View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2218R-Insertion-10 (Length: 315)

Name: NF2218R-Insertion-10
Description: NF2218R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2218R-Insertion-10
NF2218R-Insertion-10
[»] chr3 (3 HSPs)
chr3 (8-142)||(43555111-43555243)
chr3 (278-315)||(26481966-26482003)
chr3 (281-315)||(8075127-8075161)
[»] chr1 (4 HSPs)
chr1 (274-315)||(19088244-19088285)
chr1 (261-315)||(8177182-8177237)
chr1 (282-315)||(24019066-24019099)
chr1 (278-315)||(51814533-51814570)
[»] chr8 (3 HSPs)
chr8 (279-315)||(31408122-31408158)
chr8 (281-315)||(22193364-22193398)
chr8 (278-315)||(19703487-19703524)
[»] scaffold0291 (1 HSPs)
scaffold0291 (261-315)||(2470-2525)
[»] chr7 (2 HSPs)
chr7 (280-315)||(38374599-38374634)
chr7 (261-315)||(19553475-19553529)
[»] chr5 (3 HSPs)
chr5 (261-315)||(43442217-43442272)
chr5 (281-315)||(34984848-34984882)
chr5 (281-315)||(37258366-37258400)
[»] chr4 (7 HSPs)
chr4 (261-315)||(49576894-49576949)
chr4 (281-315)||(37274459-37274493)
chr4 (273-310)||(14451751-14451788)
chr4 (282-315)||(34661708-34661741)
chr4 (278-314)||(11592154-11592190)
chr4 (283-315)||(44865378-44865410)
chr4 (274-310)||(51969052-51969088)
[»] chr2 (2 HSPs)
chr2 (261-315)||(16918578-16918633)
chr2 (278-315)||(37480114-37480151)
[»] scaffold0300 (1 HSPs)
scaffold0300 (273-315)||(4374-4416)
[»] chr6 (1 HSPs)
chr6 (261-305)||(34293826-34293871)


Alignment Details
Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 8 - 142
Target Start/End: Complemental strand, 43555243 - 43555111
Alignment:
Q  8 aggtgactacacccattagcatcaaaagggacaaaagaaccaaaaccctaaaccacggtaggtgaacatcttgatgcttgtgttggtaataatatcttct 107  Q
    |||||||||||| |||||||||||||||||||||| ||||||||||||||||| | ||||||||||| ||||||||| |||| ||||||||||||| ||     
T  43555243 aggtgactacacgcattagcatcaaaagggacaaaggaaccaaaaccctaaacaagggtaggtgaacgtcttgatgcctgtgctggtaataatatc-tcc 43555145  T
Q  108 tcggtgctagatttttctagctagctttattaatt 142  Q
    || || ||||| |||||||||||||||| ||||||    
T  43555144 tcagtactaga-ttttctagctagctttgttaatt 43555111  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 278 - 315
Target Start/End: Original strand, 26481966 - 26482003
Alignment:
Q  278 tgagagtgtgctcctcctcaaggttttaggttcgattc 315  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  26481966 tgagagtgtgctcctcctcaaagttttaggttcgattc 26482003  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 281 - 315
Target Start/End: Complemental strand, 8075161 - 8075127
Alignment:
Q  281 gagtgtgctcctcctcaaggttttaggttcgattc 315  Q
    ||||||||||||||||||||||| |||||||||||    
T  8075161 gagtgtgctcctcctcaaggtttcaggttcgattc 8075127  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 274 - 315
Target Start/End: Original strand, 19088244 - 19088285
Alignment:
Q  274 gatttgagagtgtgctcctcctcaaggttttaggttcgattc 315  Q
    ||||||||| ||| ||||||||||||||||||||||||||||    
T  19088244 gatttgagattgtactcctcctcaaggttttaggttcgattc 19088285  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 261 - 315
Target Start/End: Complemental strand, 8177237 - 8177182
Alignment:
Q  261 tggtattggtttgg-atttgagagtgtgctcctcctcaaggttttaggttcgattc 315  Q
    ||||||||| |||| || || ||||||||||||||||||||||| |||||||||||    
T  8177237 tggtattggcttgggatctgggagtgtgctcctcctcaaggtttcaggttcgattc 8177182  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 315
Target Start/End: Original strand, 24019066 - 24019099
Alignment:
Q  282 agtgtgctcctcctcaaggttttaggttcgattc 315  Q
    |||||||||||||||||||| |||||||||||||    
T  24019066 agtgtgctcctcctcaaggtcttaggttcgattc 24019099  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 315
Target Start/End: Original strand, 51814533 - 51814570
Alignment:
Q  278 tgagagtgtgctcctcctcaaggttttaggttcgattc 315  Q
    |||||||||||||||||||||||| | |||||||||||    
T  51814533 tgagagtgtgctcctcctcaaggtctcaggttcgattc 51814570  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 315
Target Start/End: Complemental strand, 31408158 - 31408122
Alignment:
Q  279 gagagtgtgctcctcctcaaggttttaggttcgattc 315  Q
    ||||||||||||||||||||||||| |||||||||||    
T  31408158 gagagtgtgctcctcctcaaggtttcaggttcgattc 31408122  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 281 - 315
Target Start/End: Complemental strand, 22193398 - 22193364
Alignment:
Q  281 gagtgtgctcctcctcaaggttttaggttcgattc 315  Q
    ||||||||||||||||||||| |||||||||||||    
T  22193398 gagtgtgctcctcctcaaggtcttaggttcgattc 22193364  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 315
Target Start/End: Complemental strand, 19703524 - 19703487
Alignment:
Q  278 tgagagtgtgctcctcctcaaggttttaggttcgattc 315  Q
    |||||||||||||||||||||||| | |||||||||||    
T  19703524 tgagagtgtgctcctcctcaaggtctcaggttcgattc 19703487  T

