View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2218R-Insertion-1 (Length: 1074)

Name: NF2218R-Insertion-1
Description: NF2218R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2218R-Insertion-1
NF2218R-Insertion-1
[»] chr2 (1 HSPs)
chr2 (9-982)||(42788086-42789065)
[»] chr8 (13 HSPs)
chr8 (666-755)||(5920637-5920726)
chr8 (666-755)||(5983821-5983910)
chr8 (666-755)||(5959303-5959392)
chr8 (643-755)||(5842538-5842650)
chr8 (643-731)||(5849248-5849336)
chr8 (664-755)||(5886857-5886948)
chr8 (653-755)||(5948195-5948297)
chr8 (854-954)||(5921160-5921263)
chr8 (912-954)||(5849851-5849894)
chr8 (912-954)||(5887248-5887291)
chr8 (912-954)||(5949112-5949155)
chr8 (912-954)||(5960377-5960420)
chr8 (912-954)||(5984640-5984683)
[»] chr1 (2 HSPs)
chr1 (663-750)||(51044664-51044751)
chr1 (686-730)||(49848563-49848607)
[»] chr3 (1 HSPs)
chr3 (663-750)||(34626429-34626516)
[»] chr7 (1 HSPs)
chr7 (687-725)||(47813441-47813479)


Alignment Details
Target: chr2 (Bit Score: 787; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 787; E-Value: 0
Query Start/End: Original strand, 9 - 982
Target Start/End: Original strand, 42788086 - 42789065
Alignment:
Q  9 attataacactgatcagcaatttggtttacaacttcatgatgatgatgatcatgttcttgtgaagaagcagaagaagaaaatgggatgctacaaacataa 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42788086 attataacactgatcagcaatttggtttacaacttcatgatgatgatgatcatgttcttgtgaagaagcagaagaagaaaatgggatgctacaaacataa 42788185  T
Q  109 ttatccttaatggtttcactgtcaaaaactttttgcgcaataggttcaagttgattcactaaatgactattattgtcatagnnnnnnnnnnnnnnnnnnn 208  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||                       
T  42788186 ttatccttaatggtttcactgtcaaaaactttttgcacaataggttcaagttgattcactaaatgactattactgtcatag---tgctgctgctgctgct 42788282  T
Q  209 nncatgtatatgtatt------tggaatattgataaagttctgatcaacaatattatagttttgggttgcagcatcacttttggtggtgatttgatgatt 302  Q
      ||||||||||||||      ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  42788283 gccatgtatatgtatttgtatttggaatattgataaaattctgatcaacaatattatagttttgggtggcagcatcacttttggtggtgatttgatgatt 42788382  T
Q  303 ttcttgaatatttggattgagatgatgaattaatgaccatgtatctaattcatatgaagatggaatatttgatgatggtactgtttcaggcaatattgga 402  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  42788383 ttcttgaatatttggattgagatgatgaattaatgaccatgtatctaattcatatgaagatggaatatttgatgatggtagtgtttcaggcaatattgga 42788482  T
Q  403 ttattctgaacatgtaggaaattgggattataactgttgatatcaatatttttgatatcattttgatgatcaataccttgtaggattggagttgggatat 502  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42788483 ttattctgaacatgtaggaaattgggattataactgttgatatcaatatttttgatatcattttgatgatcaataccttgtaggattggagttgggatat 42788582  T
Q  503 tgatgggaaggtaaaggtggttgtcaaagtgatattgatgattggagttaaggataggattgtcattaaataaagggaagaaactttcaacggaactatt 602  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||    
T  42788583 tgatgggaaggtaaaggtggttgtcaaagtgatattgatgattggagttaaggataggattgtcattaaataaagggaagaaactttcaacagaaccatt 42788682  T
Q  603 tctaggacagtgaatatcagaaaatgtggctaaagaagtgggaacaaaatcatgtgaaagtagtttcttctttatgcttgaattccaaaagttcttcacc 702  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42788683 tctaggacagtgaatatcagaaaatgtggctaaagaagtgggaacaaaatcatgtgaaagtagtttcttctttatgcttgaattccaaaagttcttcacc 42788782  T
Q  703 tcattatctgttcttcctggtaaatgctttgctatctgagcccacctgtccaattccaaaccataatttcttgttaagattgatatcaaagaaagagcga 802  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  42788783 tcattatctgttcttcctggtaaatgctttgctatctgagcccacctgtccaattccaaaccataatttcttgttaagattgatatcaaagaaagagcaa 42788882  T
Q  803 taatattgttt-aaaatgaaaataaagatgaattagaggtatatagtatagtatatacctgtttcctagaatggtatgaagttcaataataagagcagct 901  Q
    ||||||||||| |||||||||||||||||||||||||| ||     ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42788883 taatattgtttaaaaatgaaaataaagatgaattagagtta-----tatagtatatacctgtttcctagaatggtatgaagttcaataataagagcagct 42788977  T
Q  902 tcttgt-gag-aaaacttccacgtttcaaatcaggtcttaaataa-ttatccatctca--ctgcaactttt--cacatctctgcagtc 982  Q
    |||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||  |||||||||||  |||||||||||||||    
T  42788978 tcttgtggagaaaaacttccacgtttcaaatcaggtcttaaataatttatccatctcaacctgcaactttttccacatctctgcagtc 42789065  T

