View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2218R-Insertion-2 (Length: 803)
Name: NF2218R-Insertion-2
Description: NF2218R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2218R-Insertion-2 |
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Alignment Details
Target: chr3 (Bit Score: 464; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 326 - 801
Target Start/End: Original strand, 49517622 - 49518097
Alignment:
| Q |
326 |
ccttctgctttaatagcttgctcagttggaatagaaagaatacttggcttctgatgcgagtgaaagtgatgataacagtgagactgatgatcagcttgat |
425 |
Q |
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| T |
49517622 |
ccttctgctttaatagcttgctcagttggaatagaaagaatacttggcttctgatgcgagtgaaagtgatgataacagtgagactgatgatcagcttgat |
49517721 |
T |
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| Q |
426 |
gagaaggctagaaaacaagatatgtatcttagtttggtctattcaggcaatggttcagatgaagatgctgaacatgacgctagccaagagatggaggtga |
525 |
Q |
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| T |
49517722 |
gagaaggctagaaaacaagatatgtatcttagtttggtctattcaggcaatggttcaaatgaagatgctgaacatgacgctagccaagagatggaggtga |
49517821 |
T |
|
| Q |
526 |
ccttccattcaggattggaatgtctaaataaaaaattaacggaaaagaaggacaaaagatcggaaacagtttgggaagaatttcggaggaaaaggcgtga |
625 |
Q |
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| T |
49517822 |
ccttccattcaggattggaatgtctaaataaaaaattaacggaaaagaaggacaaaagatcggaaacagtttgggaagaatttcggaggaaaaggcgtga |
49517921 |
T |
|
| Q |
626 |
gaaaaagaaggccaagaaaaataaattgaagtattcatcagatgatgatagtgatcaacaagctaatgaagaagcagatgagttcctcattgaggaacct |
725 |
Q |
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| T |
49517922 |
gaaaaagaaggccaagaaaaataaattgaagtattcatcagatgatgatagtgatcaacaagctaatgaagaagcagatgagttcctcattgaggaacct |
49518021 |
T |
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| Q |
726 |
tgtgttaagaagaggaagaaagcgcaaatgagtaaaaaagacaaagatcataataacctccaacacatggatatgg |
801 |
Q |
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| T |
49518022 |
tgtgttaagaagaggaagaaagcacaaatgagtaaaaatgacaaagatcataataacctccaacacatggatatgg |
49518097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 190; E-Value: 1e-102
Query Start/End: Original strand, 9 - 258
Target Start/End: Original strand, 49517306 - 49517554
Alignment:
| Q |
9 |
ttatcattcaatgcaatttctttttgcattggaaatataatcaatccttcagtaatctatgtctgcaaatatccatgtcatgcacatacatataagctga |
108 |
Q |
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| T |
49517306 |
ttatcattcaatgcaatttttttttgcgttggaaatataatcaatccttcagtgatctatgtctgtaaatatccatgtcatgcacatacatataagctga |
49517405 |
T |
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| Q |
109 |
ctagttgcaaactctctttataacatgcttaagtgtgcgaataacttgcagtattgatgtatcttgtacatgtgtctattttgttgattgttacannnnn |
208 |
Q |
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| T |
49517406 |
ctagttgcaaactctctttataacatgcttaagtgtgcgaataacttgcagtattgatgtatcttgtacatgtgtctattttgttgattgttaca-tttt |
49517504 |
T |
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| Q |
209 |
nnnnnnnngagaaattgttacatataaatcgggaagcattcatatactca |
258 |
Q |
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| T |
49517505 |
ttttttttgagaaattgttacatataaatcgggaagcattcatatactca |
49517554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 245; Significance: 1e-135; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 336 - 745
Target Start/End: Original strand, 27747016 - 27747416
Alignment:
| Q |
336 |
taatagcttgctcagttggaatagaaagaatacttggcttctgatgcgagtgaaagtgatgataacagtgagactgatgatcagcttgatgagaaggcta |
435 |
Q |
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||||||||||||||||| |||| |||||| ||||||||||| ||||||||||||||||||||||||| ||| |||||||||| |||||||| ||||||| |
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| T |
27747016 |
taatagcttgctcagttagaatggaaagattacttggcttcggatgcgagtgaaagtgatgataacaccgaggctgatgatcaacttgatgaaaaggcta |
27747115 |
T |
|
| Q |
436 |
gaaaacaagatatgtatcttagtttggtctattcaggcaatggttcagatgaagatgctgaacatgacgctagccaagagatggaggtgaccttccattc |
535 |
Q |
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|||||||| ||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |
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| T |
27747116 |
gaaaacaatctatatatcttaatttggtctattcgggcaatggttcagatgaagatgctgaacatgacattggccaagagatggaggtgaccttccattc |
27747215 |
T |
|
| Q |
536 |
aggattggaatgtctaaataaaaaattaacggaaaagaaggacaaaagatcggaaacagtttgggaagaatttcggaggaaaaggcgtgagaaaaagaag |
635 |
Q |
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| T |
27747216 |
aggattggaaagtctaaataaaaaattaatggaaaagaaggataa------ggaaacagtttgggaagcatctcgaaggaaaaggcatgagaaaaagaag |
27747309 |
T |
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| Q |
636 |
gccaagaaaaataaattgaagtattcatcagatgatgatagtgatcaacaagctaatgaagaagcagatgagttcctcattgaggaaccttgtgttaaga |
735 |
Q |
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| T |
27747310 |
gccaagaagaacaaatcgaagtattcatcagatgatgatagtgatcaacaagttattgaagcagcaaatgagt---tcattgaggaacctagtgttaaga |
27747406 |
T |
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| Q |
736 |
agaggaagaa |
745 |
Q |
| |
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| T |
27747407 |
agaggaagaa |
27747416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 566 - 665
Target Start/End: Complemental strand, 38527704 - 38527605
Alignment:
| Q |
566 |
ggaaaagaaggacaaaagatcggaaacagtttgggaagaatttcggaggaaaaggcgtgagaaaaagaaggccaagaaaaataaattgaagtattcatca |
665 |
Q |
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| T |
38527704 |
ggaaaagaaggataaaaaatcaagaacagtttgggaagaatgtctgaggaaaaaacgtgagaaaaagaaagccaggaaaaacaaatcaaagcattcatca |
38527605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 201
Target Start/End: Original strand, 27746843 - 27746895
Alignment:
| Q |
149 |
ataacttgcagtattgatgtatcttgtacatgtgtctattttgttgattgtta |
201 |
Q |
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| T |
27746843 |
ataacttgcagtatcgatgtatcctgtgcatgtgtctattttgttaattgtta |
27746895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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