment:
Q  403 atctttgcaacttgaggaaattcgtgcaaaacattaaacctaacaatgttttgccatcactatc 466  Q
    ||||||| ||||||||| |||| ||||||||||| |||||| | ||||||||| |||| |||||    
T  5194080 atctttgtaacttgagggaatttgtgcaaaacatcaaacctcaaaatgttttgtcatctctatc 5194143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 466
Target Start/End: Original strand, 6230774 - 6230837
Alignment:
Q  403 atctttgcaacttgaggaaattcgtgcaaaacattaaacctaacaatgttttgccatcactatc 466  Q
    ||||||| ||||||||| |||| ||||||||||| |||||| | ||||||||| |||| |||||    
T  6230774 atctttgtaacttgagggaatttgtgcaaaacatcaaacctcaaaatgttttgtcatctctatc 6230837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 156 - 372
Target Start/End: Original strand, 5170742 - 5170958
Alignment:
Q  156 aaattcccttttcttgagattttgaaattaaacaattgtaaaatgcctaagaagattgatatttcaagtgttcgacttaagagattggagtttatgcatt 255  Q
    ||||||||||| |||||||  ||||||||  | ||||| |||||| |  | | |||| ||||||||||||||| |||||||   ||||||||    ||||    
T  5170742 aaattccctttccttgagaggttgaaattgcaaaattgcaaaatgtccgaaaggattaatatttcaagtgttcaacttaaggtgttggagttatcacatt 5170841  T
Q  256 cctctaacttgaaggagcttaatattgattctccaaatctaatatcatttggatatagcggtttgggtgcttcagaacctaccatatcttttttgaaaaa 355  Q
     || ||||||||||||| |    |||||| |||| |||||| | |||| || |||| | |||  ||||| |||| ||||||  ||||| ||||| | ||     
T  5170842 gctataacttgaaggaggtcggcattgatgctcccaatctattgtcatgtgtatattgtggtaggggtgtttcaaaacctataatatcctttttaagaag 5170941  T
Q  356 ttctagtcaactggaag 372  Q
    |||||||||||| ||||    
T  5170942 ttctagtcaactagaag 5170958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 130 - 236
Target Start/End: Complemental strand, 8552777 - 8552671
Alignment:
Q  130 acaagtggtttcttgaattgtttccgaaattcccttttcttgagattttgaaattaaacaattgtaaaatgcctaagaagattgatatttcaagtgttcg 229  Q
    |||| |||||||||||||||||| ||||||||||||| |||||||  ||||||||   ||| || | |||| || ||| |||| |||||||||||||||     
T  8552777 acaaatggtttcttgaattgttttcgaaattccctttccttgagagattgaaatttgtcaaatgcacaatgtctgagacgattaatatttcaagtgttca 8552678  T
Q  230 acttaag 236  Q
    |||||||    
T  8552677 acttaag 8552671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 127 - 236
Target Start/End: Original strand, 5177410 - 5177519
Alignment:
Q  127 caaacaagtggtttcttgaattgtttccgaaattcccttttcttgagattttgaaattaaacaattgtaaaatgcctaagaagattgatatttcaagtgt 226  Q
    ||||||| |||||||||||| ||||||| ||||| ||||| ||||||| |||| ||||  ||| ||| |  ||| || |||||||| |||||||||||||    
T  5177410 caaacaaatggtttcttgaactgtttccaaaatttcctttccttgagagtttggaattggacagttgcactatgtctgagaagattaatatttcaagtgt 5177509  T
Q  227 tcgacttaag 236  Q
    || |||||||    
T  5177510 tcaacttaag 5177519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 130 - 236
Target Start/End: Original strand, 8305866 - 8305972
Alignment:
Q  130 acaagtggtttcttgaattgtttccgaaattcccttttcttgagattttgaaattaaacaattgtaaaatgcctaagaagattgatatttcaagtgttcg 229  Q
    |||| ||||||||||||||||||  ||||||| |||| |||||||  ||||||||   ||| || | |||| || ||| |||| |||||||||||||||     
T  8305866 acaaatggtttcttgaattgtttttgaaattcgctttccttgagagattgaaatttgtcaaatgcacaatgtctgagacgattaatatttcaagtgttca 8305965  T
Q  230 acttaag 236  Q
    |||||||    
T  8305966 acttaag 8305972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 466
Target Start/End: Original strand, 5177695 - 5177758
Alignment:
Q  403 atctttgcaacttgaggaaattcgtgcaaaacattaaacctaacaatgttttgccatcactatc 466  Q
    ||||||| ||||||||| |||| ||||||||||| |||||| | ||||||||| |||| |||||    
T  5177695 atctttgtaacttgagggaatttgtgcaaaacatcaaacctcaaaatgttttgtcatctctatc 5177758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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