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Target: chr8 (Bit Score: 62; Significance: 3e-26; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 666 - 755
Target Start/End: Original strand, 5920637 - 5920726
Alignment:
Q  666 tttcttctttatgcttgaattccaaaagttcttcacctcattatctgttcttcctggtaaatgctttgctatctgagcccacctgtccaa 755  Q
    ||||||||| ||| |||||||||||||||| ||||||||||||||||||||||| ||||| ||||| || ||||||||||||||||||||    
T  5920637 tttcttcttcatggttgaattccaaaagtttttcacctcattatctgttcttccaggtaagtgcttcgcaatctgagcccacctgtccaa 5920726  T

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Target: chr8; HSP #2
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 666 - 755
Target Start/End: Original strand, 5983821 - 5983910
Alignment:
Q  666 tttcttctttatgcttgaattccaaaagttcttcacctcattatctgttcttcctggtaaatgctttgctatctgagcccacctgtccaa 755  Q
    ||||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||| || ||||| ||||||||||| ||||||||    
T  5983821 tttcttctttatggttgaattccaaaagtttttcacctcattatctgttcttccaggtaagtgttttgcaatctgagcccatctgtccaa 5983910  T

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Target: chr8; HSP #3
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 666 - 755
Target Start/End: Original strand, 5959303 - 5959392
Alignment:
Q  666 tttcttctttatgcttgaattccaaaagttcttcacctcattatctgttcttcctggtaaatgctttgctatctgagcccacctgtccaa 755  Q
    ||||||||||||| | |||||||||||||| ||||||||||||||||||||||| | ||| || ||||| ||||||||||| ||||||||    
T  5959303 tttcttctttatggtagaattccaaaagtttttcacctcattatctgttcttccagttaagtgttttgcaatctgagcccatctgtccaa 5959392  T

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Target: chr8; HSP #4
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 643 - 755
Target Start/End: Original strand, 5842538 - 5842650
Alignment:
Q  643 ggaacaaaatcatgtgaaagtagtttcttctttatgcttgaattccaaaagttcttcacctcattatctgttcttcctggtaaatgctttgctatctgag 742  Q
    ||||||| |||||  ||||| ||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||| || | ||| || || || |    
T  5842538 ggaacaatatcatcagaaaggagttttttctttatgcttgaattccaaaagtttttcacctcattatcggttcttcctggcaagtacttggcaatttgtg 5842637  T
Q  743 cccacctgtccaa 755  Q
    |||| ||||||||    
T  5842638 cccatctgtccaa 5842650  T

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Target: chr8; HSP #5
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 643 - 731
Target Start/End: Original strand, 5849248 - 5849336
Alignment:
Q  643 ggaacaaaatcatgtgaaagtagtttcttctttatgcttgaattccaaaagttcttcacctcattatctgttcttcctggtaaatgctt 731  Q
    ||||||| |||||  ||||| ||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||| || |||||    
T  5849248 ggaacaatatcatcagaaaggagttttttctttatgcttgaattccaaaagtttttcacctcattatccgttcttcctggcaagtgctt 5849336  T

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Target: chr8; HSP #6
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 664 - 755
Target Start/End: Original strand, 5886857 - 5886948
Alignment:
Q  664 agtttcttctttatgcttgaattccaaaagttcttcacctcattatctgttcttcctggtaaatgctttgctatctgagcccacctgtccaa 755  Q
    ||||| ||||| |||||||||||||||||||| |||||||||||||| |||||||||||||| ||||| || || || ||||| ||||||||    
T  5886857 agttttttcttcatgcttgaattccaaaagtttttcacctcattatccgttcttcctggtaagtgcttagcaatttgtgcccatctgtccaa 5886948  T

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Target: chr8; HSP #7
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 653 - 755
Target Start/End: Original strand, 5948195 - 5948297
Alignment:
Q  653 catgtgaaagtagtttcttctttatgcttgaattccaaaagttcttcacctcattatctgttcttcctggtaaatgctttgctatctgagcccacctgtc 752  Q
    |||| ||||| | ||| ||||||||| |||||||||||||||| || | |||||||||||||||||| ||||| |||||||| || |||||||| |||||    
T  5948195 catgagaaaggatttttttctttatggttgaattccaaaagttttttatctcattatctgttcttccaggtaagtgctttgcaatttgagcccatctgtc 5948294  T
Q  753 caa 755  Q
    |||    
T  5948295 caa 5948297  T