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Target: scaffold0291 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 261 - 315
Target Start/End: Complemental strand, 2525 - 2470
Alignment:
Q  261 tggtattggttt-ggatttgagagtgtgctcctcctcaaggttttaggttcgattc 315  Q
    |||||||||||| |||| || ||||||||||||||||||||| | |||||||||||    
T  2525 tggtattggttttggatctgggagtgtgctcctcctcaaggtctcaggttcgattc 2470  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 280 - 315
Target Start/End: Complemental strand, 38374634 - 38374599
Alignment:
Q  280 agagtgtgctcctcctcaaggttttaggttcgattc 315  Q
    |||||||||||||||||||||| |||||||||||||    
T  38374634 agagtgtgctcctcctcaaggtcttaggttcgattc 38374599  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 315
Target Start/End: Original strand, 19553475 - 19553529
Alignment:
Q  261 tggtattggtttggatttgagagtgtgctcctcctcaaggttttaggttcgattc 315  Q
    ||||||||| |||||  || ||||||||||||||||||||| |||||||| ||||    
T  19553475 tggtattggcttggacctgggagtgtgctcctcctcaaggtcttaggttcaattc 19553529  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 261 - 315
Target Start/End: Original strand, 43442217 - 43442272
Alignment:
Q  261 tggtattggtttg-gatttgagagtgtgctcctcctcaaggttttaggttcgattc 315  Q
    ||||||||||||| ||| || ||||||||||||||||||||| | |||||||||||    
T  43442217 tggtattggtttgagatctgggagtgtgctcctcctcaaggtctcaggttcgattc 43442272  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 281 - 315
Target Start/End: Original strand, 34984848 - 34984882
Alignment:
Q  281 gagtgtgctcctcctcaaggttttaggttcgattc 315  Q
    ||||||||||||||||||||| |||||||||||||    
T  34984848 gagtgtgctcctcctcaaggtcttaggttcgattc 34984882  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 281 - 315
Target Start/End: Complemental strand, 37258400 - 37258366
Alignment:
Q  281 gagtgtgctcctcctcaaggttttaggttcgattc 315  Q
    ||||||||||||||||||||||| |||||||||||    
T  37258400 gagtgtgctcctcctcaaggtttcaggttcgattc 37258366  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 261 - 315
Target Start/End: Complemental strand, 49576949 - 49576894
Alignment:
Q  261 tggtattgg-tttggatttgagagtgtgctcctcctcaaggttttaggttcgattc 315  Q
    ||||||||| |||||| ||| ||||||||||||||||||||| | |||||||||||    
T  49576949 tggtattggctttggacttgggagtgtgctcctcctcaaggtctcaggttcgattc 49576894  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 281 - 315
Target Start/End: Complemental strand, 37274493 - 37274459
Alignment:
Q  281 gagtgtgctcctcctcaaggttttaggttcgattc 315  Q
    ||||||||||||||||||||| |||||||||||||    
T  37274493 gagtgtgctcctcctcaaggtcttaggttcgattc 37274459  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 310
Target Start/End: Complemental strand, 14451788 - 14451751