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Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 854 - 954
Target Start/End: Original strand, 5921160 - 5921263
Alignment:
Q  854 atatacctgtttcctagaatggtatgaagttcaataataagagcagcttcttg-tgaga-aaacttccacgtttcaaatcaggtcttaaataa-ttatcc 950  Q
    |||||||| || ||||||||| | || ||||| | ||| || ||||||||||| ||||| |||||||||||||||||||||||||||| |||| ||||||    
T  5921160 atatacctattgcctagaatgctgtggagttctagaatgagtgcagcttcttgatgagagaaacttccacgtttcaaatcaggtcttagataatttatcc 5921259  T
Q  951 atct 954  Q
    ||||    
T  5921260 atct 5921263  T

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Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 912 - 954
Target Start/End: Original strand, 5849851 - 5849894
Alignment:
Q  912 aaacttccacgtttcaaatcaggtcttaaataa-ttatccatct 954  Q
    |||||||||||||||||||||||||||| |||| ||||||||||    
T  5849851 aaacttccacgtttcaaatcaggtcttagataatttatccatct 5849894  T

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Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 912 - 954
Target Start/End: Original strand, 5887248 - 5887291
Alignment:
Q  912 aaacttccacgtttcaaatcaggtcttaaataa-ttatccatct 954  Q
    |||||||||||||||||||||||||||| |||| ||||||||||    
T  5887248 aaacttccacgtttcaaatcaggtcttagataatttatccatct 5887291  T

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Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 912 - 954
Target Start/End: Original strand, 5949112 - 5949155
Alignment:
Q  912 aaacttccacgtttcaaatcaggtcttaaataa-ttatccatct 954  Q
    |||||||||||||||||||||||||||| |||| ||||||||||    
T  5949112 aaacttccacgtttcaaatcaggtcttagataatttatccatct 5949155  T

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Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 912 - 954
Target Start/End: Original strand, 5960377 - 5960420
Alignment:
Q  912 aaacttccacgtttcaaatcaggtcttaaataa-ttatccatct 954  Q
    |||||||||||||||||||||||||||| |||| ||||||||||    
T  5960377 aaacttccacgtttcaaatcaggtcttagataatttatccatct 5960420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 912 - 954
Target Start/End: Original strand, 5984640 - 5984683
Alignment:
Q  912 aaacttccacgtttcaaatcaggtcttaaataa-ttatccatct 954  Q
    |||||||||||||||||||||||||||| |||| ||||||||||    
T  5984640 aaacttccacgtttcaaatcaggtcttagataatttatccatct 5984683  T

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Target: chr1 (Bit Score: 36; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 663 - 750
Target Start/End: Complemental strand, 51044751 - 51044664
Alignment:
Q  663 tagtttcttctttatgcttgaattccaaaagttcttcacctcattatctgttcttcctggtaaatgctttgctatctgagcccacctg 750  Q
    |||||||||||| |  ||||||||||||||||| || | ||||||||||||||| |||||||| ||   ||| || ||||||||||||    
T  51044751 tagtttcttcttcaaacttgaattccaaaagttttttatctcattatctgttctccctggtaattgtgatgcaatttgagcccacctg 51044664  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 686 - 730
Target Start/End: Original strand, 49848563 - 49848607
Alignment:
Q  686 tccaaaagttcttcacctcattatctgttcttcctggtaaatgct 730  Q
    ||||| ||||||| | |||||||||||||||||||||||||||||    
T  49848563 tccaatagttctttatctcattatctgttcttcctggtaaatgct 49848607  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 663 - 750
Target Start/End: Original strand, 34626429 - 34626516
Alignment:
Q  663 tagtttcttctttatgcttgaattccaaaagttcttcacctcattatctgttcttcctggtaaatgctttgctatctgagcccacctg 750  Q
    |||||||||||| |  ||||||||||||||||| || | ||||||||| ||||| |||||||| ||   ||| || ||||||||||||    
T  34626429 tagtttcttcttcaaacttgaattccaaaagtttttaatctcattatccgttctacctggtaattgtgctgcaatttgagcccacctg 34626516  T

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Target: chr7 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 687 - 725
Target Start/End: Complemental strand, 47813479 - 47813441
Alignment:
Q  687 ccaaaagttcttcacctcattatctgttcttcctggtaa 725  Q
    ||||||||||||||| ||||||||||||| |||||||||    
T  47813479 ccaaaagttcttcacttcattatctgttcgtcctggtaa 47813441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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