Alignment:
Q  273 ggatttgagagtgtgctcctcctcaaggttttaggttc 310  Q
    |||| |||||||||||||||||||||||| ||||||||    
T  14451788 ggatatgagagtgtgctcctcctcaaggtcttaggttc 14451751  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 315
Target Start/End: Original strand, 34661708 - 34661741
Alignment:
Q  282 agtgtgctcctcctcaaggttttaggttcgattc 315  Q
    |||||||||||| |||||||||||||||||||||    
T  34661708 agtgtgctcctcttcaaggttttaggttcgattc 34661741  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 278 - 314
Target Start/End: Complemental strand, 11592190 - 11592154
Alignment:
Q  278 tgagagtgtgctcctcctcaaggttttaggttcgatt 314  Q
    ||||||||||||||||||| |||| ||||||||||||    
T  11592190 tgagagtgtgctcctcctccaggtcttaggttcgatt 11592154  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 283 - 315
Target Start/End: Original strand, 44865378 - 44865410
Alignment:
Q  283 gtgtgctcctcctcaaggttttaggttcgattc 315  Q
    ||||||||||||||||||| |||||||||||||    
T  44865378 gtgtgctcctcctcaaggtcttaggttcgattc 44865410  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 274 - 310
Target Start/End: Original strand, 51969052 - 51969088
Alignment:
Q  274 gatttgagagtgtgctcctcctcaaggttttaggttc 310  Q
    |||||| ||||||||||||||||||||||| ||||||    
T  51969052 gatttgggagtgtgctcctcctcaaggtttcaggttc 51969088  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 261 - 315
Target Start/End: Complemental strand, 16918633 - 16918578
Alignment:
Q  261 tggtattggtttgg-atttgagagtgtgctcctcctcaaggttttaggttcgattc 315  Q
    |||||||||||||| || || ||||||||||||||||||||| ||||||| |||||    
T  16918633 tggtattggtttgggatctgggagtgtgctcctcctcaaggtcttaggttggattc 16918578  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 315
Target Start/End: Original strand, 37480114 - 37480151
Alignment:
Q  278 tgagagtgtgctcctcctcaaggttttaggttcgattc 315  Q
    |||||||||||||||||||||||| | |||||||||||    
T  37480114 tgagagtgtgctcctcctcaaggtctcaggttcgattc 37480151  T

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Target: scaffold0300 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 315
Target Start/End: Original strand, 4374 - 4416
Alignment:
Q  273 ggatttgagagtgtgctcctcctcaaggttttaggttcgattc 315  Q
    ||||||| |||||||||||| || |||||||||||||||||||    
T  4374 ggatttgggagtgtgctccttcttaaggttttaggttcgattc 4416  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 305
Target Start/End: Complemental strand, 34293871 - 34293826
Alignment:
Q  261 tggtattggtttgga-tttgagagtgtgctcctcctcaaggtttta 305  Q
    ||||||||||||||| |||| |||||||||||||||||| ||||||    
T  34293871 tggtattggtttggaatttgggagtgtgctcctcctcaaagtttta 34293826  T

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